Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

3643498 .. 3644731

Gene Structure 1234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G003840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGATGATGATGGTCCCGACCTCCGAGGAAGATCGGGCATTCGCCGTCGTCCGAACGCCTCCGAGCAAGCCTGGCCCTACAATGTGTGGAAGATCCAGATGGTTCGATTTGGTGCCACTTGTGCTAACTTCAGCTGATGTGATACTGTCAAAGGTCTCAGACAAAGATTTTGAGTGCATCTTCACTGTTATCTGCAATGTTGTTACAAATTCTGAGAGTCTACATGAAGTACGTCAGATGTTTTTTTTCAATCTGTACAACCTACTGGAGGATCCATATAGTCAGTTCTCTGTTTACTTGAGCGCTCTAAATTTGGCCATCAATGGAAAGGTCACTGGTTTCTGGAAAGACTGGAATATTGGGGTCTCGGACCAGAGGCTATTTCCTATCATATCTAATGTTTTAAAAGAACATAAAATACTGGCAACATTTTCTGGCGAAGACGCACATGTTTTGAGGCAAGCGAAGGATGAGGCTGTTCGCACAATTTGTGATTTGTTAGATATGCCTGCTGTAGCACAGTTGGAGAAGGATGCTAAAAATGCATCGGCATATCAGCTTTTGAAGGTATTTTTGACCCAGAGGCTGGTTGTGTGCTTGGACTATGGTCTGGTCCATGAAGATTGTATTACTAAGATGAGGTTGATTTCATTGGTGGATCTTGGCTCTGATGAATCTGGACGAGTTCCTTATAGTCTCATCAGAGATACACTGCAGATTAATGATGATGAATTACTGGACTGTAAGATGGACCAGATGAATGAAGTTGTAATTGAGCAATGGCATACCCTTAAAACAAACACTGTTCAAGCTAACAGGCCAGCTGAAGATGGTTCCCAGGCAGCTCAAGACTTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

287

Amino Acids

32.46

Weight (kDa)

4.89

Isoelectric Point (pI)

36.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	112
AccB7I	CCANNNNNTGG	1 cut(s)	586
AccI	GTMKAC	1 cut(s)	220
AclWI	GGATC	4 cut(s)	87, 266, 279, 666
AcoI	YGGCCR	1 cut(s)	315
AcsI	RAATTY	2 cut(s)	208, 310
AcuI	CTGAAG	2 cut(s)	114, 846
AfaI	GTAC	2 cut(s)	231, 257
AfeI	AGCGCT	1 cut(s)	304
AfiI	CCNNNNNNNGG	2 cut(s)	268, 586
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	3 cut(s)	250, 565, 809
AjnI	CCWGG	2 cut(s)	70, 837
AluBI	AGCT	5 cut(s)	134, 559, 812, 824, 845
AluI	AGCT	5 cut(s)	134, 559, 812, 824, 845
Alw26I	GTCTC	3 cut(s)	160, 370, 701
AlwI	GGATC	4 cut(s)	87, 266, 279, 666
AlwNI	CAGNNNCTG	1 cut(s)	586
Aor51HI	AGCGCT	1 cut(s)	304
AoxI	GGCC	3 cut(s)	73, 315, 818
ApeKI	GCWGC	1 cut(s)	842
ApoI	RAATTY	2 cut(s)	208, 310
ArsI	GACNNNNNNTTYG	2 cut(s)	152, 184
AseI	ATTAAT	1 cut(s)	720
AspLEI	GCGC	1 cut(s)	305
AspS9I	GGNCC	5 cut(s)	13, 74, 370, 613, 751
AvaII	GGWCC	4 cut(s)	13, 370, 613, 751
BalI	TGGCCA	1 cut(s)	317
BamHI	GGATCC	1 cut(s)	271
BanI	GGYRCC	1 cut(s)	112
BbsI	GAAGAC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	854
BccI	CCATC	5 cut(s)	4, 93, 326, 742, 824
BceAI	ACGGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	72, 839
BcoDI	GTCTC	3 cut(s)	160, 370, 701
BfmI	CTRYAG	2 cut(s)	513, 713
BfoI	RGCGCY	1 cut(s)	306
BisI	GCNGC	1 cut(s)	843
BlsI	GCNGC	1 cut(s)	844
Bme1390I	CCNGG	2 cut(s)	72, 839
Bme18I	GGWCC	4 cut(s)	13, 370, 613, 751
BmgT120I	GGNCC	5 cut(s)	13, 74, 370, 613, 751
BmiI	GGNNCC	4 cut(s)	15, 114, 273, 835
BmrFI	CCNGG	2 cut(s)	72, 839
BmsI	GCATC	3 cut(s)	186, 523, 554
BoxI	GACNNNNGTC	1 cut(s)	606
BpiI	GAAGAC	1 cut(s)	447
BpmI	CTGGAG	1 cut(s)	287
BpuEI	CTTGAG	2 cut(s)	319, 831
BsaI	GGTCTC	2 cut(s)	160, 370
BsaJI	CCNNGG	2 cut(s)	24, 837
Bsc4I	CCNNNNNNNGG	2 cut(s)	268, 586
Bse1I	ACTGG	5 cut(s)	270, 340, 356, 426, 741
Bse3DI	GCAATG	2 cut(s)	202, 785
BseBI	CCWGG	2 cut(s)	72, 839
BseDI	CCNNGG	2 cut(s)	24, 837
BseGI	GGATG	2 cut(s)	475, 538
BseLI	CCNNNNNNNGG	2 cut(s)	268, 586
BseMI	GCAATG	2 cut(s)	202, 785
BseMII	CTCAG	2 cut(s)	171, 204
BseNI	ACTGG	5 cut(s)	270, 340, 356, 426, 741
BseXI	GCAGC	1 cut(s)	854
BshFI	GGCC	3 cut(s)	75, 317, 820
BshNI	GGYRCC	1 cut(s)	112
BslI	CCNNNNNNNGG	2 cut(s)	268, 586
BsmAI	GTCTC	3 cut(s)	160, 370, 701
BsmI	GAATGC	1 cut(s)	38
BsnI	GGCC	3 cut(s)	75, 317, 820
Bso31I	GGTCTC	2 cut(s)	160, 370
Bsp1407I	TGTACA	1 cut(s)	255
Bsp143I	GATC	4 cut(s)	31, 92, 271, 658
BspANI	GGCC	3 cut(s)	75, 317, 820
BspCNI	CTCAG	2 cut(s)	170, 205
BspLI	GGNNCC	4 cut(s)	15, 114, 273, 835
BspMAI	CTGCAG	1 cut(s)	717
BspPI	GGATC	4 cut(s)	87, 266, 279, 666
BspT107I	GGYRCC	1 cut(s)	112
BspTNI	GGTCTC	2 cut(s)	160, 370
BsrDI	GCAATG	2 cut(s)	202, 785
BsrGI	TGTACA	1 cut(s)	255
BsrI	ACTGG	5 cut(s)	270, 340, 356, 426, 741
BssECI	CCNNGG	2 cut(s)	24, 837
BssMI	GATC	4 cut(s)	31, 92, 271, 658
Bst2UI	CCWGG	2 cut(s)	72, 839
Bst4CI	ACNGT	5 cut(s)	147, 187, 522, 743, 805
BstAUI	TGTACA	1 cut(s)	255
BstC8I	GCNNGC	4 cut(s)	68, 462, 510, 822
BstDEI	CTNAG	3 cut(s)	157, 213, 633
BstENI	CCTNNNNNAGG	1 cut(s)	266
BstF5I	GGATG	2 cut(s)	475, 538
BstH2I	RGCGCY	1 cut(s)	306
BstHHI	GCGC	1 cut(s)	305
BstKTI	GATC	4 cut(s)	34, 95, 274, 661
BstMAI	GTCTC	3 cut(s)	160, 370, 701
BstMBI	GATC	4 cut(s)	31, 92, 271, 658
BstMWI	GCNNNNNNNGC	3 cut(s)	72, 121, 542
BstNI	CCWGG	2 cut(s)	72, 839
BstNSI	RCATGY	1 cut(s)	452
BstPAI	GACNNNNGTC	1 cut(s)	606
BstSCI	CCNGG	2 cut(s)	70, 837
BstSFI	CTRYAG	2 cut(s)	513, 713
BstV1I	GCAGC	1 cut(s)	854
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	3 cut(s)	92, 271, 658
BstYI	RGATCY	3 cut(s)	92, 271, 658
BsuRI	GGCC	3 cut(s)	75, 317, 820
BtsCI	GGATG	2 cut(s)	475, 538
BtsI	GCAGTG	1 cut(s)	710
BtsIMutI	CAGTG	4 cut(s)	183, 333, 710, 801
Cac8I	GCNNGC	4 cut(s)	68, 462, 510, 822
CaiI	CAGNNNCTG	1 cut(s)	586
CfoI	GCGC	1 cut(s)	305
Cfr13I	GGNCC	5 cut(s)	13, 74, 370, 613, 751
CseI	GACGC	1 cut(s)	452
Csp6I	GTAC	2 cut(s)	230, 256
CviAII	CATG	3 cut(s)	224, 449, 617
CviQI	GTAC	2 cut(s)	230, 256
DdeI	CTNAG	3 cut(s)	157, 213, 633
DpnI	GATC	4 cut(s)	33, 94, 273, 660
DpnII	GATC	4 cut(s)	31, 92, 271, 658
DraI	TTTAAA	1 cut(s)	405
EaeI	YGGCCR	1 cut(s)	315
Eco31I	GGTCTC	2 cut(s)	160, 370
Eco47I	GGWCC	4 cut(s)	13, 370, 613, 751
Eco47III	AGCGCT	1 cut(s)	304
Eco57I	CTGAAG	2 cut(s)	114, 846
EcoNI	CCTNNNNNAGG	1 cut(s)	266
EcoRII	CCWGG	2 cut(s)	70, 837
EcoT22I	ATGCAT	1 cut(s)	547
FaeI	CATG	3 cut(s)	227, 452, 620
FatI	CATG	3 cut(s)	223, 448, 616
FblI	GTMKAC	1 cut(s)	220
Fnu4HI	GCNGC	1 cut(s)	843
FokI	GGATG	2 cut(s)	482, 545
Fsp4HI	GCNGC	1 cut(s)	843
GlaI	GCGC	1 cut(s)	304
GluI	GCNGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	287
HaeII	RGCGCY	1 cut(s)	306
HaeIII	GGCC	3 cut(s)	75, 317, 820
HgaI	GACGC	1 cut(s)	452
HhaI	GCGC	1 cut(s)	305
Hin1II	CATG	3 cut(s)	227, 452, 620
Hin6I	GCGC	1 cut(s)	303
HinP1I	GCGC	1 cut(s)	303
HinfI	GANTC	2 cut(s)	217, 674
Hpy166II	GTNNAC	2 cut(s)	221, 295
Hpy188I	TCNGA	9 cut(s)	25, 53, 63, 160, 214, 237, 370, 670, 704
Hpy188III	TCNNGA	5 cut(s)	16, 96, 343, 678, 848
Hpy8I	GTNNAC	2 cut(s)	221, 295
Hpy99I	CGWCG	1 cut(s)	50
HpyAV	CCTTC	3 cut(s)	460, 523, 559
HpyCH4III	ACNGT	5 cut(s)	147, 187, 522, 743, 805
HpyCH4IV	ACGT	1 cut(s)	232
HpyCH4V	TGCA	4 cut(s)	177, 195, 545, 715
HpyF10VI	GCNNNNNNNGC	3 cut(s)	72, 121, 542
HpyF3I	CTNAG	3 cut(s)	157, 213, 633
HpySE526I	ACGT	1 cut(s)	232
Hsp92II	CATG	3 cut(s)	227, 452, 620
HspAI	GCGC	1 cut(s)	303
Kzo9I	GATC	4 cut(s)	31, 92, 271, 658
Lsp1109I	GCAGC	1 cut(s)	854
LweI	GCATC	3 cut(s)	186, 523, 554
MaeII	ACGT	1 cut(s)	232
MaeIII	GTNAC	2 cut(s)	202, 331
MalI	GATC	4 cut(s)	33, 94, 273, 660
MboI	GATC	4 cut(s)	31, 92, 271, 658
MboII	GAAGA	6 cut(s)	41, 102, 172, 452, 632, 839
MflI	RGATCY	3 cut(s)	92, 271, 658
MlsI	TGGCCA	1 cut(s)	317
MluCI	AATT	5 cut(s)	208, 310, 486, 731, 771
MluNI	TGGCCA	1 cut(s)	317
MlyI	GAGTC	1 cut(s)	226
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	9 cut(s)	19, 31, 69, 262, 369, 450, 466, 576, 633
Mox20I	TGGCCA	1 cut(s)	317
Mph1103I	ATGCAT	1 cut(s)	547
MscI	TGGCCA	1 cut(s)	317
MseI	TTAA	3 cut(s)	404, 720, 792
Msp20I	TGGCCA	1 cut(s)	317
MspA1I	CMGCKG	2 cut(s)	134, 824
MspR9I	CCNGG	2 cut(s)	72, 839
Mva1269I	GAATGC	1 cut(s)	38
MvaI	CCWGG	2 cut(s)	72, 839
MwoI	GCNNNNNNNGC	3 cut(s)	72, 121, 542
NdeII	GATC	4 cut(s)	31, 92, 271, 658
NlaIII	CATG	3 cut(s)	227, 452, 620
NlaIV	GGNNCC	4 cut(s)	15, 114, 273, 835
NmuCI	GTSAC	1 cut(s)	331
NsiI	ATGCAT	1 cut(s)	547
NspI	RCATGY	1 cut(s)	452
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	38
PfeI	GAWTC	1 cut(s)	674
PflMI	CCANNNNNTGG	1 cut(s)	586
PkrI	GCNGC	1 cut(s)	844
PleI	GAGTC	1 cut(s)	225
PpsI	GAGTC	1 cut(s)	225
PscI	ACATGT	1 cut(s)	448
PshAI	GACNNNNGTC	1 cut(s)	606
PshBI	ATTAAT	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	70, 837
PspGI	CCWGG	2 cut(s)	70, 837
PspN4I	GGNNCC	4 cut(s)	15, 114, 273, 835
PspPI	GGNCC	5 cut(s)	13, 74, 370, 613, 751
PsrI	GAACNNNNNNTAC	2 cut(s)	402, 434
PstI	CTGCAG	1 cut(s)	717
PstNI	CAGNNNCTG	1 cut(s)	586
PsuI	RGATCY	3 cut(s)	92, 271, 658
PvuII	CAGCTG	2 cut(s)	134, 824
RsaI	GTAC	2 cut(s)	231, 257
RsaNI	GTAC	2 cut(s)	230, 256
SaqAI	TTAA	3 cut(s)	404, 720, 792
SatI	GCNGC	1 cut(s)	843
Sau3AI	GATC	4 cut(s)	31, 92, 271, 658
Sau96I	GGNCC	5 cut(s)	13, 74, 370, 613, 751
SchI	GAGTC	1 cut(s)	226
ScrFI	CCNGG	2 cut(s)	72, 839
SfaNI	GCATC	3 cut(s)	186, 523, 554
SfcI	CTRYAG	2 cut(s)	513, 713
SinI	GGWCC	4 cut(s)	13, 370, 613, 751
SmlI	CTYRAG	2 cut(s)	298, 846
SmoI	CTYRAG	2 cut(s)	298, 846
Sse9I	AATT	5 cut(s)	208, 310, 486, 731, 771
SspI	AATATT	1 cut(s)	358
StyD4I	CCNGG	2 cut(s)	70, 837
TaaI	ACNGT	5 cut(s)	147, 187, 522, 743, 805
TaiI	ACGT	1 cut(s)	235
TaqI	TCGA	1 cut(s)	105
TasI	AATT	5 cut(s)	208, 310, 486, 731, 771
TatI	WGTACW	1 cut(s)	255
TfiI	GAWTC	1 cut(s)	674
Tru1I	TTAA	3 cut(s)	404, 720, 792
Tru9I	TTAA	3 cut(s)	404, 720, 792
TscAI	CASTG	4 cut(s)	190, 340, 717, 808
TseFI	GTSAC	1 cut(s)	331
TseI	GCWGC	1 cut(s)	842
Tsp45I	GTSAC	1 cut(s)	331
TspDTI	ATGAA	7 cut(s)	240, 633, 639, 687, 744, 773, 777
TspRI	CASTG	4 cut(s)	190, 340, 717, 808
Van91I	CCANNNNNTGG	1 cut(s)	586
VpaK11BI	GGWCC	4 cut(s)	13, 370, 613, 751
VspI	ATTAAT	1 cut(s)	720
XagI	CCTNNNNNAGG	1 cut(s)	266
XapI	RAATTY	2 cut(s)	208, 310
XceI	RCATGY	1 cut(s)	452
XmiI	GTMKAC	1 cut(s)	220
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.