Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

5042951 .. 5043724

Gene Structure 774 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1062000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 165 bp

ATGTTTCATTGTGACTTGCTAAATATGCCTGCTGTAGAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCATATCAGCTTATGAAGATCTTTCTGACTGAGAGGCTCGATGCTTACTTGGAGTTTCAAGCTGCAAATTCTGATTTACTGAAAAGCTACGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

55

Amino Acids

6.31

Weight (kDa)

4.85

Isoelectric Point (pI)

33.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	136
AgsI	TTSAA	1 cut(s)	128
AluBI	AGCT	3 cut(s)	79, 131, 156
AluI	AGCT	3 cut(s)	79, 131, 156
ApeKI	GCWGC	1 cut(s)	131
ApoI	RAATTY	1 cut(s)	136
BbvI	GCAGC	1 cut(s)	118
BfmI	CTRYAG	1 cut(s)	33
BglII	AGATCT	1 cut(s)	87
BisI	GCNGC	1 cut(s)	132
BlpI	GCTNAGC	1 cut(s)	57
BlsI	GCNGC	1 cut(s)	133
BmsI	GCATC	2 cut(s)	43, 100
BpmI	CTGGAG	1 cut(s)	65
Bpu1102I	GCTNAGC	1 cut(s)	57
Bse1I	ACTGG	1 cut(s)	48
BseGI	GGATG	1 cut(s)	58
BseMII	CTCAG	1 cut(s)	90
BseNI	ACTGG	1 cut(s)	48
BseXI	GCAGC	1 cut(s)	118
Bsp143I	GATC	1 cut(s)	87
Bsp1720I	GCTNAGC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	48
BssMI	GATC	1 cut(s)	87
BstC8I	GCNNGC	2 cut(s)	30, 63
BstDEI	CTNAG	2 cut(s)	57, 99
BstF5I	GGATG	1 cut(s)	58
BstKTI	GATC	1 cut(s)	90
BstMBI	GATC	1 cut(s)	87
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 62
BstNSI	RCATGY	1 cut(s)	65
BstSFI	CTRYAG	1 cut(s)	33
BstV1I	GCAGC	1 cut(s)	118
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	58
Cac8I	GCNNGC	2 cut(s)	30, 63
CviAII	CATG	1 cut(s)	62
CviJI	RGCY	4 cut(s)	79, 106, 131, 156
CviKI_1	RGCY	4 cut(s)	79, 106, 131, 156
DdeI	CTNAG	2 cut(s)	57, 99
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EcoT22I	ATGCAT	1 cut(s)	67
FaeI	CATG	1 cut(s)	65
FaiI	YATR	4 cut(s)	26, 63, 73, 83
FatI	CATG	1 cut(s)	61
Fnu4HI	GCNGC	1 cut(s)	132
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	132
FspEI	CC	6 cut(s)	29, 35, 42, 53, 88, 104
GluI	GCNGC	1 cut(s)	132
GsuI	CTGGAG	1 cut(s)	65
Hin1II	CATG	1 cut(s)	65
Hpy188I	TCNGA	2 cut(s)	96, 142
HpyAV	CCTTC	1 cut(s)	43
HpyCH4V	TGCA	2 cut(s)	65, 134
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 62
HpyF3I	CTNAG	2 cut(s)	57, 99
Hsp92II	CATG	1 cut(s)	65
Kzo9I	GATC	1 cut(s)	87
LpnPI	CCDG	2 cut(s)	29, 42
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	2 cut(s)	43, 100
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	1 cut(s)	97
MflI	RGATCY	1 cut(s)	87
MluCI	AATT	1 cut(s)	136
MnlI	CCTC	1 cut(s)	96
Mph1103I	ATGCAT	1 cut(s)	67
MseI	TTAA	1 cut(s)	163
MwoI	GCNNNNNNNGC	2 cut(s)	25, 62
NdeII	GATC	1 cut(s)	87
NlaIII	CATG	1 cut(s)	65
NmuCI	GTSAC	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	67
NspI	RCATGY	1 cut(s)	65
PaeI	GCATGC	1 cut(s)	65
PkrI	GCNGC	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	87
SaqAI	TTAA	1 cut(s)	163
SatI	GCNGC	1 cut(s)	132
Sau3AI	GATC	1 cut(s)	87
SetI	ASST	3 cut(s)	81, 133, 158
SfaNI	GCATC	2 cut(s)	43, 100
SfcI	CTRYAG	1 cut(s)	33
SgeI	CNNG	7 cut(s)	28, 41, 56, 74, 119, 130, 140
SphI	GCATGC	1 cut(s)	65
Sse9I	AATT	1 cut(s)	136
TaqI	TCGA	1 cut(s)	108
TasI	AATT	1 cut(s)	136
Tru1I	TTAA	1 cut(s)	163
Tru9I	TTAA	1 cut(s)	163
TseFI	GTSAC	1 cut(s)	11
TseI	GCWGC	1 cut(s)	131
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	1 cut(s)	98
XapI	RAATTY	1 cut(s)	136
XceI	RCATGY	1 cut(s)	65
Zsp2I	ATGCAT	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.