MD09G1068800.v1.1

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Forward (+)
4697641 .. 4701257
3617 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1068800.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGACGACTGTGGTGCAAACCTCCGAGGAAGATCCCGCTCTGGCCGTCGTCCGATTCACCTCGGAGCTCGCCTGGGCCGACGCCGGCCACGAGGTTGCTGAGCCACAAGTTACTAGACTATGTGCTGAAGCCCAAGAATGCGTGGAAATGGGCAGGTCGTTCGATTTGGTGTCACTTATGCTTACATCGGCTGAGGTCATATTGTCAAAGGTCTCGGAAAAAGATCTTGAGTGCATATTCACTGTTATCTGCAACGTGGTTACAAAGTCGGAAAGTCCAGATGAAGCACTTGAGATGGCAAAGCTTATATCCTCAAAGATTACTCAAAAACCAAGTGACAAGCCTGCACTGCGCGTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCGCTTAATTTGGCAATCAATGGGAAGGTCGCTGAACATGTCATCCCTTCATTCAAAAAGGTGGAAAGTTTTTTGAAAGAGTGGAATATTGGGATCTCTGATCAGAGGCAGTTATTTCTTGCCATTGCTAATGTTCTGAAAGAACATAAAAACTTGGCAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACTTTTTCTGGTGAAGATGCACATACATTGAGTGAAGCCAAAGAGGAAGCTGTACGCACAATTGTTGAGTTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATATGCCTGCTGTAGAGCAACTGGAGAAGGATACTAAGCATGCATTGGCCTATCAGCTTTTAAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGCAAATTCTGATTTACTGAAAAGCTACGGTCTTGGCCATGAAGACTGCATAACTAAGATGAGGTTGATTTCTTTGATGGATCTTGGTTCTGATGAATCTGGACAGATTCCTTACGGTGTTATCAGAGATACTCTTAAGATTAATGATGATGAAGTTGAACTTTGGGTGGTAAAGGCAATAACTGCCAAGTTAATGGACTGTAAAATGGACCAGATGAATCAAGTGGTGATTGTGAGCCGCTGTACTCTCAGAGTATTTGGGGAAGAACAATGGCTTACACTAAGAACAAAGTTAGCAACTTGGAGGGGTAATATTGCAAACGTTATCAGCACCATTCGAGCTAACAGGATAGCTGACGATGGATCACAGGCAGTGCAAGGCTTAGTTATTCGTTAG

Protein Analysis

411

Amino Acids

46.06

Weight (kDa)

5.26

Isoelectric Point (pI)

27.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 282 - 359 1.6e-11 PCI domain
eIF3m_C_helix PF18005 363 - 391 9.4e-13 eIF3 subunit M, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 144
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 414
AccII CGCG 1 cut(s) 354
AciI CCGC 2 cut(s) 36, 1075
AclI AACGTT 1 cut(s) 1158
AclWI GGATC 4 cut(s) 26, 524, 924, 1207
AcoI YGGCCR 3 cut(s) 42, 85, 871
AcsI RAATTY 2 cut(s) 596, 841
AcuI CTGAAG 1 cut(s) 147
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 4 cut(s) 377, 611, 672, 1081
AflII CTTAAG 1 cut(s) 971
AflIII ACRYGT 2 cut(s) 460, 705
AgsI TTSAA 5 cut(s) 370, 478, 499, 595, 995
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 450, 482
AluBI AGCT 7 cut(s) 67, 304, 668, 784, 861, 1178, 1190
AluI AGCT 7 cut(s) 67, 304, 668, 784, 861, 1178, 1190
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 4 cut(s) 26, 524, 924, 1207
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 6 cut(s) 42, 75, 85, 696, 774, 871
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 2 cut(s) 596, 841
AseI ATTAAT 1 cut(s) 978
AspLEI GCGC 2 cut(s) 354, 427
AspS9I GGNCC 3 cut(s) 75, 697, 1045
AsuHPI GGTGA 3 cut(s) 49, 641, 1075
AvaII GGWCC 1 cut(s) 1045
BalI TGGCCA 1 cut(s) 873
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 1 cut(s) 69
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 823
BccI CCATC 3 cut(s) 289, 907, 1190
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 3 cut(s) 29, 142, 176
BciT130I CCWGG 1 cut(s) 73
BciVI GTATCC 1 cut(s) 751
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 738
BfrI CTTAAG 1 cut(s) 971
BfuAI ACCTGC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 751
BglII AGATCT 2 cut(s) 223, 792
BisI GCNGC 2 cut(s) 837, 1075
BlpI GCTNAGC 1 cut(s) 99
BlsI GCNGC 2 cut(s) 838, 1076
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 1045
BmgT120I GGNCC 3 cut(s) 75, 697, 1045
BmiI GGNNCC 1 cut(s) 699
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 625, 805
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 2 cut(s) 407, 770
Bpu10I CCTNAGC 1 cut(s) 192
Bpu1102I GCTNAGC 1 cut(s) 99
BpuEI CTTGAG 3 cut(s) 248, 311, 439
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 24, 60, 72
Bse118I RCCGGY 2 cut(s) 83, 402
Bse1I ACTGG 2 cut(s) 390, 753
Bse3DI GCAATG 1 cut(s) 546
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 24, 60, 72
BseGI GGATG 2 cut(s) 465, 820
BseMI GCAATG 1 cut(s) 546
BseMII CTCAG 4 cut(s) 90, 183, 818, 1099
BseNI ACTGG 2 cut(s) 390, 753
BseXI GCAGC 1 cut(s) 823
BsgI GTGCAG 1 cut(s) 330
Bsh1236I CGCG 1 cut(s) 354
BshFI GGCC 6 cut(s) 44, 77, 87, 698, 776, 873
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 2 cut(s) 84, 403
BsmAI GTCTC 1 cut(s) 217
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 6 cut(s) 44, 77, 87, 698, 776, 873
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 1 cut(s) 69
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
Bsp1720I GCTNAGC 1 cut(s) 99
BspACI CCGC 2 cut(s) 36, 1075
BspANI GGCC 6 cut(s) 44, 77, 87, 698, 776, 873
BspCNI CTCAG 4 cut(s) 91, 184, 817, 1098
BspFNI CGCG 1 cut(s) 354
BspLI GGNNCC 1 cut(s) 699
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 4 cut(s) 26, 524, 924, 1207
BspTI CTTAAG 1 cut(s) 971
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 546
BsrFI RCCGGY 2 cut(s) 83, 402
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 2 cut(s) 390, 753
BssAI RCCGGY 2 cut(s) 83, 402
BssECI CCNNGG 3 cut(s) 24, 60, 72
BssMI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 5 cut(s) 10, 244, 866, 953, 1037
BstACI GRCGYC 1 cut(s) 81
BstAFI CTTAAG 1 cut(s) 971
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 375
BstC8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
BstDEI CTNAG 9 cut(s) 99, 192, 409, 762, 804, 891, 1085, 1118, 1219
BstF5I GGATG 2 cut(s) 465, 820
BstFNI CGCG 1 cut(s) 354
BstHHI GCGC 2 cut(s) 354, 427
BstKTI GATC 7 cut(s) 34, 226, 519, 526, 795, 919, 1202
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
BstMWI GCNNNNNNNGC 3 cut(s) 349, 730, 1019
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 3 cut(s) 464, 709, 770
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 738
BstUI CGCG 1 cut(s) 354
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 5 cut(s) 31, 223, 516, 792, 916
BstXI CCANNNNNNTGG 2 cut(s) 613, 1030
BstYI RGATCY 5 cut(s) 31, 223, 516, 792, 916
BsuI GTATCC 1 cut(s) 751
BsuRI GGCC 6 cut(s) 44, 77, 87, 698, 776, 873
BtsCI GGATG 2 cut(s) 465, 820
BtsI GCAGTG 2 cut(s) 347, 1215
BtsIMutI CAGTG 4 cut(s) 240, 347, 719, 1215
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
CaiI CAGNNNCTG 1 cut(s) 811
CfoI GCGC 2 cut(s) 354, 427
Cfr10I RCCGGY 2 cut(s) 83, 402
Cfr13I GGNCC 3 cut(s) 75, 697, 1045
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 376, 610, 671, 1080
CviAII CATG 4 cut(s) 461, 706, 767, 875
CviQI GTAC 4 cut(s) 376, 610, 671, 1080
DdeI CTNAG 9 cut(s) 99, 192, 409, 762, 804, 891, 1085, 1118, 1219
DpnI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1201
DpnII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
DraI TTTAAA 1 cut(s) 789
EaeI YGGCCR 3 cut(s) 42, 85, 871
Ecl136II GAGCTC 1 cut(s) 67
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 1045
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 1 cut(s) 147
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 4 cut(s) 464, 709, 770, 878
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FatI CATG 4 cut(s) 460, 705, 766, 874
FauI CCCGC 1 cut(s) 43
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 837, 1075
FokI GGATG 2 cut(s) 452, 827
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 837, 1075
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 353, 426
GluI GCNGC 2 cut(s) 837, 1075
GsuI CTGGAG 2 cut(s) 407, 770
HaeIII GGCC 6 cut(s) 44, 77, 87, 698, 776, 873
HapII CCGG 2 cut(s) 84, 403
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 354, 427
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 4 cut(s) 464, 709, 770, 878
Hin6I GCGC 2 cut(s) 352, 425
HinP1I GCGC 2 cut(s) 352, 425
HindIII AAGCTT 1 cut(s) 302
HinfI GANTC 6 cut(s) 54, 587, 802, 932, 943, 1054
HpaII CCGG 2 cut(s) 84, 403
HphI GGTGA 3 cut(s) 49, 641, 1075
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 227, 278, 601, 936
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 2 cut(s) 50, 83
HpyAV CCTTC 4 cut(s) 442, 480, 688, 748
HpyCH4III ACNGT 5 cut(s) 10, 244, 866, 953, 1037
HpyCH4IV ACGT 2 cut(s) 255, 1158
HpyF10VI GCNNNNNNNGC 3 cut(s) 349, 730, 1019
HpyF3I CTNAG 9 cut(s) 99, 192, 409, 762, 804, 891, 1085, 1118, 1219
HpySE526I ACGT 2 cut(s) 255, 1158
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 4 cut(s) 464, 709, 770, 878
HspAI GCGC 2 cut(s) 352, 425
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
LmnI GCTCC 1 cut(s) 64
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 2 cut(s) 625, 805
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 255, 1158
MaeIII GTNAC 4 cut(s) 109, 171, 259, 335
MalI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1201
MbiI CCGCTC 1 cut(s) 38
MboI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
MboII GAAGA 4 cut(s) 41, 644, 890, 1112
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 5 cut(s) 31, 223, 516, 792, 916
MhlI GDGCHC 1 cut(s) 69
MlsI TGGCCA 1 cut(s) 873
MluCI AATT 4 cut(s) 430, 596, 678, 841
MluNI TGGCCA 1 cut(s) 873
MlyI GAGTC 2 cut(s) 596, 796
MmeI TCCRAC 1 cut(s) 249
Mox20I TGGCCA 1 cut(s) 873
Mph1103I ATGCAT 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 83
MscI TGGCCA 1 cut(s) 873
MseI TTAA 5 cut(s) 429, 788, 972, 978, 1028
Msp20I TGGCCA 1 cut(s) 873
MspA1I CMGCKG 1 cut(s) 1077
MspCI CTTAAG 1 cut(s) 971
MspI CCGG 2 cut(s) 84, 403
MspR9I CCNGG 1 cut(s) 73
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 354
MwoI GCNNNNNNNGC 3 cut(s) 349, 730, 1019
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 4 cut(s) 464, 709, 770, 878
NlaIV GGNNCC 1 cut(s) 699
NmuCI GTSAC 2 cut(s) 171, 335
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 3 cut(s) 464, 709, 770
PaeI GCATGC 1 cut(s) 770
PciI ACATGT 2 cut(s) 460, 705
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 87
PctI GAATGC 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 54, 932, 943, 1054
PkrI GCNGC 2 cut(s) 838, 1076
PleI GAGTC 2 cut(s) 595, 796
PpsI GAGTC 2 cut(s) 595, 796
PscI ACATGT 2 cut(s) 460, 705
PshBI ATTAAT 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 1158
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 699
PspPI GGNCC 3 cut(s) 75, 697, 1045
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 5 cut(s) 31, 223, 516, 792, 916
RsaI GTAC 4 cut(s) 377, 611, 672, 1081
RsaNI GTAC 4 cut(s) 376, 610, 671, 1080
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 429, 788, 972, 978, 1028
SatI GCNGC 2 cut(s) 837, 1075
Sau3AI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
Sau96I GGNCC 3 cut(s) 75, 697, 1045
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 2 cut(s) 596, 796
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 1 cut(s) 69
SfaNI GCATC 2 cut(s) 625, 805
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 1045
SmlI CTYRAG 4 cut(s) 227, 290, 418, 971
SmoI CTYRAG 4 cut(s) 227, 290, 418, 971
SphI GCATGC 1 cut(s) 770
Sse9I AATT 4 cut(s) 430, 596, 678, 841
SsiI CCGC 2 cut(s) 36, 1075
SspI AATATT 2 cut(s) 511, 1150
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 5 cut(s) 10, 244, 866, 953, 1037
TaiI ACGT 2 cut(s) 258, 1161
TaqI TCGA 2 cut(s) 162, 1174
TasI AATT 4 cut(s) 430, 596, 678, 841
TatI WGTACW 3 cut(s) 375, 609, 1079
TauI GCSGC 1 cut(s) 1077
TfiI GAWTC 4 cut(s) 54, 932, 943, 1054
Tru1I TTAA 5 cut(s) 429, 788, 972, 978, 1028
Tru9I TTAA 5 cut(s) 429, 788, 972, 978, 1028
TscAI CASTG 4 cut(s) 247, 354, 719, 1215
TseFI GTSAC 2 cut(s) 171, 335
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 2 cut(s) 171, 335
TspDTI ATGAA 6 cut(s) 297, 462, 891, 945, 1002, 1067
TspRI CASTG 4 cut(s) 247, 354, 719, 1215
Vha464I CTTAAG 1 cut(s) 971
VpaK11BI GGWCC 1 cut(s) 1045
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 2 cut(s) 596, 841
XceI RCATGY 3 cut(s) 464, 709, 770
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.