Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

4510797 .. 4517231

Gene Structure 6435 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06340.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAATTTTTTTTTCCTTCTAGATCTTGAGTGCATGTTCACTGTTATCTGCAATGTTGTTACAAAGTCTGAAAGTCCAGATGAAGCACTGGAGATGGCAAAACTTAGATCCTCAAAGATTACTCAAAAACCAACCGACAAGCCTGCATTGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCTCTTAATTTGGCTATCCATGGGAAGGTCACTGAACATGTCATTCCTTCATTCAAAAATGTGGAAAGTTTTTTGAAAGGGTGGAATATTGAGATCACTGATCAGAGGCAGTTATTTCTGACCATCGTTAATGTTCTGAAGGAACACAAAAACTTGGCAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACAGTTTCTGGTGAAGATGTGCATACGTTGAGTGAAGCCAAAGAGGAAGCTATACGTACAATTGTGGAATTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATTTGCCTGCTGTACAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCATATCAGCTTTTAAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGCAAATTCTGATTTACTGAAAGCTACGGTCTTGTCCATGAAGACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

229

Amino Acids

26.09

Weight (kDa)

6.97

Isoelectric Point (pI)

30.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	213
AclWI	GGATC	1 cut(s)	102
AcsI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
AcuI	CTGAAG	1 cut(s)	380
AfaI	GTAC	4 cut(s)	176, 410, 475, 540
AfiI	CCNNNNNNNGG	1 cut(s)	247
AflIII	ACRYGT	2 cut(s)	259, 504
AgsI	TTSAA	4 cut(s)	169, 277, 298, 394
AluBI	AGCT	3 cut(s)	467, 583, 659
AluI	AGCT	3 cut(s)	467, 583, 659
Alw21I	GWGCWC	1 cut(s)	226
AlwI	GGATC	1 cut(s)	102
AlwNI	CAGNNNCTG	3 cut(s)	425, 547, 610
AoxI	GGCC	1 cut(s)	495
ApeKI	GCWGC	1 cut(s)	635
ApoI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
AspLEI	GCGC	1 cut(s)	153
AspS9I	GGNCC	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	440
BbsI	GAAGAC	1 cut(s)	683
Bbv12I	GWGCWC	1 cut(s)	226
BbvI	GCAGC	1 cut(s)	622
BccI	CCATC	2 cut(s)	88, 353
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BclI	TGATCA	1 cut(s)	322
BfaI	CTAG	1 cut(s)	20
BglII	AGATCT	2 cut(s)	22, 591
BisI	GCNGC	1 cut(s)	636
BlpI	GCTNAGC	1 cut(s)	561
BlsI	GCNGC	1 cut(s)	637
BmcAI	AGTACT	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	496
BmiI	GGNNCC	1 cut(s)	498
BmsI	GCATC	2 cut(s)	547, 604
BpiI	GAAGAC	1 cut(s)	683
BpmI	CTGGAG	3 cut(s)	110, 206, 569
Bpu1102I	GCTNAGC	1 cut(s)	561
BpuEI	CTTGAG	2 cut(s)	47, 238
BsaAI	YACGTR	1 cut(s)	473
BsaJI	CCNNGG	1 cut(s)	241
Bsc4I	CCNNNNNNNGG	1 cut(s)	247
Bse118I	RCCGGY	1 cut(s)	201
Bse1I	ACTGG	3 cut(s)	93, 189, 552
Bse3DI	GCAATG	2 cut(s)	58, 146
BseDI	CCNNGG	1 cut(s)	241
BseGI	GGATG	2 cut(s)	562, 619
BseLI	CCNNNNNNNGG	1 cut(s)	247
BseMI	GCAATG	2 cut(s)	58, 146
BseMII	CTCAG	1 cut(s)	617
BseNI	ACTGG	3 cut(s)	93, 189, 552
BseXI	GCAGC	1 cut(s)	622
BshFI	GGCC	1 cut(s)	497
BsiHKAI	GWGCWC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	202
BslI	CCNNNNNNNGG	1 cut(s)	247
BsnI	GGCC	1 cut(s)	497
Bsp1286I	GDGCHC	1 cut(s)	226
Bsp1407I	TGTACA	2 cut(s)	174, 538
Bsp143I	GATC	5 cut(s)	22, 107, 315, 322, 591
Bsp1720I	GCTNAGC	1 cut(s)	561
Bsp19I	CCATGG	1 cut(s)	241
BspANI	GGCC	1 cut(s)	497
BspCNI	CTCAG	1 cut(s)	616
BspLI	GGNNCC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	102
BsrDI	GCAATG	2 cut(s)	58, 146
BsrFI	RCCGGY	1 cut(s)	201
BsrGI	TGTACA	2 cut(s)	174, 538
BsrI	ACTGG	3 cut(s)	93, 189, 552
BssAI	RCCGGY	1 cut(s)	201
BssECI	CCNNGG	1 cut(s)	241
BssMI	GATC	5 cut(s)	22, 107, 315, 322, 591
BssT1I	CCWWGG	1 cut(s)	241
Bst4CI	ACNGT	3 cut(s)	43, 421, 664
BstAUI	TGTACA	2 cut(s)	174, 538
BstBAI	YACGTR	1 cut(s)	473
BstC8I	GCNNGC	3 cut(s)	144, 534, 567
BstDEI	CTNAG	4 cut(s)	104, 208, 561, 603
BstDSI	CCRYGG	1 cut(s)	241
BstF5I	GGATG	2 cut(s)	562, 619
BstHHI	GCGC	1 cut(s)	153
BstKTI	GATC	5 cut(s)	25, 110, 318, 325, 594
BstMBI	GATC	5 cut(s)	22, 107, 315, 322, 591
BstMWI	GCNNNNNNNGC	3 cut(s)	148, 529, 566
BstNSI	RCATGY	4 cut(s)	37, 263, 508, 569
BstSNI	TACGTA	1 cut(s)	473
BstV1I	GCAGC	1 cut(s)	622
BstV2I	GAAGAC	1 cut(s)	683
BstX2I	RGATCY	3 cut(s)	22, 107, 591
BstXI	CCANNNNNNTGG	1 cut(s)	412
BstYI	RGATCY	3 cut(s)	22, 107, 591
BsuRI	GGCC	1 cut(s)	497
BtgI	CCRYGG	1 cut(s)	241
BtsCI	GGATG	2 cut(s)	562, 619
BtsIMutI	CAGTG	5 cut(s)	39, 86, 252, 318, 518
Cac8I	GCNNGC	3 cut(s)	144, 534, 567
CaiI	CAGNNNCTG	3 cut(s)	425, 547, 610
CfoI	GCGC	1 cut(s)	153
Cfr10I	RCCGGY	1 cut(s)	201
Cfr13I	GGNCC	1 cut(s)	496
Csp6I	GTAC	4 cut(s)	175, 409, 474, 539
CviAII	CATG	6 cut(s)	34, 242, 260, 505, 566, 673
CviQI	GTAC	4 cut(s)	175, 409, 474, 539
DdeI	CTNAG	4 cut(s)	104, 208, 561, 603
DpnI	GATC	5 cut(s)	24, 109, 317, 324, 593
DpnII	GATC	5 cut(s)	22, 107, 315, 322, 591
DraI	TTTAAA	1 cut(s)	588
Eco105I	TACGTA	1 cut(s)	473
Eco130I	CCWWGG	1 cut(s)	241
Eco57I	CTGAAG	1 cut(s)	380
EcoO109I	RGGNCCY	1 cut(s)	496
EcoT14I	CCWWGG	1 cut(s)	241
EcoT22I	ATGCAT	1 cut(s)	571
ErhI	CCWWGG	1 cut(s)	241
FaeI	CATG	6 cut(s)	37, 245, 263, 508, 569, 676
FatI	CATG	6 cut(s)	33, 241, 259, 504, 565, 672
FbaI	TGATCA	1 cut(s)	322
FblI	GTMKAC	1 cut(s)	213
Fnu4HI	GCNGC	1 cut(s)	636
FokI	GGATG	2 cut(s)	569, 626
Fsp4HI	GCNGC	1 cut(s)	636
FspBI	CTAG	1 cut(s)	20
GlaI	GCGC	1 cut(s)	152
GluI	GCNGC	1 cut(s)	636
GsuI	CTGGAG	3 cut(s)	110, 206, 569
HaeIII	GGCC	1 cut(s)	497
HapII	CCGG	1 cut(s)	202
HhaI	GCGC	1 cut(s)	153
Hin1II	CATG	6 cut(s)	37, 245, 263, 508, 569, 676
Hin6I	GCGC	1 cut(s)	151
HinP1I	GCGC	1 cut(s)	151
HinfI	GANTC	2 cut(s)	386, 601
HpaII	CCGG	1 cut(s)	202
HphI	GGTGA	1 cut(s)	440
Hpy166II	GTNNAC	2 cut(s)	39, 214
Hpy188I	TCNGA	7 cut(s)	70, 327, 342, 360, 600, 606, 646
Hpy188III	TCNNGA	4 cut(s)	20, 26, 77, 400
Hpy8I	GTNNAC	2 cut(s)	39, 214
HpyAV	CCTTC	6 cut(s)	26, 241, 279, 355, 487, 547
HpyCH4III	ACNGT	3 cut(s)	43, 421, 664
HpyCH4IV	ACGT	2 cut(s)	443, 472
HpyCH4V	TGCA	7 cut(s)	33, 51, 146, 439, 569, 638, 683
HpyF10VI	GCNNNNNNNGC	3 cut(s)	148, 529, 566
HpyF3I	CTNAG	4 cut(s)	104, 208, 561, 603
HpySE526I	ACGT	2 cut(s)	443, 472
Hsp92II	CATG	6 cut(s)	37, 245, 263, 508, 569, 676
HspAI	GCGC	1 cut(s)	151
Ksp22I	TGATCA	1 cut(s)	322
Kzo9I	GATC	5 cut(s)	22, 107, 315, 322, 591
Lsp1109I	GCAGC	1 cut(s)	622
LweI	GCATC	2 cut(s)	547, 604
MaeI	CTAG	1 cut(s)	20
MaeII	ACGT	2 cut(s)	443, 472
MaeIII	GTNAC	2 cut(s)	58, 250
MalI	GATC	5 cut(s)	24, 109, 317, 324, 593
MboI	GATC	5 cut(s)	22, 107, 315, 322, 591
MboII	GAAGA	1 cut(s)	443
MfeI	CAATTG	1 cut(s)	477
MflI	RGATCY	3 cut(s)	22, 107, 591
MhlI	GDGCHC	1 cut(s)	226
MluCI	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
MlyI	GAGTC	2 cut(s)	395, 595
MnlI	CCTC	4 cut(s)	121, 321, 454, 600
Mph1103I	ATGCAT	1 cut(s)	571
MseI	TTAA	4 cut(s)	155, 228, 351, 587
MspI	CCGG	1 cut(s)	202
MunI	CAATTG	1 cut(s)	477
MwoI	GCNNNNNNNGC	3 cut(s)	148, 529, 566
NcoI	CCATGG	1 cut(s)	241
NdeII	GATC	5 cut(s)	22, 107, 315, 322, 591
NlaIII	CATG	6 cut(s)	37, 245, 263, 508, 569, 676
NlaIV	GGNNCC	1 cut(s)	498
NmuCI	GTSAC	1 cut(s)	250
NsiI	ATGCAT	1 cut(s)	571
NspI	RCATGY	4 cut(s)	37, 263, 508, 569
PaeI	GCATGC	1 cut(s)	569
PciI	ACATGT	2 cut(s)	259, 504
PkrI	GCNGC	1 cut(s)	637
PleI	GAGTC	2 cut(s)	394, 595
PpsI	GAGTC	2 cut(s)	394, 595
Ppu21I	YACGTR	1 cut(s)	473
PscI	ACATGT	2 cut(s)	259, 504
PspN4I	GGNNCC	1 cut(s)	498
PspPI	GGNCC	1 cut(s)	496
PstNI	CAGNNNCTG	3 cut(s)	425, 547, 610
PsuI	RGATCY	3 cut(s)	22, 107, 591
RsaI	GTAC	4 cut(s)	176, 410, 475, 540
RsaNI	GTAC	4 cut(s)	175, 409, 474, 539
SaqAI	TTAA	4 cut(s)	155, 228, 351, 587
SatI	GCNGC	1 cut(s)	636
Sau3AI	GATC	5 cut(s)	22, 107, 315, 322, 591
Sau96I	GGNCC	1 cut(s)	496
ScaI	AGTACT	1 cut(s)	410
SchI	GAGTC	2 cut(s)	395, 595
SduI	GDGCHC	1 cut(s)	226
SetI	ASST	7 cut(s)	183, 252, 446, 469, 475, 585, 661
SfaNI	GCATC	2 cut(s)	547, 604
SmlI	CTYRAG	2 cut(s)	26, 217
SmoI	CTYRAG	2 cut(s)	26, 217
SnaBI	TACGTA	1 cut(s)	473
SphI	GCATGC	1 cut(s)	569
Sse9I	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	1 cut(s)	20
StyI	CCWWGG	1 cut(s)	241
TaaI	ACNGT	3 cut(s)	43, 421, 664
TaiI	ACGT	2 cut(s)	446, 475
TasI	AATT	7 cut(s)	4, 229, 395, 477, 485, 526, 640
TatI	WGTACW	3 cut(s)	174, 408, 538
Tru1I	TTAA	4 cut(s)	155, 228, 351, 587
Tru9I	TTAA	4 cut(s)	155, 228, 351, 587
TscAI	CASTG	5 cut(s)	46, 93, 259, 325, 518
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	1 cut(s)	635
Tsp45I	GTSAC	1 cut(s)	250
TspDTI	ATGAA	3 cut(s)	17, 96, 261
TspRI	CASTG	5 cut(s)	46, 93, 259, 325, 518
XapI	RAATTY	5 cut(s)	4, 395, 485, 526, 640
XbaI	TCTAGA	1 cut(s)	19
XceI	RCATGY	4 cut(s)	37, 263, 508, 569
XmiI	GTMKAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	20
ZrmI	AGTACT	1 cut(s)	410
Zsp2I	ATGCAT	1 cut(s)	571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.