Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

406340 .. 409200

Gene Structure 2861 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G02200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGACGACGATTGTTCCCACCTCCGAAGAAAATCCCTTTCTCGCTGTTGTCCGATTCACTTCCCAGCTCGCCTGGGCCGATGCTGGTCCCGAGGCAGCAGAGCCAGAAATTACCAGGCTCTGTAGGGAGGCTGAGGAGTCAATGGTAGCAGAGAAGTGGCTTGAATTGTCTTCGTTAATGGTCACTTCAGCTGAATTGGTATCTTCTAAGATATCTGAGAAAGATCTTGAGTGTACCTACACCATCATTTGCAGCATTGTCAAGAATGCGAAAAGCCCTGAGCAAGTCCTTGAAATGGTGAAAGCTATAGCTTCCAAGGTTGCTCAACAACCCAGTGACAAAGCTTCACTTCGTTTGAAGATCCTCTTCAATCTCTATAACCTGGTTGACCACCCGTATGCTCGATTTCAAGTATACATGAAAGCTCTTACACTAGCTGTTGATGGGAAGGTTACTGAGTACATAGTTTCTTCTTTTAAGAAGATCGATAACTTTCTGAAAGAGTGGAATATTGACATTAAAGATCAGAGGGAACTCTTTCTTGCCATTGCTAATGTGCTGAAAGAAAACAAAAGCTTGGTGAATGAATCCCTTAAGTTCTTGACGAAGTACCTAGCAACTTTCTCCAATGAGGATGCTCAGGTCCTGGATGAAGCCAAGGAGGAGGCTGTGCGTGCAGTTATCGAATTTGTCAAAGCTTCCAGTATTTTCCAGTGTGATTTATTGGACTTGCCAGCCGTAGCACAATTGGAAAAGGATGCTAAATATGCACCTGTTTACCAACTTCTGAAGATTTTTCTTACTCAGAGGTTAAATGCCTACACGGAATTCCAAAATGCAAATTCGGGATTTCTGCAAAGCTATGGACTTTCCAATGAAGATTGTGTTACGAAGATGAGGTTGTTGTCACTAGTGGATTTGGCCTCAGATGAATCTGGCAAAATACCTTACACCTCGATTAAAGACACTCTTCAGGTAAATGAACAGGATGTCGAGTTATGGATCGTGAAGGCAATAACTGCAAAACTGATTGAGTGTAAGATGGATCAGATGAACCAAGTTTTAATTGTCAGGCAACCGCTCTTCCGAACGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

364

Amino Acids

41.16

Weight (kDa)

4.99

Isoelectric Point (pI)

35.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	282 - 358	1.1e-13	PCI domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1081
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	1 cut(s)	1079
AclWI	GGATC	3 cut(s)	355, 1010, 1053
AcsI	RAATTY	3 cut(s)	686, 827, 841
AcuI	CTGAAG	3 cut(s)	171, 809, 956
AfaI	GTAC	3 cut(s)	235, 461, 611
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	5 cut(s)	164, 293, 358, 370, 410
AhlI	ACTAGT	1 cut(s)	910
AjnI	CCWGG	4 cut(s)	71, 113, 381, 645
AlwI	GGATC	3 cut(s)	355, 1010, 1053
AlwNI	CAGNNNCTG	2 cut(s)	120, 646
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	2 cut(s)	75, 921
ApeKI	GCWGC	2 cut(s)	95, 252
ApoI	RAATTY	3 cut(s)	686, 827, 841
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	3 cut(s)	75, 86, 643
AsuHPI	GGTGA	2 cut(s)	310, 592
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	2 cut(s)	86, 643
BbsI	GAAGAC	1 cut(s)	162
BbvCI	CCTCAGC	1 cut(s)	132
BbvI	GCAGC	2 cut(s)	107, 264
BccI	CCATC	3 cut(s)	251, 437, 1036
BceAI	ACGGC	1 cut(s)	722
BciT130I	CCWGG	4 cut(s)	73, 115, 383, 647
BcuI	ACTAGT	1 cut(s)	910
BfaI	CTAG	3 cut(s)	434, 614, 911
BfmI	CTRYAG	2 cut(s)	121, 306
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	2 cut(s)	96, 253
BlsI	GCNGC	2 cut(s)	97, 254
Bme1390I	CCNGG	4 cut(s)	73, 115, 383, 647
Bme18I	GGWCC	2 cut(s)	86, 643
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	3 cut(s)	75, 86, 643
BmiI	GGNNCC	1 cut(s)	88
BmrFI	CCNGG	4 cut(s)	73, 115, 383, 647
BmrI	ACTGGG	1 cut(s)	327
BmsI	GCATC	3 cut(s)	70, 625, 748
BmuI	ACTGGG	1 cut(s)	327
BpiI	GAAGAC	1 cut(s)	162
Bpu10I	CCTNAGC	3 cut(s)	132, 279, 639
BpuEI	CTTGAG	1 cut(s)	248
Bsa29I	ATCGAT	1 cut(s)	486
BsaJI	CCNNGG	4 cut(s)	72, 90, 315, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	3 cut(s)	333, 702, 712
Bse3DI	GCAATG	1 cut(s)	546
BseBI	CCWGG	4 cut(s)	73, 115, 383, 647
BseCI	ATCGAT	1 cut(s)	486
BseDI	CCNNGG	4 cut(s)	72, 90, 315, 657
BseGI	GGATG	4 cut(s)	640, 655, 763, 994
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	1 cut(s)	546
BseMII	CTCAG	7 cut(s)	123, 207, 270, 447, 653, 818, 939
BseNI	ACTGG	3 cut(s)	333, 702, 712
BseRI	GAGGAG	2 cut(s)	149, 677
BseXI	GCAGC	2 cut(s)	107, 264
BseYI	CCCAGC	1 cut(s)	63
BsgI	GTGCAG	1 cut(s)	696
BshFI	GGCC	2 cut(s)	77, 923
BshVI	ATCGAT	1 cut(s)	486
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	1 cut(s)	72
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	72
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	2 cut(s)	77, 923
BsoBI	CYCGRG	1 cut(s)	89
Bsp143I	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
BspACI	CCGC	1 cut(s)	1079
BspANI	GGCC	2 cut(s)	77, 923
BspCNI	CTCAG	7 cut(s)	124, 208, 271, 448, 652, 817, 938
BspDI	ATCGAT	1 cut(s)	486
BspLI	GGNNCC	1 cut(s)	88
BspPI	GGATC	3 cut(s)	355, 1010, 1053
BspQI	GCTCTTC	1 cut(s)	1088
BspTI	CTTAAG	1 cut(s)	593
BsrBI	CCGCTC	1 cut(s)	1081
BsrDI	GCAATG	1 cut(s)	546
BsrI	ACTGG	3 cut(s)	333, 702, 712
BssECI	CCNNGG	4 cut(s)	72, 90, 315, 657
BssMI	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
BssNAI	GTATAC	1 cut(s)	415
BssT1I	CCWWGG	2 cut(s)	315, 657
Bst1107I	GTATAC	1 cut(s)	415
Bst2UI	CCWGG	4 cut(s)	73, 115, 383, 647
Bst6I	CTCTTC	3 cut(s)	371, 975, 1088
BstAFI	CTTAAG	1 cut(s)	593
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstC8I	GCNNGC	3 cut(s)	69, 675, 735
BstDEI	CTNAG	8 cut(s)	132, 207, 216, 279, 456, 639, 804, 925
BstF5I	GGATG	4 cut(s)	640, 655, 763, 994
BstKTI	GATC	6 cut(s)	226, 363, 486, 526, 1005, 1048
BstMBI	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
BstMWI	GCNNNNNNNGC	3 cut(s)	674, 767, 1019
BstNI	CCWGG	4 cut(s)	73, 115, 383, 647
BstSCI	CCNGG	4 cut(s)	71, 113, 381, 645
BstSFI	CTRYAG	2 cut(s)	121, 306
BstV1I	GCAGC	2 cut(s)	107, 264
BstV2I	GAAGAC	1 cut(s)	162
BstX2I	RGATCY	2 cut(s)	223, 360
BstYI	RGATCY	2 cut(s)	223, 360
BstZ17I	GTATAC	1 cut(s)	415
Bsu15I	ATCGAT	1 cut(s)	486
BsuRI	GGCC	2 cut(s)	77, 923
BsuTUI	ATCGAT	1 cut(s)	486
BtsCI	GGATG	4 cut(s)	640, 655, 763, 994
BtsIMutI	CAGTG	2 cut(s)	340, 719
Cac8I	GCNNGC	3 cut(s)	69, 675, 735
CaiI	CAGNNNCTG	2 cut(s)	120, 646
Cfr13I	GGNCC	3 cut(s)	75, 86, 643
ClaI	ATCGAT	1 cut(s)	486
CsiI	ACCWGGT	1 cut(s)	381
Csp6I	GTAC	3 cut(s)	234, 460, 610
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	3 cut(s)	234, 460, 610
DdeI	CTNAG	8 cut(s)	132, 207, 216, 279, 456, 639, 804, 925
DpnI	GATC	6 cut(s)	225, 362, 485, 525, 1004, 1047
DpnII	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
Eam1104I	CTCTTC	3 cut(s)	371, 975, 1088
EarI	CTCTTC	3 cut(s)	371, 975, 1088
Eco130I	CCWWGG	2 cut(s)	315, 657
Eco32I	GATATC	1 cut(s)	213
Eco47I	GGWCC	2 cut(s)	86, 643
Eco57I	CTGAAG	3 cut(s)	171, 809, 956
Eco88I	CYCGRG	1 cut(s)	89
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	827
EcoRII	CCWGG	4 cut(s)	71, 113, 381, 645
EcoRV	GATATC	1 cut(s)	213
EcoT14I	CCWWGG	2 cut(s)	315, 657
ErhI	CCWWGG	2 cut(s)	315, 657
FaeI	CATG	1 cut(s)	421
FaiI	YATR	9 cut(s)	308, 378, 399, 415, 419, 464, 768, 864, 1000
FalI	AAGNNNNNCTT	6 cut(s)	333, 365, 350, 382, 954, 986
FaqI	GGGAC	1 cut(s)	72
FatI	CATG	1 cut(s)	417
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	96, 253
FokI	GGATG	4 cut(s)	647, 662, 770, 1001
Fsp4HI	GCNGC	2 cut(s)	96, 253
FspBI	CTAG	3 cut(s)	434, 614, 911
GluI	GCNGC	2 cut(s)	96, 253
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	2 cut(s)	77, 923
Hin1II	CATG	1 cut(s)	421
HincII	GTYRAC	1 cut(s)	388
HindII	GTYRAC	1 cut(s)	388
HindIII	AAGCTT	3 cut(s)	342, 574, 696
HinfI	GANTC	4 cut(s)	54, 137, 587, 932
HphI	GGTGA	2 cut(s)	310, 592
Hpy166II	GTNNAC	4 cut(s)	234, 388, 415, 778
Hpy188III	TCNNGA	6 cut(s)	89, 227, 262, 601, 846, 1006
Hpy8I	GTNNAC	4 cut(s)	234, 388, 415, 778
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	442, 1003
HpyCH4IV	ACGT	1 cut(s)	1091
HpyCH4V	TGCA	6 cut(s)	252, 677, 770, 839, 856, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	674, 767, 1019
HpyF3I	CTNAG	8 cut(s)	132, 207, 216, 279, 456, 639, 804, 925
HpySE526I	ACGT	1 cut(s)	1091
Hsp92II	CATG	1 cut(s)	421
Kzo9I	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
LguI	GCTCTTC	1 cut(s)	1088
Lsp1109I	GCAGC	2 cut(s)	107, 264
LweI	GCATC	3 cut(s)	70, 625, 748
MabI	ACCWGGT	1 cut(s)	381
MaeI	CTAG	3 cut(s)	434, 614, 911
MaeII	ACGT	1 cut(s)	1091
MaeIII	GTNAC	5 cut(s)	181, 335, 451, 886, 906
MalI	GATC	6 cut(s)	225, 362, 485, 525, 1004, 1047
MbiI	CCGCTC	1 cut(s)	1081
MboI	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	2 cut(s)	223, 360
MluCI	AATT	8 cut(s)	108, 164, 194, 686, 746, 827, 841, 1065
MlyI	GAGTC	1 cut(s)	146
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	7 cut(s)	176, 477, 519, 594, 812, 960, 1064
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	1 cut(s)	191
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	4 cut(s)	73, 115, 383, 647
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	4 cut(s)	73, 115, 383, 647
MwoI	GCNNNNNNNGC	3 cut(s)	674, 767, 1019
NdeII	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
NlaIII	CATG	1 cut(s)	421
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	3 cut(s)	181, 335, 906
PciSI	GCTCTTC	1 cut(s)	1088
PcsI	WCGNNNNNNNCGW	1 cut(s)	75
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	54, 587, 932
PfoI	TCCNGGA	1 cut(s)	645
PkrI	GCNGC	2 cut(s)	97, 254
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
PpuMI	RGGWCCY	1 cut(s)	643
Psp5II	RGGWCCY	1 cut(s)	643
Psp6I	CCWGG	4 cut(s)	71, 113, 381, 645
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	4 cut(s)	71, 113, 381, 645
PspN4I	GGNNCC	1 cut(s)	88
PspPI	GGNCC	3 cut(s)	75, 86, 643
PspPPI	RGGWCCY	1 cut(s)	643
PstNI	CAGNNNCTG	2 cut(s)	120, 646
PsuI	RGATCY	2 cut(s)	223, 360
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	235, 461, 611
RsaNI	GTAC	3 cut(s)	234, 460, 610
RseI	CAYNNNNRTG	1 cut(s)	396
SapI	GCTCTTC	1 cut(s)	1088
SaqAI	TTAA	7 cut(s)	176, 477, 519, 594, 812, 960, 1064
SatI	GCNGC	2 cut(s)	96, 253
Sau3AI	GATC	6 cut(s)	223, 360, 483, 523, 1002, 1045
Sau96I	GGNCC	3 cut(s)	75, 86, 643
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	4 cut(s)	73, 115, 383, 647
SexAI	ACCWGGT	1 cut(s)	381
SfaNI	GCATC	3 cut(s)	70, 625, 748
SfcI	CTRYAG	2 cut(s)	121, 306
SinI	GGWCC	2 cut(s)	86, 643
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	2 cut(s)	227, 593
SmoI	CTYRAG	2 cut(s)	227, 593
SpeI	ACTAGT	1 cut(s)	910
Sse9I	AATT	8 cut(s)	108, 164, 194, 686, 746, 827, 841, 1065
SsiI	CCGC	1 cut(s)	1079
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	3 cut(s)	434, 614, 911
StyD4I	CCNGG	4 cut(s)	71, 113, 381, 645
StyI	CCWWGG	2 cut(s)	315, 657
TaiI	ACGT	1 cut(s)	1094
TaqI	TCGA	5 cut(s)	403, 486, 684, 956, 993
TasI	AATT	8 cut(s)	108, 164, 194, 686, 746, 827, 841, 1065
TatI	WGTACW	1 cut(s)	459
TfiI	GAWTC	3 cut(s)	54, 587, 932
Tru1I	TTAA	7 cut(s)	176, 477, 519, 594, 812, 960, 1064
Tru9I	TTAA	7 cut(s)	176, 477, 519, 594, 812, 960, 1064
TscAI	CASTG	2 cut(s)	340, 719
TseFI	GTSAC	3 cut(s)	181, 335, 906
TseI	GCWGC	2 cut(s)	95, 252
Tsp45I	GTSAC	3 cut(s)	181, 335, 906
TspDTI	ATGAA	7 cut(s)	434, 600, 666, 891, 945, 996, 1067
TspGWI	ACGGA	1 cut(s)	839
TspRI	CASTG	2 cut(s)	340, 719
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	2 cut(s)	86, 643
XapI	RAATTY	3 cut(s)	686, 827, 841
XmiI	GTMKAC	1 cut(s)	414
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	3 cut(s)	434, 614, 911

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.