Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

24177283 .. 24180876

Gene Structure 3594 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G252000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGACGACTATTTTGCCAACCTCGGAGGAAGATCCTGCTCTCTCCGTTGTCCGATTCACCTCAGAGCTCTCCTGGGCCGACGCTGGCCCTGAGGTTGCTGAGCCACAAGTCAGTAGATTATGCACGGAAGCCCAAGAATGCATGGTGATGGCCAGGTGGTTCGATTTGGTGTCACTTATGCTAACTTCAGCTGATGTCATATTATCAAAGGTCTCTGAGAAAGATCTTGAGTGCATATTCACTGTTATCTGCAATGTTGTTACAAAGTCTGAAAGTCCAGATGAAGCTCTTGAGATGGCAAAACTTATATCCGCAAAGATTACTCAGCAACCAAGTGACAAGCCTGCTTTGCGCTTAAAGATCTTGTTCAATCTGTACAACCTACTGGAGAATCCATATAGCCGGTTCTTTGTCTACTTGAGTGCTCTAAATTTGGCAATCAATGGAAAGGTCACTGAACATGTCATCCCTTCATTCAAAAAGATAGAAAGTTTCTTGAAAGAGTGGAATATTGGGGTCTCGGACCAGAGGCAACTATTTCTTACCATCTCAAATGTTTTAAGAGAACACAAAAGCTTGGCAAAGGAGTCTTTCAAATTCCTGAGCAAGTACTTAGCTACTTTTTCTGGTGAAGATGCATATATATTGAGTGAAGCCAAGGAGGAAGCTGTGCGCACAATTGTGGAATTTGTGAAGGCCCCTGACTTGTTTCAGTGTGATTTGCTAGATATGCCTGCTGTAGGACAATTGGAGAAGGATGCTAAGCATGCGTTGGCATATCAGCTTTTAAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGACTGCCAATTCTACTTTACTGAAAGGCTACGGGCTTGTCCATGAAGACTGCATAACAAAGATGAGGTTGATTTCTTTGGTGGATCTTGGCTCTGATGAATCTGGACGAATTCCTTACAGTCTTATCAGAGATACACTTCAGATTAATGATGATGTCGTCGAACTTTGGGTGGTCAAAGCGATAACTGCTAAGTTAATGGACTGTAAAATGGACCAGATGAATCAAGTGGTGATTGTGAGCCGCTGTACTGAGAGAGTATTTGGGCAGCAACAATGGCTTACACTTAGATCAAAGTTAGCAACTTGGAGGGGTAATGTTGCAAATGTTATCAGCACAATTCGAGCCAACAGGATTGCTGAAGATGGCTCGCAGGCAGTGCAGGGCTTAGTTATTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

411

Amino Acids

46.22

Weight (kDa)

5.32

Isoelectric Point (pI)

37.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	674
AccI	GTMKAC	1 cut(s)	414
AciI	CCGC	2 cut(s)	312, 1075
AclWI	GGATC	2 cut(s)	26, 924
AcoI	YGGCCR	1 cut(s)	150
AcsI	RAATTY	4 cut(s)	430, 596, 686, 942
AcuI	CTGAAG	3 cut(s)	171, 956, 1212
AfaI	GTAC	3 cut(s)	377, 611, 1081
AfiI	CCNNNNNNNGG	1 cut(s)	740
AflIII	ACRYGT	1 cut(s)	460
AgsI	TTSAA	4 cut(s)	370, 478, 499, 595
AjnI	CCWGG	2 cut(s)	71, 152
AleI	CACNNNNGTG	1 cut(s)	680
AloI	GAACNNNNNNTCC	2 cut(s)	450, 482
AluBI	AGCT	7 cut(s)	67, 191, 287, 576, 617, 668, 784
AluI	AGCT	7 cut(s)	67, 191, 287, 576, 617, 668, 784
Alw21I	GWGCWC	2 cut(s)	69, 427
Alw26I	GTCTC	2 cut(s)	217, 523
AlwI	GGATC	2 cut(s)	26, 924
AlwNI	CAGNNNCTG	1 cut(s)	811
AoxI	GGCC	4 cut(s)	75, 85, 150, 696
ApeKI	GCWGC	1 cut(s)	1099
ApoI	RAATTY	4 cut(s)	430, 596, 686, 942
ArsI	GACNNNNNNTTYG	1 cut(s)	27
AseI	ATTAAT	1 cut(s)	978
AspLEI	GCGC	2 cut(s)	354, 675
AspS9I	GGNCC	5 cut(s)	75, 86, 523, 697, 1045
AsuHPI	GGTGA	4 cut(s)	49, 157, 641, 1075
AvaII	GGWCC	2 cut(s)	523, 1045
AxyI	CCTNAGG	1 cut(s)	90
BalI	TGGCCA	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	69
BbsI	GAAGAC	1 cut(s)	885
Bbv12I	GWGCWC	2 cut(s)	69, 427
BbvI	GCAGC	1 cut(s)	1111
BccI	CCATC	4 cut(s)	142, 289, 554, 1190
BcgI	CGANNNNNNTGC	1 cut(s)	29
BciT130I	CCWGG	2 cut(s)	73, 154
BcoDI	GTCTC	2 cut(s)	217, 523
BfaI	CTAG	1 cut(s)	725
BfmI	CTRYAG	1 cut(s)	738
BglII	AGATCT	3 cut(s)	223, 360, 792
BisI	GCNGC	2 cut(s)	1075, 1100
BlpI	GCTNAGC	2 cut(s)	99, 762
BlsI	GCNGC	2 cut(s)	1076, 1101
BmcAI	AGTACT	1 cut(s)	611
Bme1390I	CCNGG	2 cut(s)	73, 154
Bme18I	GGWCC	2 cut(s)	523, 1045
BmgT120I	GGNCC	5 cut(s)	75, 86, 523, 697, 1045
BmiI	GGNNCC	1 cut(s)	699
BmrFI	CCNGG	2 cut(s)	73, 154
BmsI	GCATC	3 cut(s)	625, 748, 805
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	407
Bpu10I	CCTNAGC	1 cut(s)	602
Bpu1102I	GCTNAGC	2 cut(s)	99, 762
BpuEI	CTTGAG	3 cut(s)	248, 311, 439
BsaI	GGTCTC	2 cut(s)	217, 523
BsaJI	CCNNGG	3 cut(s)	21, 72, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	740
Bse118I	RCCGGY	1 cut(s)	402
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	90
Bse3DI	GCAATG	1 cut(s)	259
BseBI	CCWGG	2 cut(s)	73, 154
BseDI	CCNNGG	3 cut(s)	21, 72, 657
BseGI	GGATG	3 cut(s)	465, 763, 820
BseLI	CCNNNNNNNGG	1 cut(s)	740
BseMI	GCAATG	1 cut(s)	259
BseMII	CTCAG	8 cut(s)	75, 81, 90, 207, 338, 593, 818, 1074
BseNI	ACTGG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	1111
BsgI	GTGCAG	1 cut(s)	1232
BshFI	GGCC	4 cut(s)	77, 87, 152, 698
BsiHKAI	GWGCWC	2 cut(s)	69, 427
BsiSI	CCGG	1 cut(s)	403
BslI	CCNNNNNNNGG	1 cut(s)	740
BsmAI	GTCTC	2 cut(s)	217, 523
BsmI	GAATGC	1 cut(s)	143
BsnI	GGCC	4 cut(s)	77, 87, 152, 698
Bso31I	GGTCTC	2 cut(s)	217, 523
Bsp1286I	GDGCHC	2 cut(s)	69, 427
Bsp1407I	TGTACA	1 cut(s)	375
Bsp143I	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
Bsp1720I	GCTNAGC	2 cut(s)	99, 762
BspACI	CCGC	2 cut(s)	312, 1075
BspANI	GGCC	4 cut(s)	77, 87, 152, 698
BspCNI	CTCAG	8 cut(s)	74, 82, 91, 208, 337, 594, 817, 1075
BspLI	GGNNCC	1 cut(s)	699
BspPI	GGATC	2 cut(s)	26, 924
BspTNI	GGTCTC	2 cut(s)	217, 523
BsrDI	GCAATG	1 cut(s)	259
BsrFI	RCCGGY	1 cut(s)	402
BsrGI	TGTACA	1 cut(s)	375
BsrI	ACTGG	1 cut(s)	390
BssAI	RCCGGY	1 cut(s)	402
BssECI	CCNNGG	3 cut(s)	21, 72, 657
BssMI	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
BssT1I	CCWWGG	1 cut(s)	657
Bst2UI	CCWGG	2 cut(s)	73, 154
Bst4CI	ACNGT	3 cut(s)	244, 953, 1037
BstAPI	GCANNNNNTGC	1 cut(s)	1210
BstAUI	TGTACA	1 cut(s)	375
BstC8I	GCNNGC	6 cut(s)	85, 345, 735, 768, 1202, 1206
BstENI	CCTNNNNNAGG	1 cut(s)	738
BstF5I	GGATG	3 cut(s)	465, 763, 820
BstHHI	GCGC	2 cut(s)	354, 675
BstKTI	GATC	6 cut(s)	34, 226, 363, 795, 919, 1124
BstMAI	GTCTC	2 cut(s)	217, 523
BstMBI	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
BstMWI	GCNNNNNNNGC	6 cut(s)	349, 730, 767, 1019, 1108, 1210
BstNI	CCWGG	2 cut(s)	73, 154
BstNSI	RCATGY	2 cut(s)	464, 770
BstSCI	CCNGG	2 cut(s)	71, 152
BstSFI	CTRYAG	1 cut(s)	738
BstV1I	GCAGC	1 cut(s)	1111
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	5 cut(s)	31, 223, 360, 792, 916
BstYI	RGATCY	5 cut(s)	31, 223, 360, 792, 916
Bsu36I	CCTNAGG	1 cut(s)	90
BsuRI	GGCC	4 cut(s)	77, 87, 152, 698
BtsCI	GGATG	3 cut(s)	465, 763, 820
BtsI	GCAGTG	1 cut(s)	1215
BtsIMutI	CAGTG	4 cut(s)	240, 453, 719, 1215
Cac8I	GCNNGC	6 cut(s)	85, 345, 735, 768, 1202, 1206
CaiI	CAGNNNCTG	1 cut(s)	811
CfoI	GCGC	2 cut(s)	354, 675
Cfr10I	RCCGGY	1 cut(s)	402
Cfr13I	GGNCC	5 cut(s)	75, 86, 523, 697, 1045
CseI	GACGC	1 cut(s)	89
Csp6I	GTAC	3 cut(s)	376, 610, 1080
CviAII	CATG	4 cut(s)	142, 461, 767, 875
CviQI	GTAC	3 cut(s)	376, 610, 1080
DpnI	GATC	6 cut(s)	33, 225, 362, 794, 918, 1123
DpnII	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
DraI	TTTAAA	1 cut(s)	789
EaeI	YGGCCR	1 cut(s)	150
Ecl136II	GAGCTC	1 cut(s)	67
Eco130I	CCWWGG	1 cut(s)	657
Eco24I	GRGCYC	1 cut(s)	69
Eco31I	GGTCTC	2 cut(s)	217, 523
Eco47I	GGWCC	2 cut(s)	523, 1045
Eco53kI	GAGCTC	1 cut(s)	67
Eco57I	CTGAAG	3 cut(s)	171, 956, 1212
Eco81I	CCTNAGG	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	67
EcoNI	CCTNNNNNAGG	1 cut(s)	738
EcoO109I	RGGNCCY	1 cut(s)	697
EcoRI	GAATTC	1 cut(s)	942
EcoRII	CCWGG	2 cut(s)	71, 152
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	2 cut(s)	143, 640
EcoT38I	GRGCYC	1 cut(s)	69
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	4 cut(s)	145, 464, 770, 878
FatI	CATG	4 cut(s)	141, 460, 766, 874
FblI	GTMKAC	1 cut(s)	414
Fnu4HI	GCNGC	2 cut(s)	1075, 1100
FokI	GGATG	3 cut(s)	452, 770, 827
FriOI	GRGCYC	1 cut(s)	69
Fsp4HI	GCNGC	2 cut(s)	1075, 1100
FspAI	RTGCGCAY	1 cut(s)	674
FspBI	CTAG	1 cut(s)	725
FspI	TGCGCA	1 cut(s)	674
GlaI	GCGC	2 cut(s)	353, 674
GluI	GCNGC	2 cut(s)	1075, 1100
GsuI	CTGGAG	1 cut(s)	407
HaeIII	GGCC	4 cut(s)	77, 87, 152, 698
HapII	CCGG	1 cut(s)	403
HgaI	GACGC	1 cut(s)	89
HhaI	GCGC	2 cut(s)	354, 675
Hin1II	CATG	4 cut(s)	145, 464, 770, 878
Hin6I	GCGC	2 cut(s)	352, 673
HinP1I	GCGC	2 cut(s)	352, 673
HindIII	AAGCTT	1 cut(s)	574
HinfI	GANTC	6 cut(s)	54, 391, 587, 802, 932, 1054
HpaII	CCGG	1 cut(s)	403
HphI	GGTGA	4 cut(s)	49, 157, 641, 1075
Hpy166II	GTNNAC	1 cut(s)	415
Hpy188III	TCNNGA	6 cut(s)	227, 278, 290, 496, 601, 936
Hpy8I	GTNNAC	1 cut(s)	415
Hpy99I	CGWCG	2 cut(s)	83, 995
HpyAV	CCTTC	3 cut(s)	480, 688, 748
HpyCH4III	ACNGT	3 cut(s)	244, 953, 1037
HpyCH4V	TGCA	8 cut(s)	123, 141, 234, 252, 638, 885, 1154, 1213
HpyF10VI	GCNNNNNNNGC	6 cut(s)	349, 730, 767, 1019, 1108, 1210
Hsp92II	CATG	4 cut(s)	145, 464, 770, 878
HspAI	GCGC	2 cut(s)	352, 673
Kzo9I	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
Lsp1109I	GCAGC	1 cut(s)	1111
LweI	GCATC	3 cut(s)	625, 748, 805
MaeI	CTAG	1 cut(s)	725
MaeIII	GTNAC	4 cut(s)	171, 259, 335, 451
MalI	GATC	6 cut(s)	33, 225, 362, 794, 918, 1123
MboI	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
MboII	GAAGA	4 cut(s)	41, 644, 890, 1205
MfeI	CAATTG	2 cut(s)	678, 746
MflI	RGATCY	5 cut(s)	31, 223, 360, 792, 916
MhlI	GDGCHC	2 cut(s)	69, 427
MlsI	TGGCCA	1 cut(s)	152
MluCI	AATT	8 cut(s)	430, 596, 678, 686, 746, 841, 942, 1170
MluNI	TGGCCA	1 cut(s)	152
MlyI	GAGTC	2 cut(s)	596, 796
MnlI	CCTC	9 cut(s)	19, 31, 70, 85, 522, 655, 801, 891, 1134
Mox20I	TGGCCA	1 cut(s)	152
Mph1103I	ATGCAT	2 cut(s)	143, 640
MscI	TGGCCA	1 cut(s)	152
MseI	TTAA	5 cut(s)	356, 560, 788, 978, 1028
MslI	CAYNNNNRTG	2 cut(s)	146, 680
Msp20I	TGGCCA	1 cut(s)	152
MspA1I	CMGCKG	2 cut(s)	191, 1077
MspI	CCGG	1 cut(s)	403
MspR9I	CCNGG	2 cut(s)	73, 154
MunI	CAATTG	2 cut(s)	678, 746
Mva1269I	GAATGC	1 cut(s)	143
MvaI	CCWGG	2 cut(s)	73, 154
MwoI	GCNNNNNNNGC	6 cut(s)	349, 730, 767, 1019, 1108, 1210
NdeII	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
NlaIII	CATG	4 cut(s)	145, 464, 770, 878
NlaIV	GGNNCC	1 cut(s)	699
NmuCI	GTSAC	3 cut(s)	171, 335, 451
NsbI	TGCGCA	1 cut(s)	674
NsiI	ATGCAT	2 cut(s)	143, 640
NspI	RCATGY	2 cut(s)	464, 770
OliI	CACNNNNGTG	1 cut(s)	680
PaeI	GCATGC	1 cut(s)	770
PciI	ACATGT	1 cut(s)	460
PctI	GAATGC	1 cut(s)	143
PfeI	GAWTC	4 cut(s)	54, 391, 932, 1054
PkrI	GCNGC	2 cut(s)	1076, 1101
PleI	GAGTC	2 cut(s)	595, 796
PpsI	GAGTC	2 cut(s)	595, 796
PscI	ACATGT	1 cut(s)	460
PshBI	ATTAAT	1 cut(s)	978
Psp124BI	GAGCTC	1 cut(s)	69
Psp6I	CCWGG	2 cut(s)	71, 152
PspGI	CCWGG	2 cut(s)	71, 152
PspN4I	GGNNCC	1 cut(s)	699
PspPI	GGNCC	5 cut(s)	75, 86, 523, 697, 1045
PstNI	CAGNNNCTG	1 cut(s)	811
PsuI	RGATCY	5 cut(s)	31, 223, 360, 792, 916
PvuII	CAGCTG	1 cut(s)	191
RsaI	GTAC	3 cut(s)	377, 611, 1081
RsaNI	GTAC	3 cut(s)	376, 610, 1080
RseI	CAYNNNNRTG	2 cut(s)	146, 680
SacI	GAGCTC	1 cut(s)	69
SaqAI	TTAA	5 cut(s)	356, 560, 788, 978, 1028
SatI	GCNGC	2 cut(s)	1075, 1100
Sau3AI	GATC	6 cut(s)	31, 223, 360, 792, 916, 1121
Sau96I	GGNCC	5 cut(s)	75, 86, 523, 697, 1045
ScaI	AGTACT	1 cut(s)	611
SchI	GAGTC	2 cut(s)	596, 796
ScrFI	CCNGG	2 cut(s)	73, 154
SduI	GDGCHC	2 cut(s)	69, 427
SfaNI	GCATC	3 cut(s)	625, 748, 805
SfcI	CTRYAG	1 cut(s)	738
SinI	GGWCC	2 cut(s)	523, 1045
SmiMI	CAYNNNNRTG	2 cut(s)	146, 680
SmlI	CTYRAG	3 cut(s)	227, 290, 418
SmoI	CTYRAG	3 cut(s)	227, 290, 418
SphI	GCATGC	1 cut(s)	770
Sse9I	AATT	8 cut(s)	430, 596, 678, 686, 746, 841, 942, 1170
SsiI	CCGC	2 cut(s)	312, 1075
SspI	AATATT	1 cut(s)	511
SspMI	CTAG	1 cut(s)	725
SstI	GAGCTC	1 cut(s)	69
StyD4I	CCNGG	2 cut(s)	71, 152
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	3 cut(s)	244, 953, 1037
TaqI	TCGA	3 cut(s)	162, 993, 1174
TasI	AATT	8 cut(s)	430, 596, 678, 686, 746, 841, 942, 1170
TatI	WGTACW	3 cut(s)	375, 609, 1079
TauI	GCSGC	1 cut(s)	1077
TfiI	GAWTC	4 cut(s)	54, 391, 932, 1054
Tru1I	TTAA	5 cut(s)	356, 560, 788, 978, 1028
Tru9I	TTAA	5 cut(s)	356, 560, 788, 978, 1028
TscAI	CASTG	4 cut(s)	247, 460, 719, 1215
TseFI	GTSAC	3 cut(s)	171, 335, 451
TseI	GCWGC	1 cut(s)	1099
Tsp45I	GTSAC	3 cut(s)	171, 335, 451
TspDTI	ATGAA	5 cut(s)	297, 462, 891, 945, 1067
TspGWI	ACGGA	2 cut(s)	34, 140
TspRI	CASTG	4 cut(s)	247, 460, 719, 1215
VpaK11BI	GGWCC	2 cut(s)	523, 1045
VspI	ATTAAT	1 cut(s)	978
XagI	CCTNNNNNAGG	1 cut(s)	738
XapI	RAATTY	4 cut(s)	430, 596, 686, 942
XceI	RCATGY	2 cut(s)	464, 770
XmiI	GTMKAC	1 cut(s)	414
XspI	CTAG	1 cut(s)	725
ZrmI	AGTACT	1 cut(s)	611
Zsp2I	ATGCAT	2 cut(s)	143, 640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.