Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0038644.1

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

1446 .. 3612

Gene Structure 2167 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0038644.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

atggcagaacttatatctggaaaggttacacagcaaccaagtgacaaacctgcatcgcgcttaaacattttgttcaatctgtacagcctactggaggacccatatagtcggttctctgtttacttgagcgctctaaatttggtcatctatggaaagctatttcttaccatatctaatgttttaaaagaacgtaaaagcttggcaaaggagtctatcaagttcctaactaagtacttggcaacattttctggcgaagatgcacatgttttgagccaagccaaggtcagctgtttcaaacctcaagataattggcatttggctcagatgttcctcgtctttctatgtgatttgttagatacgcctgttgtagcgcagtcggagaaggatgctaaacatgcattggcatatcagcttttgaaggtatttttgacccagaggctggatgcgtacttggagtttcaggcagcaaattctactctgctacaaagctgtggtctggtccatgaagattgtattactaagattaggttgatttcattggtggatctgggctgtgatgaatctggccgaattccttatagtctcattagagatacacttcagattaatgatgatgaagtggaaccttgggtagttaaggctataacagccaagttattggactgtaagatggaccagatgaatgaagttgtacttgtaacccgctctactcagcgtgtgtttggcaaggagcaatggcataccctcaagacaaagctagcatcttggagggtatccccgatcatcaacaaccttgtgataaagctcctcaaaatggagaaaattaatgacagccatctgaaaatccgggtcgaaaagaactgcttggaactcgaacccgaagccaaacgggttggcgagcccagtataaaaacccagaaatctcaattgaaaacccaattcccagttcacatcaaaacgccaccgaatggaagccctaaattccacccagatgcagtttatggtaaaatgggtgatctctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

340

Amino Acids

38.58

Weight (kDa)

8.79

Isoelectric Point (pI)

32.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	58
AccB7I	CCANNNNNTGG	2 cut(s)	439, 968
AccBSI	CCGCTC	1 cut(s)	705
AccII	CGCG	1 cut(s)	58
AciI	CCGC	1 cut(s)	703
AclWI	GGATC	1 cut(s)	552
AcoI	YGGCCR	1 cut(s)	565
AcsI	RAATTY	4 cut(s)	136, 469, 570, 980
AcuI	CTGAAG	1 cut(s)	584
AfaI	GTAC	4 cut(s)	83, 233, 449, 693
AfeI	AGCGCT	1 cut(s)	130
AfiI	CCNNNNNNNGG	5 cut(s)	94, 280, 439, 814, 968
AflIII	ACRYGT	1 cut(s)	262
AgsI	TTSAA	4 cut(s)	76, 295, 418, 931
AjuI	GAANNNNNNNTTGG	2 cut(s)	930, 962
AluBI	AGCT	7 cut(s)	157, 198, 288, 412, 489, 757, 805
AluI	AGCT	7 cut(s)	157, 198, 288, 412, 489, 757, 805
Alw26I	GTCTC	1 cut(s)	587
AlwI	GGATC	1 cut(s)	552
AlwNI	CAGNNNCTG	1 cut(s)	439
Aor51HI	AGCGCT	1 cut(s)	130
AoxI	GGCC	1 cut(s)	565
ApeKI	GCWGC	1 cut(s)	464
ApoI	RAATTY	4 cut(s)	136, 469, 570, 980
ArsI	GACNNNNNNTTYG	2 cut(s)	478, 510
AseI	ATTAAT	2 cut(s)	606, 825
AspLEI	GCGC	3 cut(s)	60, 131, 373
AspS9I	GGNCC	3 cut(s)	97, 499, 673
AsuC2I	CCSGG	1 cut(s)	848
AsuNHI	GCTAGC	1 cut(s)	757
AvaII	GGWCC	3 cut(s)	97, 499, 673
BaeI	ACNNNNGTAYC	2 cut(s)	348, 381
BanII	GRGCYC	1 cut(s)	903
BbvI	GCAGC	1 cut(s)	476
BccI	CCATC	2 cut(s)	664, 843
BciVI	GTATCC	1 cut(s)	784
BcnI	CCSGG	1 cut(s)	848
BcoDI	GTCTC	1 cut(s)	587
BfaI	CTAG	2 cut(s)	758, 1021
BfoI	RGCGCY	1 cut(s)	132
BfuAI	ACCTGC	1 cut(s)	58
BfuI	GTATCC	1 cut(s)	784
BisI	GCNGC	1 cut(s)	465
BlsI	GCNGC	1 cut(s)	466
BmcAI	AGTACT	1 cut(s)	233
Bme1390I	CCNGG	1 cut(s)	848
Bme18I	GGWCC	3 cut(s)	97, 499, 673
BmgT120I	GGNCC	3 cut(s)	97, 499, 673
BmiI	GGNNCC	2 cut(s)	99, 624
BmrFI	CCNGG	1 cut(s)	848
BmrI	ACTGGG	2 cut(s)	897, 938
BmsI	GCATC	6 cut(s)	62, 247, 376, 433, 770, 982
BmtI	GCTAGC	1 cut(s)	761
BmuI	ACTGGG	2 cut(s)	897, 938
BpmI	CTGGAG	1 cut(s)	113
BpuEI	CTTGAG	3 cut(s)	145, 285, 731
BpuMI	CCSGG	1 cut(s)	848
BsaJI	CCNNGG	2 cut(s)	279, 626
Bsc4I	CCNNNNNNNGG	5 cut(s)	94, 280, 439, 814, 968
Bse1I	ACTGG	3 cut(s)	96, 903, 944
Bse3DI	GCAATG	1 cut(s)	740
BseDI	CCNNGG	2 cut(s)	279, 626
BseGI	GGATG	2 cut(s)	391, 448
BseLI	CCNNNNNNNGG	5 cut(s)	94, 280, 439, 814, 968
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	2 cut(s)	335, 725
BseNI	ACTGG	3 cut(s)	96, 903, 944
BseRI	GAGGAG	1 cut(s)	797
BseXI	GCAGC	1 cut(s)	476
Bsh1236I	CGCG	1 cut(s)	58
BshFI	GGCC	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	847
BslI	CCNNNNNNNGG	5 cut(s)	94, 280, 439, 814, 968
BsmAI	GTCTC	1 cut(s)	587
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	1 cut(s)	903
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	3 cut(s)	544, 780, 1015
BspACI	CCGC	1 cut(s)	703
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	2 cut(s)	334, 724
BspFNI	CGCG	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	99, 624
BspMI	ACCTGC	1 cut(s)	58
BspOI	GCTAGC	1 cut(s)	761
BspPI	GGATC	1 cut(s)	552
BsrBI	CCGCTC	1 cut(s)	705
BsrDI	GCAATG	1 cut(s)	740
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	3 cut(s)	96, 903, 944
BssECI	CCNNGG	2 cut(s)	279, 626
BssMI	GATC	3 cut(s)	544, 780, 1015
BssT1I	CCWWGG	2 cut(s)	279, 626
Bst4CI	ACNGT	1 cut(s)	665
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	2 cut(s)	759, 899
BstDEI	CTNAG	4 cut(s)	228, 321, 519, 711
BstENI	CCTNNNNNAGG	1 cut(s)	92
BstF5I	GGATG	2 cut(s)	391, 448
BstFNI	CGCG	1 cut(s)	58
BstH2I	RGCGCY	1 cut(s)	132
BstHHI	GCGC	3 cut(s)	60, 131, 373
BstKTI	GATC	3 cut(s)	547, 783, 1018
BstMAI	GTCTC	1 cut(s)	587
BstMBI	GATC	3 cut(s)	544, 780, 1015
BstMWI	GCNNNNNNNGC	2 cut(s)	395, 647
BstNSI	RCATGY	2 cut(s)	266, 398
BstSCI	CCNGG	1 cut(s)	846
BstUI	CGCG	1 cut(s)	58
BstV1I	GCAGC	1 cut(s)	476
BstX2I	RGATCY	1 cut(s)	544
BstXI	CCANNNNNNTGG	1 cut(s)	658
BstYI	RGATCY	1 cut(s)	544
BsuI	GTATCC	1 cut(s)	784
BsuRI	GGCC	1 cut(s)	567
BtgZI	GCGATG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	391, 448
BveI	ACCTGC	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	759, 899
CaiI	CAGNNNCTG	1 cut(s)	439
CfoI	GCGC	3 cut(s)	60, 131, 373
Cfr13I	GGNCC	3 cut(s)	97, 499, 673
Csp6I	GTAC	4 cut(s)	82, 232, 448, 692
CviAII	CATG	3 cut(s)	263, 395, 503
CviQI	GTAC	4 cut(s)	82, 232, 448, 692
DdeI	CTNAG	4 cut(s)	228, 321, 519, 711
DpnI	GATC	3 cut(s)	546, 782, 1017
DpnII	GATC	3 cut(s)	544, 780, 1015
DraI	TTTAAA	1 cut(s)	183
EaeI	YGGCCR	1 cut(s)	565
Eco130I	CCWWGG	2 cut(s)	279, 626
Eco24I	GRGCYC	1 cut(s)	903
Eco47I	GGWCC	3 cut(s)	97, 499, 673
Eco47III	AGCGCT	1 cut(s)	130
Eco57I	CTGAAG	1 cut(s)	584
EcoNI	CCTNNNNNAGG	1 cut(s)	92
EcoO109I	RGGNCCY	1 cut(s)	97
EcoRI	GAATTC	1 cut(s)	570
EcoT14I	CCWWGG	2 cut(s)	279, 626
EcoT22I	ATGCAT	1 cut(s)	400
EcoT38I	GRGCYC	1 cut(s)	903
ErhI	CCWWGG	2 cut(s)	279, 626
FaeI	CATG	3 cut(s)	266, 398, 506
FalI	AAGNNNNNCTT	4 cut(s)	678, 710, 848, 880
FatI	CATG	3 cut(s)	262, 394, 502
FauI	CCCGC	1 cut(s)	710
Fnu4HI	GCNGC	1 cut(s)	465
FokI	GGATG	2 cut(s)	398, 455
FriOI	GRGCYC	1 cut(s)	903
Fsp4HI	GCNGC	1 cut(s)	465
FspBI	CTAG	2 cut(s)	758, 1021
GlaI	GCGC	3 cut(s)	59, 130, 372
GluI	GCNGC	1 cut(s)	465
GsuI	CTGGAG	1 cut(s)	113
HaeII	RGCGCY	1 cut(s)	132
HaeIII	GGCC	1 cut(s)	567
HapII	CCGG	1 cut(s)	847
HhaI	GCGC	3 cut(s)	60, 131, 373
Hin1II	CATG	3 cut(s)	266, 398, 506
Hin6I	GCGC	3 cut(s)	58, 129, 371
HinP1I	GCGC	3 cut(s)	58, 129, 371
HindIII	AAGCTT	1 cut(s)	196
HinfI	GANTC	2 cut(s)	209, 560
HpaII	CCGG	1 cut(s)	847
Hpy166II	GTNNAC	2 cut(s)	121, 949
Hpy188I	TCNGA	4 cut(s)	324, 379, 603, 840
Hpy188III	TCNNGA	3 cut(s)	18, 302, 748
Hpy8I	GTNNAC	2 cut(s)	121, 949
HpyAV	CCTTC	2 cut(s)	376, 412
HpyCH4III	ACNGT	1 cut(s)	665
HpyCH4IV	ACGT	1 cut(s)	190
HpyCH4V	TGCA	4 cut(s)	53, 260, 398, 995
HpyF10VI	GCNNNNNNNGC	2 cut(s)	395, 647
HpyF3I	CTNAG	4 cut(s)	228, 321, 519, 711
HpySE526I	ACGT	1 cut(s)	190
Hsp92II	CATG	3 cut(s)	266, 398, 506
HspAI	GCGC	3 cut(s)	58, 129, 371
Kzo9I	GATC	3 cut(s)	544, 780, 1015
LmnI	GCTCC	2 cut(s)	730, 810
Lsp1109I	GCAGC	1 cut(s)	476
LweI	GCATC	6 cut(s)	62, 247, 376, 433, 770, 982
MaeI	CTAG	2 cut(s)	758, 1021
MaeII	ACGT	1 cut(s)	190
MaeIII	GTNAC	3 cut(s)	25, 41, 697
MalI	GATC	3 cut(s)	546, 782, 1017
MbiI	CCGCTC	1 cut(s)	705
MboI	GATC	3 cut(s)	544, 780, 1015
MboII	GAAGA	2 cut(s)	266, 518
MfeI	CAATTG	1 cut(s)	926
MflI	RGATCY	1 cut(s)	544
MhlI	GDGCHC	1 cut(s)	903
MluCI	AATT	8 cut(s)	136, 307, 469, 570, 822, 926, 938, 980
MlyI	GAGTC	1 cut(s)	218
MmeI	TCCRAC	1 cut(s)	357
MnlI	CCTC	7 cut(s)	88, 309, 341, 429, 755, 762, 818
Mph1103I	ATGCAT	1 cut(s)	400
MseI	TTAA	5 cut(s)	62, 182, 606, 636, 825
MslI	CAYNNNNRTG	1 cut(s)	990
MspA1I	CMGCKG	1 cut(s)	288
MspI	CCGG	1 cut(s)	847
MspR9I	CCNGG	1 cut(s)	848
MunI	CAATTG	1 cut(s)	926
MvnI	CGCG	1 cut(s)	58
MwoI	GCNNNNNNNGC	2 cut(s)	395, 647
NciI	CCSGG	1 cut(s)	848
NdeII	GATC	3 cut(s)	544, 780, 1015
NheI	GCTAGC	1 cut(s)	757
NlaIII	CATG	3 cut(s)	266, 398, 506
NlaIV	GGNNCC	2 cut(s)	99, 624
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	400
NspI	RCATGY	2 cut(s)	266, 398
PciI	ACATGT	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	560
PflMI	CCANNNNNTGG	2 cut(s)	439, 968
PkrI	GCNGC	1 cut(s)	466
PleI	GAGTC	1 cut(s)	217
PpsI	GAGTC	1 cut(s)	217
PpuMI	RGGWCCY	1 cut(s)	97
PscI	ACATGT	1 cut(s)	262
PshBI	ATTAAT	2 cut(s)	606, 825
Psp5II	RGGWCCY	1 cut(s)	97
PspN4I	GGNNCC	2 cut(s)	99, 624
PspPI	GGNCC	3 cut(s)	97, 499, 673
PspPPI	RGGWCCY	1 cut(s)	97
PstNI	CAGNNNCTG	1 cut(s)	439
PsuI	RGATCY	1 cut(s)	544
PvuII	CAGCTG	1 cut(s)	288
RsaI	GTAC	4 cut(s)	83, 233, 449, 693
RsaNI	GTAC	4 cut(s)	82, 232, 448, 692
RseI	CAYNNNNRTG	1 cut(s)	990
SaqAI	TTAA	5 cut(s)	62, 182, 606, 636, 825
SatI	GCNGC	1 cut(s)	465
Sau3AI	GATC	3 cut(s)	544, 780, 1015
Sau96I	GGNCC	3 cut(s)	97, 499, 673
ScaI	AGTACT	1 cut(s)	233
SchI	GAGTC	1 cut(s)	218
ScrFI	CCNGG	1 cut(s)	848
SduI	GDGCHC	1 cut(s)	903
SfaNI	GCATC	6 cut(s)	62, 247, 376, 433, 770, 982
SinI	GGWCC	3 cut(s)	97, 499, 673
SmiMI	CAYNNNNRTG	1 cut(s)	990
SmlI	CTYRAG	3 cut(s)	124, 300, 746
SmoI	CTYRAG	3 cut(s)	124, 300, 746
Sse9I	AATT	8 cut(s)	136, 307, 469, 570, 822, 926, 938, 980
SsiI	CCGC	1 cut(s)	703
SspMI	CTAG	2 cut(s)	758, 1021
StyD4I	CCNGG	1 cut(s)	846
StyI	CCWWGG	2 cut(s)	279, 626
TaaI	ACNGT	1 cut(s)	665
TaiI	ACGT	1 cut(s)	193
TaqI	TCGA	2 cut(s)	852, 873
TasI	AATT	8 cut(s)	136, 307, 469, 570, 822, 926, 938, 980
TatI	WGTACW	3 cut(s)	81, 231, 691
TfiI	GAWTC	1 cut(s)	560
Tru1I	TTAA	5 cut(s)	62, 182, 606, 636, 825
Tru9I	TTAA	5 cut(s)	62, 182, 606, 636, 825
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	464
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	6 cut(s)	519, 525, 573, 630, 695, 699
Van91I	CCANNNNNTGG	2 cut(s)	439, 968
VpaK11BI	GGWCC	3 cut(s)	97, 499, 673
VspI	ATTAAT	2 cut(s)	606, 825
XagI	CCTNNNNNAGG	1 cut(s)	92
XapI	RAATTY	4 cut(s)	136, 469, 570, 980
XceI	RCATGY	2 cut(s)	266, 398
XspI	CTAG	2 cut(s)	758, 1021
ZrmI	AGTACT	1 cut(s)	233
Zsp2I	ATGCAT	1 cut(s)	400

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.