component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G02200 AT3G02200 AT5G15610 AT5G15610 |
| fragaria_vesca | FvH4_6g46660 FvH4_6g46660 |
| malus_domestica | MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1 |
| prunus_persica | Prupe.3G252000_v2.0.a1 |
| pyrus_communis | pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360 |
| rosa_chinensis | RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551 |
| rosa_laevigata | RLG00000021531 RLG00000021538 RLG00000037000 |
| rosa_multiflora | Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002 |
| rosa_roxburghii | Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200 |
| rosa_rugosa | Rorug02G0515200 Rorug05G0483100 |
| rosa_samantha | Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700 |
| rosa_wichuraiana | Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 1 cut(s) | 106 |
| AccBSI | CCGCTC | 1 cut(s) | 335 |
| AciI | CCGC | 1 cut(s) | 333 |
| AclWI | GGATC | 1 cut(s) | 219 |
| AcsI | RAATTY | 2 cut(s) | 136, 237 |
| AcuI | CTGAAG | 1 cut(s) | 251 |
| AfaI | GTAC | 1 cut(s) | 116 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 106 |
| AflII | CTTAAG | 1 cut(s) | 376 |
| AgsI | TTSAA | 1 cut(s) | 85 |
| AluBI | AGCT | 3 cut(s) | 79, 156, 387 |
| AluI | AGCT | 3 cut(s) | 79, 156, 387 |
| Alw26I | GTCTC | 1 cut(s) | 254 |
| AlwI | GGATC | 1 cut(s) | 219 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 106 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| ApoI | RAATTY | 2 cut(s) | 136, 237 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 145, 177 |
| AseI | ATTAAT | 1 cut(s) | 273 |
| AspLEI | GCGC | 1 cut(s) | 40 |
| AspS9I | GGNCC | 1 cut(s) | 166 |
| AvaII | GGWCC | 1 cut(s) | 166 |
| BanII | GRGCYC | 1 cut(s) | 221 |
| BbvI | GCAGC | 1 cut(s) | 143 |
| BcoDI | GTCTC | 1 cut(s) | 254 |
| BfaI | CTAG | 2 cut(s) | 20, 388 |
| BfmI | CTRYAG | 1 cut(s) | 33 |
| BfrI | CTTAAG | 1 cut(s) | 376 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| Bme18I | GGWCC | 1 cut(s) | 166 |
| BmgT120I | GGNCC | 1 cut(s) | 166 |
| BmiI | GGNNCC | 1 cut(s) | 291 |
| BmsI | GCATC | 2 cut(s) | 43, 100 |
| BsaJI | CCNNGG | 1 cut(s) | 293 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 106 |
| Bse3DI | GCAATG | 1 cut(s) | 370 |
| BseDI | CCNNGG | 1 cut(s) | 293 |
| BseGI | GGATG | 3 cut(s) | 58, 115, 286 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BseMI | GCAATG | 1 cut(s) | 370 |
| BseMII | CTCAG | 1 cut(s) | 355 |
| BseXI | GCAGC | 1 cut(s) | 143 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 106 |
| BsmAI | GTCTC | 1 cut(s) | 254 |
| Bsp1286I | GDGCHC | 1 cut(s) | 221 |
| Bsp143I | GATC | 1 cut(s) | 211 |
| BspACI | CCGC | 1 cut(s) | 333 |
| BspCNI | CTCAG | 1 cut(s) | 354 |
| BspLI | GGNNCC | 1 cut(s) | 291 |
| BspPI | GGATC | 1 cut(s) | 219 |
| BspTI | CTTAAG | 1 cut(s) | 376 |
| BsrBI | CCGCTC | 1 cut(s) | 335 |
| BsrDI | GCAATG | 1 cut(s) | 370 |
| BssECI | CCNNGG | 1 cut(s) | 293 |
| BssMI | GATC | 1 cut(s) | 211 |
| BssT1I | CCWWGG | 1 cut(s) | 293 |
| BstAFI | CTTAAG | 1 cut(s) | 376 |
| BstC8I | GCNNGC | 1 cut(s) | 30 |
| BstDEI | CTNAG | 2 cut(s) | 186, 341 |
| BstF5I | GGATG | 3 cut(s) | 58, 115, 286 |
| BstHHI | GCGC | 1 cut(s) | 40 |
| BstKTI | GATC | 1 cut(s) | 214 |
| BstMAI | GTCTC | 1 cut(s) | 254 |
| BstMBI | GATC | 1 cut(s) | 211 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 25, 62, 314 |
| BstNSI | RCATGY | 1 cut(s) | 65 |
| BstSFI | CTRYAG | 1 cut(s) | 33 |
| BstV1I | GCAGC | 1 cut(s) | 143 |
| BstX2I | RGATCY | 1 cut(s) | 211 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 325 |
| BstYI | RGATCY | 1 cut(s) | 211 |
| BtsCI | GGATG | 3 cut(s) | 58, 115, 286 |
| BtsIMutI | CAGTG | 1 cut(s) | 14 |
| Cac8I | GCNNGC | 1 cut(s) | 30 |
| CaiI | CAGNNNCTG | 1 cut(s) | 106 |
| CfoI | GCGC | 1 cut(s) | 40 |
| Cfr13I | GGNCC | 1 cut(s) | 166 |
| Csp6I | GTAC | 1 cut(s) | 115 |
| CviAII | CATG | 2 cut(s) | 62, 170 |
| CviJI | RGCY | 7 cut(s) | 79, 106, 156, 219, 308, 317, 387 |
| CviKI_1 | RGCY | 7 cut(s) | 79, 106, 156, 219, 308, 317, 387 |
| CviQI | GTAC | 1 cut(s) | 115 |
| DdeI | CTNAG | 2 cut(s) | 186, 341 |
| DpnI | GATC | 1 cut(s) | 213 |
| DpnII | GATC | 1 cut(s) | 211 |
| Eco130I | CCWWGG | 1 cut(s) | 293 |
| Eco24I | GRGCYC | 1 cut(s) | 221 |
| Eco47I | GGWCC | 1 cut(s) | 166 |
| Eco57I | CTGAAG | 1 cut(s) | 251 |
| EcoRI | GAATTC | 1 cut(s) | 237 |
| EcoT14I | CCWWGG | 1 cut(s) | 293 |
| EcoT22I | ATGCAT | 1 cut(s) | 67 |
| EcoT38I | GRGCYC | 1 cut(s) | 221 |
| ErhI | CCWWGG | 1 cut(s) | 293 |
| FaeI | CATG | 2 cut(s) | 65, 173 |
| FaiI | YATR | 6 cut(s) | 63, 73, 159, 171, 311, 371 |
| FatI | CATG | 2 cut(s) | 61, 169 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| FokI | GGATG | 3 cut(s) | 65, 122, 293 |
| FriOI | GRGCYC | 1 cut(s) | 221 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 2 cut(s) | 20, 388 |
| GlaI | GCGC | 1 cut(s) | 39 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HhaI | GCGC | 1 cut(s) | 40 |
| Hin1II | CATG | 2 cut(s) | 65, 173 |
| Hin6I | GCGC | 1 cut(s) | 38 |
| HinP1I | GCGC | 1 cut(s) | 38 |
| HinfI | GANTC | 2 cut(s) | 227, 329 |
| Hpy188I | TCNGA | 3 cut(s) | 223, 257, 270 |
| Hpy188III | TCNNGA | 1 cut(s) | 231 |
| HpyAV | CCTTC | 1 cut(s) | 43 |
| HpyCH4V | TGCA | 1 cut(s) | 65 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 25, 62, 314 |
| HpyF3I | CTNAG | 2 cut(s) | 186, 341 |
| Hsp92II | CATG | 2 cut(s) | 65, 173 |
| HspAI | GCGC | 1 cut(s) | 38 |
| Kzo9I | GATC | 1 cut(s) | 211 |
| LmnI | GCTCC | 1 cut(s) | 360 |
| LpnPI | CCDG | 7 cut(s) | 42, 92, 113, 113, 149, 200, 216 |
| Lsp1109I | GCAGC | 1 cut(s) | 143 |
| LweI | GCATC | 2 cut(s) | 43, 100 |
| MaeI | CTAG | 2 cut(s) | 20, 388 |
| MalI | GATC | 1 cut(s) | 213 |
| MbiI | CCGCTC | 1 cut(s) | 335 |
| MboI | GATC | 1 cut(s) | 211 |
| MboII | GAAGA | 2 cut(s) | 97, 185 |
| MflI | RGATCY | 1 cut(s) | 211 |
| MhlI | GDGCHC | 1 cut(s) | 221 |
| MluCI | AATT | 2 cut(s) | 136, 237 |
| MlyI | GAGTC | 1 cut(s) | 323 |
| MmeI | TCCRAC | 1 cut(s) | 24 |
| MnlI | CCTC | 2 cut(s) | 96, 271 |
| Mph1103I | ATGCAT | 1 cut(s) | 67 |
| MseI | TTAA | 3 cut(s) | 273, 303, 377 |
| MspCI | CTTAAG | 1 cut(s) | 376 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 25, 62, 314 |
| NdeII | GATC | 1 cut(s) | 211 |
| NlaIII | CATG | 2 cut(s) | 65, 173 |
| NlaIV | GGNNCC | 1 cut(s) | 291 |
| NsiI | ATGCAT | 1 cut(s) | 67 |
| NspI | RCATGY | 1 cut(s) | 65 |
| PfeI | GAWTC | 1 cut(s) | 227 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 106 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 323 |
| PpsI | GAGTC | 1 cut(s) | 323 |
| PshBI | ATTAAT | 1 cut(s) | 273 |
| PspN4I | GGNNCC | 1 cut(s) | 291 |
| PspPI | GGNCC | 1 cut(s) | 166 |
| PstNI | CAGNNNCTG | 1 cut(s) | 106 |
| PsuI | RGATCY | 1 cut(s) | 211 |
| RsaI | GTAC | 1 cut(s) | 116 |
| RsaNI | GTAC | 1 cut(s) | 115 |
| SaqAI | TTAA | 3 cut(s) | 273, 303, 377 |
| SatI | GCNGC | 1 cut(s) | 132 |
| Sau3AI | GATC | 1 cut(s) | 211 |
| Sau96I | GGNCC | 1 cut(s) | 166 |
| SchI | GAGTC | 1 cut(s) | 323 |
| SduI | GDGCHC | 1 cut(s) | 221 |
| SetI | ASST | 4 cut(s) | 81, 158, 295, 389 |
| SfaNI | GCATC | 2 cut(s) | 43, 100 |
| SfcI | CTRYAG | 1 cut(s) | 33 |
| SinI | GGWCC | 1 cut(s) | 166 |
| SmlI | CTYRAG | 1 cut(s) | 376 |
| SmoI | CTYRAG | 1 cut(s) | 376 |
| Sse9I | AATT | 2 cut(s) | 136, 237 |
| SsiI | CCGC | 1 cut(s) | 333 |
| SspMI | CTAG | 2 cut(s) | 20, 388 |
| StyI | CCWWGG | 1 cut(s) | 293 |
| TasI | AATT | 2 cut(s) | 136, 237 |
| TfiI | GAWTC | 1 cut(s) | 227 |
| Tru1I | TTAA | 3 cut(s) | 273, 303, 377 |
| Tru9I | TTAA | 3 cut(s) | 273, 303, 377 |
| TscAI | CASTG | 1 cut(s) | 14 |
| TseI | GCWGC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 4 cut(s) | 186, 192, 240, 297 |
| TspRI | CASTG | 1 cut(s) | 14 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 106 |
| Vha464I | CTTAAG | 1 cut(s) | 376 |
| VpaK11BI | GGWCC | 1 cut(s) | 166 |
| VspI | ATTAAT | 1 cut(s) | 273 |
| XapI | RAATTY | 2 cut(s) | 136, 237 |
| XceI | RCATGY | 1 cut(s) | 65 |
| XspI | CTAG | 2 cut(s) | 20, 388 |
| Zsp2I | ATGCAT | 1 cut(s) | 67 |