MD17G1061800.v1.1

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Forward (+)
4996017 .. 5021838
25822 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1061800.v1.1.491

Sequence Viewer

Length: 1269 bp
ATGACGACTGTGGTGCCAACCTCCGAGGAAGATCCCGCTCTCGCCGTCGTCCGATTCACCTCCGAGCTCGCCTGGGCCGACGCCGGCCACGAGGTTGCTGAGCCGCAAGTTACTAGACTATGTGCTGAAGCCCAAGAATGCGTGGTAATGGACAGGTGGTTCGATTTGGTGTCCCTTATGCTTACTTCGGCTGAGGTCATATTGTCAAAGGTCTCAGAAAAAGATCTTGAGTGCATATTCACTGTTATCTGCAATGTTGTTACAAAGTCTGAAAGTCCAGATGAAGCACTGGAGATGGCAAAACTTATATCCTCAAAGATTACTCAAAAACCAACCGACAAGCCTGCGTTGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCTCTTAATTTGGCTATCAATGGGAGGGTCACTGAACATGTCATCCCTTCATTCAAAAATGTGGAAAGTTTTTTGAAAGAGTGGAATATTGGGATCTCTGATCAGAGGCAGTTATTTTTGACCATCGCTAATGTTCTGAAAGAACACAAAAACATGACAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACATTTTCTGGTGAAGATGTGCATACGTTGAGTGAAGCCAAAGAGGAAGCTATACGTACAATTGTGGAATTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATATGCCTGCTGTAGAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCATATCAGCTTTTGAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGTAAATTCTGATTTACTGAAATGCTACGGCCTTGTCCATGAAGACTGCATAACTAAGATGAGGTTGATTTCCTTGATGGATCTTGGTTCTGATGAATCTGGACGGATTCCTTACGGTGCTATCAGAGATACGCTTCAGATTAATGATGACGAGGTTGAACTTTGGGTGGTAAGGGCAATAACTGCCAAGTTGATGGACTGTAAAATCGACCAGATGAATCAAGTGTTGATGGACTGTAAAATGGACCAGATGAATCAAGTGGTGATTGTGCGCCGCTGTACTGAGAGAGTATTTGGGGAAGAACAATGGCTTACACTAAGAACAAAGTTAGCAACTTGGAGGGGTAATATTGCAAATGTTATCAGCACCATTCGAGCTAACAGGATAGCTGACGATGGATCACAGGCAGTGCAAGGCTTAGTTATTCGTTAG

Protein Analysis

423

Amino Acids

47.94

Weight (kDa)

5.14

Isoelectric Point (pI)

30.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PCI PF01399 282 - 355 4.1e-11 PCI domain
eIF3m_C_helix PF18005 375 - 403 9.7e-13 eIF3 subunit M, C-terminal helix
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 586
AccB1I GGYRCC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 414
AciI CCGC 3 cut(s) 36, 104, 1111
AclWI GGATC 4 cut(s) 26, 524, 924, 1243
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 3 cut(s) 596, 686, 841
AcuI CTGAAG 2 cut(s) 147, 956
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 4 cut(s) 377, 611, 676, 1117
AflIII ACRYGT 2 cut(s) 460, 705
AgsI TTSAA 6 cut(s) 370, 478, 499, 595, 790, 995
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 4 cut(s) 143, 175, 450, 482
AluBI AGCT 5 cut(s) 67, 668, 784, 1214, 1226
AluI AGCT 5 cut(s) 67, 668, 784, 1214, 1226
Alw21I GWGCWC 2 cut(s) 69, 427
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 4 cut(s) 26, 524, 924, 1243
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 4 cut(s) 75, 85, 696, 865
ApoI RAATTY 3 cut(s) 596, 686, 841
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AseI ATTAAT 1 cut(s) 978
AspLEI GCGC 2 cut(s) 354, 1110
AspS9I GGNCC 3 cut(s) 75, 697, 1081
AsuHPI GGTGA 3 cut(s) 49, 641, 1111
AvaII GGWCC 1 cut(s) 1081
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 69, 427
BbvCI CCTCAGC 1 cut(s) 192
BccI CCATC 6 cut(s) 289, 554, 907, 1024, 1060, 1226
BceAI ACGGC 2 cut(s) 29, 880
BcgI CGANNNNNNTGC 3 cut(s) 29, 326, 360
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 738
BglII AGATCT 2 cut(s) 223, 792
BisI GCNGC 2 cut(s) 104, 1111
BlpI GCTNAGC 2 cut(s) 99, 762
BlsI GCNGC 2 cut(s) 105, 1112
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 1081
BmgT120I GGNCC 3 cut(s) 75, 697, 1081
BmiI GGNNCC 2 cut(s) 15, 699
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 748, 805
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 3 cut(s) 311, 407, 770
Bpu10I CCTNAGC 1 cut(s) 192
Bpu1102I GCTNAGC 2 cut(s) 99, 762
BpuEI CTTGAG 2 cut(s) 248, 439
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 2 cut(s) 24, 72
Bse118I RCCGGY 2 cut(s) 83, 402
Bse1I ACTGG 3 cut(s) 294, 390, 753
Bse3DI GCAATG 1 cut(s) 259
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 2 cut(s) 24, 72
BseGI GGATG 3 cut(s) 465, 763, 820
BseMI GCAATG 1 cut(s) 259
BseMII CTCAG 5 cut(s) 90, 183, 228, 818, 1110
BseNI ACTGG 3 cut(s) 294, 390, 753
BshFI GGCC 4 cut(s) 77, 87, 698, 867
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 69, 427
BsiSI CCGG 2 cut(s) 84, 403
BslFI GGGAC 1 cut(s) 157
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 157
BsmI GAATGC 1 cut(s) 143
BsnI GGCC 4 cut(s) 77, 87, 698, 867
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 69, 427
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
Bsp1720I GCTNAGC 2 cut(s) 99, 762
BspACI CCGC 3 cut(s) 36, 104, 1111
BspANI GGCC 4 cut(s) 77, 87, 698, 867
BspCNI CTCAG 5 cut(s) 91, 184, 227, 817, 1111
BspLI GGNNCC 2 cut(s) 15, 699
BspPI GGATC 4 cut(s) 26, 524, 924, 1243
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 1 cut(s) 259
BsrFI RCCGGY 2 cut(s) 83, 402
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 3 cut(s) 294, 390, 753
BssAI RCCGGY 2 cut(s) 83, 402
BssECI CCNNGG 2 cut(s) 24, 72
BssMI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 89
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 5 cut(s) 10, 244, 953, 1037, 1073
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
BstF5I GGATG 3 cut(s) 465, 763, 820
BstHHI GCGC 2 cut(s) 354, 1110
BstKTI GATC 7 cut(s) 34, 226, 519, 526, 795, 919, 1238
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
BstMWI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 3 cut(s) 464, 709, 770
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 738
BstSNI TACGTA 1 cut(s) 674
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 5 cut(s) 31, 223, 516, 792, 916
BstXI CCANNNNNNTGG 2 cut(s) 613, 1030
BstYI RGATCY 5 cut(s) 31, 223, 516, 792, 916
BsuRI GGCC 4 cut(s) 77, 87, 698, 867
BtgZI GCGATG 1 cut(s) 532
BtsCI GGATG 3 cut(s) 465, 763, 820
BtsI GCAGTG 1 cut(s) 1251
BtsIMutI CAGTG 5 cut(s) 240, 287, 453, 719, 1251
Cac8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
CaiI CAGNNNCTG 1 cut(s) 811
CfoI GCGC 2 cut(s) 354, 1110
Cfr10I RCCGGY 2 cut(s) 83, 402
Cfr13I GGNCC 3 cut(s) 75, 697, 1081
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 376, 610, 675, 1116
CviAII CATG 5 cut(s) 461, 577, 706, 767, 875
CviQI GTAC 4 cut(s) 376, 610, 675, 1116
DpnI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1237
DpnII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
DrdI GACNNNNNNGTC 1 cut(s) 586
DseDI GACNNNNNNGTC 1 cut(s) 586
EaeI YGGCCR 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 67
Eco105I TACGTA 1 cut(s) 674
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 1081
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 147, 956
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 71
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 69
FaeI CATG 5 cut(s) 464, 580, 709, 770, 878
FaqI GGGAC 1 cut(s) 157
FatI CATG 5 cut(s) 460, 576, 705, 766, 874
FauI CCCGC 1 cut(s) 43
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 2 cut(s) 104, 1111
FokI GGATG 3 cut(s) 452, 770, 827
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 2 cut(s) 104, 1111
FspBI CTAG 1 cut(s) 114
GlaI GCGC 2 cut(s) 353, 1109
GluI GCNGC 2 cut(s) 104, 1111
GsuI CTGGAG 3 cut(s) 311, 407, 770
HaeIII GGCC 4 cut(s) 77, 87, 698, 867
HapII CCGG 2 cut(s) 84, 403
HgaI GACGC 1 cut(s) 89
HhaI GCGC 2 cut(s) 354, 1110
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 5 cut(s) 464, 580, 709, 770, 878
Hin6I GCGC 2 cut(s) 352, 1108
HinP1I GCGC 2 cut(s) 352, 1108
HinfI GANTC 7 cut(s) 54, 587, 802, 932, 943, 1054, 1090
HpaII CCGG 2 cut(s) 84, 403
HphI GGTGA 3 cut(s) 49, 641, 1111
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 227, 278, 601, 936
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 2 cut(s) 50, 83
HpyAV CCTTC 3 cut(s) 480, 688, 748
HpyCH4III ACNGT 5 cut(s) 10, 244, 953, 1037, 1073
HpyCH4IV ACGT 2 cut(s) 644, 673
HpyCH4V TGCA 7 cut(s) 234, 252, 640, 770, 885, 1190, 1249
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
HpySE526I ACGT 2 cut(s) 644, 673
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 464, 580, 709, 770, 878
HspAI GCGC 2 cut(s) 352, 1108
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
LweI GCATC 2 cut(s) 748, 805
MaeI CTAG 1 cut(s) 114
MaeII ACGT 2 cut(s) 644, 673
MaeIII GTNAC 3 cut(s) 109, 259, 451
MalI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1237
MbiI CCGCTC 1 cut(s) 38
MboI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
MboII GAAGA 5 cut(s) 41, 644, 802, 890, 1148
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 5 cut(s) 31, 223, 516, 792, 916
MhlI GDGCHC 2 cut(s) 69, 427
MluCI AATT 5 cut(s) 430, 596, 678, 686, 841
MlyI GAGTC 2 cut(s) 596, 796
Mph1103I ATGCAT 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 83
MseI TTAA 3 cut(s) 356, 429, 978
MspA1I CMGCKG 1 cut(s) 1113
MspI CCGG 2 cut(s) 84, 403
MspR9I CCNGG 1 cut(s) 73
MunI CAATTG 1 cut(s) 678
Mva1269I GAATGC 1 cut(s) 143
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
NaeI GCCGGC 1 cut(s) 85
NdeII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 5 cut(s) 464, 580, 709, 770, 878
NlaIV GGNNCC 2 cut(s) 15, 699
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 3 cut(s) 464, 709, 770
PaeI GCATGC 1 cut(s) 770
PciI ACATGT 2 cut(s) 460, 705
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 87
PctI GAATGC 1 cut(s) 143
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 5 cut(s) 54, 932, 943, 1054, 1090
PkrI GCNGC 2 cut(s) 105, 1112
PleI GAGTC 2 cut(s) 595, 796
PpsI GAGTC 2 cut(s) 595, 796
Ppu21I YACGTR 1 cut(s) 674
PscI ACATGT 2 cut(s) 460, 705
PshBI ATTAAT 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 15, 699
PspPI GGNCC 3 cut(s) 75, 697, 1081
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 5 cut(s) 31, 223, 516, 792, 916
RsaI GTAC 4 cut(s) 377, 611, 676, 1117
RsaNI GTAC 4 cut(s) 376, 610, 675, 1116
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 356, 429, 978
SatI GCNGC 2 cut(s) 104, 1111
Sau3AI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1235
Sau96I GGNCC 3 cut(s) 75, 697, 1081
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 2 cut(s) 596, 796
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 69, 427
SfaNI GCATC 2 cut(s) 748, 805
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 1081
SmlI CTYRAG 2 cut(s) 227, 418
SmoI CTYRAG 2 cut(s) 227, 418
SnaBI TACGTA 1 cut(s) 674
SphI GCATGC 1 cut(s) 770
Sse9I AATT 5 cut(s) 430, 596, 678, 686, 841
SsiI CCGC 3 cut(s) 36, 104, 1111
SspI AATATT 2 cut(s) 511, 1186
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 5 cut(s) 10, 244, 953, 1037, 1073
TaiI ACGT 2 cut(s) 647, 676
TaqI TCGA 3 cut(s) 162, 1044, 1210
TasI AATT 5 cut(s) 430, 596, 678, 686, 841
TatI WGTACW 3 cut(s) 375, 609, 1115
TauI GCSGC 2 cut(s) 106, 1113
TfiI GAWTC 5 cut(s) 54, 932, 943, 1054, 1090
Tru1I TTAA 3 cut(s) 356, 429, 978
Tru9I TTAA 3 cut(s) 356, 429, 978
TscAI CASTG 5 cut(s) 247, 294, 460, 719, 1251
TseFI GTSAC 1 cut(s) 451
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 6 cut(s) 297, 462, 891, 945, 1067, 1103
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 5 cut(s) 247, 294, 460, 719, 1251
VpaK11BI GGWCC 1 cut(s) 1081
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 3 cut(s) 596, 686, 841
XceI RCATGY 3 cut(s) 464, 709, 770
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.