Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

8004494 .. 8010254

Gene Structure 5761 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00085730.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1659 bp

ATGGGCCGCGGAGTCAGCTGTGGTGGTGGACAAAGTTCATTGGGATACTTGTTTGGAGGTGGAGCAGAGGCTGTTCCAAACAACACTCGTTCTCTGAATAGGACTTCTTCTGCTAGCTCGATACCAATTGAAATGCAACCTCCAGCAGGCATTCCCACAAAAAGGGATGCAGTTATTGATAAGCAAGTCCCAGCTGCAAGCAATCCCACAAACACAATACCGTCTCCGAATAAGAGTAGTGCTCCTGCTACAAATCCAATTGACAAGAATGTTCCAGCAGGCATTCAGAGCAATCCCACAAATAATTTCTTGCGTTTGGATGGCCAGAACTGTGGCAACTTCATCACGGATCGACCATCTAGGAAGGGTTTTGAAGCTGCTGCGAAAGAAAGAGAAAACCCAATCGCAGCTGCACAGAGCTTCAACAATGACGACGATAGTCCCGACCTCCGAGGAAGATCCGGCTCTCTCGCCGTCGTCCGATACGCCTCCGAGCAAGCCTGGGCCGACGCCGGCGCTGAGGTTGCGGACGAGCATGTTAAAAGACTCTGTGACGAAGCCATACAATGTATGAAAGACGCCAGGTGGTTCGATTTGGTGTCACTTATGCTAACTTCAGCTGATGTGATACTATCAAAGGTCTCAGACAAAGATCTTGAGTGCATCTTCACTGTTATCTGCAATGTTGTTACAAATTCTGAAAGTCTAGATGAAATACGTCAGATGGCAGAACTTATATCTGGAAAGGTTACACAGCAACCAAGTGACAAAGCTGCATCGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGGACCCATATAGTCGGTTCGCTGTTTACTTGAGCGCTCTAAATTTGGCCATCAATGGAAAGGTCACTGAGCATGTCCTCCCTTCATTCAAACAGATAGATAGTTTCTTGAAAGAGTGGAATATTGGGGTCTCGGACCAGAGGCGGCTATTTCTTACCATATCTAATGTTTTAAAAGAACATAAAAGCTTGGCAAAGGAGTCTTTCAAGTTCCTAACTAAATACTTGGCAACATTTTCTGGCGAAGATGCACATGTTTTGAGCCAAGCCAAGGATGAGGCTGTTCGCACAATTGTGGAATTTGTGAAGACACCAGACATGTTTCAGTGTGATTTGCTCGATATGCCTGCTGTAGCGCAGTTGGAGAAGGATGCTAAACATGCATTGGCATATCAGCTTTTGAAGGTATTTTTGACCCAGAGGCTGGATGCATACTTGGAGTTTCAGGCAGCAAATTCTTCTCTGCTACAAAGCTACGGTCTGGTCCATGAAGATTGTATTACTAAGATGAGGTTGATTTCATTGATGGATCTTGGCTCTGACGAATCGGGAAAAATTCCTTATAGTCTCATCAGAGATACACTTCAGATTAATGATGATGAAGTGGAACCTTGGGTGGTTAAGGCTATAACAGCCAAGTTATTGGACTGTAAGATGGACCAGATGAATGAAGTTGTAATTGTAACCCGCTCTACTCAGCGTGTGTTTGGCAAGGAGCAATGGCATACCCTTAAGACAAAGCTAGCATCTTGGAGGGGCAATATTGCACATGTCATCAGCACTGTTCAAGCTAACAGGCCCGCTGAAGATGGTGCCCAGGCAGCTCAAGGCTTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

552

Amino Acids

60.72

Weight (kDa)

5.77

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	425 - 501	3.9e-11	PCI domain
eIF3m_C_helix	PF18005	506 - 534	7.6e-12	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1628
AccB7I	CCANNNNNTGG	1 cut(s)	1240
AccBSI	CCGCTC	1 cut(s)	1506
AccII	CGCG	2 cut(s)	9, 781
AciI	CCGC	6 cut(s)	7, 9, 527, 961, 1504, 1617
AclWI	GGATC	3 cut(s)	357, 453, 1353
AcoI	YGGCCR	2 cut(s)	322, 864
AcsI	RAATTY	5 cut(s)	694, 859, 1115, 1270, 1371
AcuI	CTGAAG	3 cut(s)	600, 1385, 1641
AcyI	GRCGYC	2 cut(s)	510, 579
AfaI	GTAC	1 cut(s)	806
AfeI	AGCGCT	1 cut(s)	853
AfiI	CCNNNNNNNGG	5 cut(s)	146, 162, 817, 1087, 1240
AflII	CTTAAG	1 cut(s)	1547
AflIII	ACRYGT	3 cut(s)	1069, 1134, 1585
AgsI	TTSAA	9 cut(s)	131, 374, 424, 799, 907, 928, 1024, 1219, 1604
AjnI	CCWGG	3 cut(s)	500, 581, 1632
AleI	CACNNNNGTG	1 cut(s)	1109
Alw21I	GWGCWC	1 cut(s)	244
Alw26I	GTCTC	4 cut(s)	228, 646, 952, 1388
AlwI	GGATC	3 cut(s)	357, 453, 1353
AlwNI	CAGNNNCTG	2 cut(s)	71, 1240
Aor51HI	AGCGCT	1 cut(s)	853
AoxI	GGCC	5 cut(s)	4, 322, 504, 864, 1613
ApeKI	GCWGC	8 cut(s)	194, 377, 380, 407, 410, 773, 1265, 1637
ApoI	RAATTY	5 cut(s)	694, 859, 1115, 1270, 1371
ArsI	GACNNNNNNTTYG	2 cut(s)	1279, 1311
AseI	ATTAAT	1 cut(s)	1407
AspLEI	GCGC	4 cut(s)	518, 783, 854, 1174
AspS9I	GGNCC	7 cut(s)	4, 504, 820, 952, 1300, 1474, 1614
AsuNHI	GCTAGC	2 cut(s)	113, 1558
AvaII	GGWCC	4 cut(s)	820, 952, 1300, 1474
BaeGI	GKGCMC	1 cut(s)	1633
BalI	TGGCCA	2 cut(s)	324, 866
BanI	GGYRCC	1 cut(s)	1628
BbsI	GAAGAC	1 cut(s)	1130
Bbv12I	GWGCWC	1 cut(s)	244
BbvCI	CCTCAGC	1 cut(s)	519
BbvI	GCAGC	8 cut(s)	181, 364, 367, 397, 419, 760, 1277, 1649
BccI	CCATC	7 cut(s)	314, 364, 718, 875, 1336, 1465, 1619
BceAI	ACGGC	1 cut(s)	458
BcgI	CGANNNNNNTGC	2 cut(s)	1145, 1179
BciT130I	CCWGG	3 cut(s)	502, 583, 1634
BciVI	GTATCC	1 cut(s)	38
BcoDI	GTCTC	4 cut(s)	228, 646, 952, 1388
BfaI	CTAG	4 cut(s)	114, 360, 707, 1559
BfmI	CTRYAG	1 cut(s)	1167
BfoI	RGCGCY	2 cut(s)	519, 855
BfrI	CTTAAG	1 cut(s)	1547
BfuI	GTATCC	1 cut(s)	38
BglII	AGATCT	1 cut(s)	652
Bme1390I	CCNGG	3 cut(s)	502, 583, 1634
Bme18I	GGWCC	4 cut(s)	820, 952, 1300, 1474
BmgT120I	GGNCC	7 cut(s)	4, 504, 820, 952, 1300, 1474, 1614
BmiI	GGNNCC	3 cut(s)	822, 1425, 1630
BmrFI	CCNGG	3 cut(s)	502, 583, 1634
BmsI	GCATC	7 cut(s)	157, 672, 785, 1054, 1177, 1234, 1571
BmtI	GCTAGC	2 cut(s)	117, 1562
BoxI	GACNNNNGTC	1 cut(s)	438
BpiI	GAAGAC	1 cut(s)	1130
BplI	GAGNNNNNCTC	2 cut(s)	226, 258
BpmI	CTGGAG	2 cut(s)	126, 836
Bpu10I	CCTNAGC	1 cut(s)	519
BpuEI	CTTGAG	3 cut(s)	677, 868, 1626
BsaHI	GRCGYC	2 cut(s)	510, 579
BsaI	GGTCTC	2 cut(s)	646, 952
BsaJI	CCNNGG	6 cut(s)	7, 451, 501, 1086, 1427, 1632
Bsc4I	CCNNNNNNNGG	5 cut(s)	146, 162, 817, 1087, 1240
Bse118I	RCCGGY	1 cut(s)	512
Bse1I	ACTGG	1 cut(s)	819
Bse3DI	GCAATG	2 cut(s)	688, 1541
BseBI	CCWGG	3 cut(s)	502, 583, 1634
BseDI	CCNNGG	6 cut(s)	7, 451, 501, 1086, 1427, 1632
BseGI	GGATG	5 cut(s)	172, 325, 1096, 1192, 1249
BseLI	CCNNNNNNNGG	5 cut(s)	146, 162, 817, 1087, 1240
BseMI	GCAATG	2 cut(s)	688, 1541
BseMII	CTCAG	4 cut(s)	510, 657, 876, 1526
BseNI	ACTGG	1 cut(s)	819
BseSI	GKGCMC	1 cut(s)	1633
BseXI	GCAGC	8 cut(s)	181, 364, 367, 397, 419, 760, 1277, 1649
BseYI	CCCAGC	1 cut(s)	190
BsgI	GTGCAG	1 cut(s)	396
Bsh1236I	CGCG	2 cut(s)	9, 781
BshFI	GGCC	5 cut(s)	6, 324, 506, 866, 1615
BshNI	GGYRCC	1 cut(s)	1628
BsiHKAI	GWGCWC	1 cut(s)	244
BsiSI	CCGG	2 cut(s)	462, 513
BslFI	GGGAC	2 cut(s)	173, 426
BslI	CCNNNNNNNGG	5 cut(s)	146, 162, 817, 1087, 1240
BsmAI	GTCTC	4 cut(s)	228, 646, 952, 1388
BsmBI	CGTCTC	1 cut(s)	228
BsmFI	GGGAC	2 cut(s)	173, 426
BsmI	GAATGC	2 cut(s)	150, 282
BsnI	GGCC	5 cut(s)	6, 324, 506, 866, 1615
Bso31I	GGTCTC	2 cut(s)	646, 952
Bsp1286I	GDGCHC	2 cut(s)	244, 1633
Bsp1407I	TGTACA	1 cut(s)	804
Bsp143I	GATC	4 cut(s)	349, 458, 652, 1345
BspACI	CCGC	6 cut(s)	7, 9, 527, 961, 1504, 1617
BspANI	GGCC	5 cut(s)	6, 324, 506, 866, 1615
BspCNI	CTCAG	4 cut(s)	511, 656, 877, 1525
BspFNI	CGCG	2 cut(s)	9, 781
BspLI	GGNNCC	3 cut(s)	822, 1425, 1630
BspOI	GCTAGC	2 cut(s)	117, 1562
BspPI	GGATC	3 cut(s)	357, 453, 1353
BspT107I	GGYRCC	1 cut(s)	1628
BspTI	CTTAAG	1 cut(s)	1547
BspTNI	GGTCTC	2 cut(s)	646, 952
BsrBI	CCGCTC	1 cut(s)	1506
BsrDI	GCAATG	2 cut(s)	688, 1541
BsrFI	RCCGGY	1 cut(s)	512
BsrGI	TGTACA	1 cut(s)	804
BsrI	ACTGG	1 cut(s)	819
BssAI	RCCGGY	1 cut(s)	512
BssECI	CCNNGG	6 cut(s)	7, 451, 501, 1086, 1427, 1632
BssMI	GATC	4 cut(s)	349, 458, 652, 1345
BssNI	GRCGYC	2 cut(s)	510, 579
BssT1I	CCWWGG	2 cut(s)	1086, 1427
Bst2UI	CCWGG	3 cut(s)	502, 583, 1634
Bst4CI	ACNGT	6 cut(s)	222, 332, 673, 1295, 1466, 1600
BstACI	GRCGYC	2 cut(s)	510, 579
BstAFI	CTTAAG	1 cut(s)	1547
BstAUI	TGTACA	1 cut(s)	804
BstC8I	GCNNGC	9 cut(s)	115, 148, 199, 280, 498, 514, 1164, 1560, 1617
BstDEI	CTNAG	5 cut(s)	519, 643, 885, 1320, 1512
BstDSI	CCRYGG	1 cut(s)	7
BstENI	CCTNNNNNAGG	2 cut(s)	144, 815
BstF5I	GGATG	5 cut(s)	172, 325, 1096, 1192, 1249
BstFNI	CGCG	2 cut(s)	9, 781
BstH2I	RGCGCY	2 cut(s)	519, 855
BstHHI	GCGC	4 cut(s)	518, 783, 854, 1174
BstKTI	GATC	4 cut(s)	352, 461, 655, 1348
BstMAI	GTCTC	4 cut(s)	228, 646, 952, 1388
BstMBI	GATC	4 cut(s)	349, 458, 652, 1345
BstMWI	GCNNNNNNNGC	7 cut(s)	15, 288, 524, 1159, 1196, 1448, 1637
BstNI	CCWGG	3 cut(s)	502, 583, 1634
BstNSI	RCATGY	6 cut(s)	539, 893, 1073, 1138, 1199, 1589
BstPAI	GACNNNNGTC	1 cut(s)	438
BstSCI	CCNGG	3 cut(s)	500, 581, 1632
BstSFI	CTRYAG	1 cut(s)	1167
BstSLI	GKGCMC	1 cut(s)	1633
BstUI	CGCG	2 cut(s)	9, 781
BstV1I	GCAGC	8 cut(s)	181, 364, 367, 397, 419, 760, 1277, 1649
BstV2I	GAAGAC	1 cut(s)	1130
BstX2I	RGATCY	3 cut(s)	458, 652, 1345
BstXI	CCANNNNNNTGG	2 cut(s)	332, 1459
BstYI	RGATCY	3 cut(s)	458, 652, 1345
BsuI	GTATCC	1 cut(s)	38
BsuRI	GGCC	5 cut(s)	6, 324, 506, 866, 1615
BtgI	CCRYGG	1 cut(s)	7
BtgZI	GCGATG	1 cut(s)	762
BtsCI	GGATG	5 cut(s)	172, 325, 1096, 1192, 1249
BtsIMutI	CAGTG	4 cut(s)	669, 882, 1148, 1596
Cac8I	GCNNGC	9 cut(s)	115, 148, 199, 280, 498, 514, 1164, 1560, 1617
CaiI	CAGNNNCTG	2 cut(s)	71, 1240
CfoI	GCGC	4 cut(s)	518, 783, 854, 1174
Cfr10I	RCCGGY	1 cut(s)	512
Cfr13I	GGNCC	7 cut(s)	4, 504, 820, 952, 1300, 1474, 1614
Cfr42I	CCGCGG	1 cut(s)	10
CseI	GACGC	2 cut(s)	518, 587
Csp6I	GTAC	1 cut(s)	805
CviAII	CATG	7 cut(s)	536, 890, 1070, 1135, 1196, 1304, 1586
CviQI	GTAC	1 cut(s)	805
DdeI	CTNAG	5 cut(s)	519, 643, 885, 1320, 1512
DpnI	GATC	4 cut(s)	351, 460, 654, 1347
DpnII	GATC	4 cut(s)	349, 458, 652, 1345
DraI	TTTAAA	1 cut(s)	990
EaeI	YGGCCR	2 cut(s)	322, 864
Eco130I	CCWWGG	2 cut(s)	1086, 1427
Eco31I	GGTCTC	2 cut(s)	646, 952
Eco47I	GGWCC	4 cut(s)	820, 952, 1300, 1474
Eco47III	AGCGCT	1 cut(s)	853
Eco57I	CTGAAG	3 cut(s)	600, 1385, 1641
EcoNI	CCTNNNNNAGG	2 cut(s)	144, 815
EcoO109I	RGGNCCY	1 cut(s)	820
EcoRII	CCWGG	3 cut(s)	500, 581, 1632
EcoT14I	CCWWGG	2 cut(s)	1086, 1427
EcoT22I	ATGCAT	2 cut(s)	1201, 1249
ErhI	CCWWGG	2 cut(s)	1086, 1427
Esp3I	CGTCTC	1 cut(s)	228
FaeI	CATG	7 cut(s)	539, 893, 1073, 1138, 1199, 1307, 1589
FaqI	GGGAC	2 cut(s)	173, 426
FatI	CATG	7 cut(s)	535, 889, 1069, 1134, 1195, 1303, 1585
FauI	CCCGC	2 cut(s)	1511, 1624
FokI	GGATG	5 cut(s)	179, 332, 1103, 1199, 1256
FspBI	CTAG	4 cut(s)	114, 360, 707, 1559
GlaI	GCGC	4 cut(s)	517, 782, 853, 1173
GsaI	CCCAGC	1 cut(s)	194
GsuI	CTGGAG	2 cut(s)	126, 836
HaeII	RGCGCY	2 cut(s)	519, 855
HaeIII	GGCC	5 cut(s)	6, 324, 506, 866, 1615
HapII	CCGG	2 cut(s)	462, 513
HgaI	GACGC	2 cut(s)	518, 587
HhaI	GCGC	4 cut(s)	518, 783, 854, 1174
Hin1I	GRCGYC	2 cut(s)	510, 579
Hin1II	CATG	7 cut(s)	539, 893, 1073, 1138, 1199, 1307, 1589
Hin6I	GCGC	4 cut(s)	516, 781, 852, 1172
HinP1I	GCGC	4 cut(s)	516, 781, 852, 1172
HindIII	AAGCTT	1 cut(s)	1003
HinfI	GANTC	4 cut(s)	12, 546, 1016, 1361
HpaII	CCGG	2 cut(s)	462, 513
Hpy166II	GTNNAC	2 cut(s)	29, 844
Hpy188III	TCNNGA	6 cut(s)	443, 656, 707, 741, 925, 1365
Hpy8I	GTNNAC	2 cut(s)	29, 844
Hpy99I	CGWCG	3 cut(s)	437, 479, 512
HpyAV	CCTTC	4 cut(s)	358, 909, 1177, 1213
HpyCH4III	ACNGT	6 cut(s)	222, 332, 673, 1295, 1466, 1600
HpyCH4IV	ACGT	1 cut(s)	718
HpyF10VI	GCNNNNNNNGC	7 cut(s)	15, 288, 524, 1159, 1196, 1448, 1637
HpyF3I	CTNAG	5 cut(s)	519, 643, 885, 1320, 1512
HpySE526I	ACGT	1 cut(s)	718
Hsp92I	GRCGYC	2 cut(s)	510, 579
Hsp92II	CATG	7 cut(s)	539, 893, 1073, 1138, 1199, 1307, 1589
HspAI	GCGC	4 cut(s)	516, 781, 852, 1172
KroI	GCCGGC	1 cut(s)	512
KroNI	GCCGGC	1 cut(s)	514
KspI	CCGCGG	1 cut(s)	10
Kzo9I	GATC	4 cut(s)	349, 458, 652, 1345
LmnI	GCTCC	3 cut(s)	62, 247, 1531
Lsp1109I	GCAGC	8 cut(s)	181, 364, 367, 397, 419, 760, 1277, 1649
LweI	GCATC	7 cut(s)	157, 672, 785, 1054, 1177, 1234, 1571
MaeI	CTAG	4 cut(s)	114, 360, 707, 1559
MaeII	ACGT	1 cut(s)	718
MaeIII	GTNAC	7 cut(s)	551, 600, 688, 748, 764, 880, 1498
MalI	GATC	4 cut(s)	351, 460, 654, 1347
MbiI	CCGCTC	1 cut(s)	1506
MboI	GATC	4 cut(s)	349, 458, 652, 1345
MboII	GAAGA	8 cut(s)	99, 468, 658, 1073, 1135, 1266, 1319, 1634
MfeI	CAATTG	3 cut(s)	126, 258, 1107
MflI	RGATCY	3 cut(s)	458, 652, 1345
MhlI	GDGCHC	2 cut(s)	244, 1633
MlsI	TGGCCA	2 cut(s)	324, 866
MluNI	TGGCCA	2 cut(s)	324, 866
MlyI	GAGTC	3 cut(s)	21, 540, 1025
MmeI	TCCRAC	1 cut(s)	1158
Mox20I	TGGCCA	2 cut(s)	324, 866
Mph1103I	ATGCAT	2 cut(s)	1201, 1249
MreI	CGCCGGCG	1 cut(s)	512
MroNI	GCCGGC	1 cut(s)	512
MscI	TGGCCA	2 cut(s)	324, 866
MseI	TTAA	6 cut(s)	540, 785, 989, 1407, 1437, 1548
MslI	CAYNNNNRTG	1 cut(s)	1109
Msp20I	TGGCCA	2 cut(s)	324, 866
MspA1I	CMGCKG	6 cut(s)	9, 18, 194, 410, 620, 1619
MspCI	CTTAAG	1 cut(s)	1547
MspI	CCGG	2 cut(s)	462, 513
MspR9I	CCNGG	3 cut(s)	502, 583, 1634
MunI	CAATTG	3 cut(s)	126, 258, 1107
Mva1269I	GAATGC	2 cut(s)	150, 282
MvaI	CCWGG	3 cut(s)	502, 583, 1634
MvnI	CGCG	2 cut(s)	9, 781
MwoI	GCNNNNNNNGC	7 cut(s)	15, 288, 524, 1159, 1196, 1448, 1637
NaeI	GCCGGC	1 cut(s)	514
NdeII	GATC	4 cut(s)	349, 458, 652, 1345
NgoMIV	GCCGGC	1 cut(s)	512
NheI	GCTAGC	2 cut(s)	113, 1558
NlaIII	CATG	7 cut(s)	539, 893, 1073, 1138, 1199, 1307, 1589
NlaIV	GGNNCC	3 cut(s)	822, 1425, 1630
NmuCI	GTSAC	4 cut(s)	551, 600, 764, 880
NsiI	ATGCAT	2 cut(s)	1201, 1249
NspI	RCATGY	6 cut(s)	539, 893, 1073, 1138, 1199, 1589
OliI	CACNNNNGTG	1 cut(s)	1109
PciI	ACATGT	3 cut(s)	1069, 1134, 1585
PcsI	WCGNNNNNNNCGW	1 cut(s)	441
PctI	GAATGC	2 cut(s)	150, 282
PdiI	GCCGGC	1 cut(s)	514
PfeI	GAWTC	1 cut(s)	1361
PflMI	CCANNNNNTGG	1 cut(s)	1240
PleI	GAGTC	3 cut(s)	20, 540, 1024
PpsI	GAGTC	3 cut(s)	20, 540, 1024
PpuMI	RGGWCCY	1 cut(s)	820
PscI	ACATGT	3 cut(s)	1069, 1134, 1585
PshAI	GACNNNNGTC	1 cut(s)	438
PshBI	ATTAAT	1 cut(s)	1407
Psp5II	RGGWCCY	1 cut(s)	820
Psp6I	CCWGG	3 cut(s)	500, 581, 1632
PspFI	CCCAGC	1 cut(s)	190
PspGI	CCWGG	3 cut(s)	500, 581, 1632
PspN4I	GGNNCC	3 cut(s)	822, 1425, 1630
PspPI	GGNCC	7 cut(s)	4, 504, 820, 952, 1300, 1474, 1614
PspPPI	RGGWCCY	1 cut(s)	820
PstNI	CAGNNNCTG	2 cut(s)	71, 1240
PsuI	RGATCY	3 cut(s)	458, 652, 1345
PvuII	CAGCTG	4 cut(s)	18, 194, 410, 620
RsaI	GTAC	1 cut(s)	806
RsaNI	GTAC	1 cut(s)	805
RseI	CAYNNNNRTG	1 cut(s)	1109
SacII	CCGCGG	1 cut(s)	10
SaqAI	TTAA	6 cut(s)	540, 785, 989, 1407, 1437, 1548
Sau3AI	GATC	4 cut(s)	349, 458, 652, 1345
Sau96I	GGNCC	7 cut(s)	4, 504, 820, 952, 1300, 1474, 1614
SchI	GAGTC	3 cut(s)	21, 540, 1025
ScrFI	CCNGG	3 cut(s)	502, 583, 1634
SduI	GDGCHC	2 cut(s)	244, 1633
SfaNI	GCATC	7 cut(s)	157, 672, 785, 1054, 1177, 1234, 1571
SfcI	CTRYAG	1 cut(s)	1167
Sfr303I	CCGCGG	1 cut(s)	10
SgrAI	CRCCGGYG	1 cut(s)	512
SgrBI	CCGCGG	1 cut(s)	10
SinI	GGWCC	4 cut(s)	820, 952, 1300, 1474
SmiMI	CAYNNNNRTG	1 cut(s)	1109
SmlI	CTYRAG	4 cut(s)	656, 847, 1547, 1641
SmoI	CTYRAG	4 cut(s)	656, 847, 1547, 1641
SsiI	CCGC	6 cut(s)	7, 9, 527, 961, 1504, 1617
SspI	AATATT	2 cut(s)	940, 1579
SspMI	CTAG	4 cut(s)	114, 360, 707, 1559
StyD4I	CCNGG	3 cut(s)	500, 581, 1632
StyI	CCWWGG	2 cut(s)	1086, 1427
TaaI	ACNGT	6 cut(s)	222, 332, 673, 1295, 1466, 1600
TaiI	ACGT	1 cut(s)	721
TaqI	TCGA	4 cut(s)	119, 352, 591, 1155
TatI	WGTACW	1 cut(s)	804
TauI	GCSGC	2 cut(s)	9, 964
TfiI	GAWTC	1 cut(s)	1361
Tru1I	TTAA	6 cut(s)	540, 785, 989, 1407, 1437, 1548
Tru9I	TTAA	6 cut(s)	540, 785, 989, 1407, 1437, 1548
TscAI	CASTG	4 cut(s)	676, 889, 1148, 1603
TseFI	GTSAC	4 cut(s)	551, 600, 764, 880
TseI	GCWGC	8 cut(s)	194, 377, 380, 407, 410, 773, 1265, 1637
Tsp45I	GTSAC	4 cut(s)	551, 600, 764, 880
TspGWI	ACGGA	1 cut(s)	362
TspRI	CASTG	4 cut(s)	676, 889, 1148, 1603
Van91I	CCANNNNNTGG	1 cut(s)	1240
Vha464I	CTTAAG	1 cut(s)	1547
VpaK11BI	GGWCC	4 cut(s)	820, 952, 1300, 1474
VspI	ATTAAT	1 cut(s)	1407
XagI	CCTNNNNNAGG	2 cut(s)	144, 815
XapI	RAATTY	5 cut(s)	694, 859, 1115, 1270, 1371
XbaI	TCTAGA	1 cut(s)	706
XceI	RCATGY	6 cut(s)	539, 893, 1073, 1138, 1199, 1589
XspI	CTAG	4 cut(s)	114, 360, 707, 1559
Zsp2I	ATGCAT	2 cut(s)	1201, 1249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.