Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

76060309 .. 76061261

Gene Structure 953 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G048480.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 543 bp

ATGTTTGTTTGCGTTGTTACATTGCAGTGTGATTTGTTAGATATGCCTGTTGTAGCGCAGTCGGAGAAGGATGCTAAACATGCATTGGCATATCAGCTTTTGAAGGTATTTTTGACCCAGAGGCTGGATGCGTACTTGGAGTTTCAGGCAGCAAATTCTACTCTGCTACAAAGCTGTGGTCTGGTCCATGAAGATTGTATTACTAAGATGAGGTTGATTTCATTGGTGGATCTGGGCTGTGATGAATCTGGACGAATTCCTTATAGTCTCACTAGAGATACACTTCAGATTAATGATGATGAAGTGGAACCTTGGGTAGTTAAGGCTATAACAGCCAAGTTATTGGACTGTAAGATGGACCAGATGAATGAAGCTGTAGTTGTAACCCGCTCTACTCAGTGTGTGTTTGGCAAGGAGCAATGGCATACCCTCAAGACAAAGCTAGCATCTTGGAGGGGCAATATTGCACACGTCATCAGCACTGTTCAAGCTAACAGGCCCGCAGAAGATGGTGCCCGGGCAGCTCAAGGCTTGGTTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

180

Amino Acids

20.09

Weight (kDa)

5.79

Isoelectric Point (pI)

34.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	52 - 129	5.5e-10	PCI domain
eIF3m_C_helix	PF18005	135 - 162	3.1e-11	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	512
AccB7I	CCANNNNNTGG	1 cut(s)	124
AccBSI	CCGCTC	1 cut(s)	390
AciI	CCGC	2 cut(s)	388, 501
AclWI	GGATC	1 cut(s)	237
AcsI	RAATTY	2 cut(s)	154, 255
AcuI	CTGAAG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	103, 488
AjiI	CACGTC	1 cut(s)	472
AluBI	AGCT	6 cut(s)	97, 174, 374, 442, 491, 524
AluI	AGCT	6 cut(s)	97, 174, 374, 442, 491, 524
Alw26I	GTCTC	1 cut(s)	272
AlwI	GGATC	1 cut(s)	237
AlwNI	CAGNNNCTG	1 cut(s)	124
Ama87I	CYCGRG	1 cut(s)	516
AoxI	GGCC	1 cut(s)	497
ApeKI	GCWGC	2 cut(s)	149, 521
ApoI	RAATTY	2 cut(s)	154, 255
ArsI	GACNNNNNNTTYG	2 cut(s)	163, 195
AseI	ATTAAT	1 cut(s)	291
AspLEI	GCGC	1 cut(s)	58
AspS9I	GGNCC	3 cut(s)	184, 358, 498
AsuC2I	CCSGG	2 cut(s)	517, 518
AsuNHI	GCTAGC	1 cut(s)	442
AvaI	CYCGRG	1 cut(s)	516
AvaII	GGWCC	2 cut(s)	184, 358
BaeGI	GKGCMC	1 cut(s)	517
BanI	GGYRCC	1 cut(s)	512
BbvI	GCAGC	2 cut(s)	161, 533
BccI	CCATC	2 cut(s)	349, 503
BcnI	CCSGG	2 cut(s)	517, 518
BcoDI	GTCTC	1 cut(s)	272
BfaI	CTAG	2 cut(s)	273, 443
BfmI	CTRYAG	1 cut(s)	375
BisI	GCNGC	2 cut(s)	150, 522
BlsI	GCNGC	2 cut(s)	151, 523
Bme1390I	CCNGG	2 cut(s)	517, 518
Bme18I	GGWCC	2 cut(s)	184, 358
BmeT110I	CYCGRG	1 cut(s)	516
BmgBI	CACGTC	1 cut(s)	472
BmgT120I	GGNCC	3 cut(s)	184, 358, 498
BmiI	GGNNCC	2 cut(s)	309, 514
BmrFI	CCNGG	2 cut(s)	517, 518
BmsI	GCATC	3 cut(s)	61, 118, 455
BmtI	GCTAGC	1 cut(s)	446
BpuEI	CTTGAG	2 cut(s)	416, 510
BpuMI	CCSGG	2 cut(s)	517, 518
BsaJI	CCNNGG	2 cut(s)	311, 516
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse3DI	GCAATG	2 cut(s)	20, 425
BseDI	CCNNGG	2 cut(s)	311, 516
BseGI	GGATG	2 cut(s)	76, 133
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMI	GCAATG	2 cut(s)	20, 425
BseMII	CTCAG	1 cut(s)	410
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	2 cut(s)	161, 533
BshFI	GGCC	1 cut(s)	499
BshNI	GGYRCC	1 cut(s)	512
BsiHKCI	CYCGRG	1 cut(s)	516
BsiSI	CCGG	1 cut(s)	517
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmAI	GTCTC	1 cut(s)	272
BsnI	GGCC	1 cut(s)	499
BsoBI	CYCGRG	1 cut(s)	516
Bsp1286I	GDGCHC	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	229
BspACI	CCGC	2 cut(s)	388, 501
BspANI	GGCC	1 cut(s)	499
BspCNI	CTCAG	1 cut(s)	409
BspLI	GGNNCC	2 cut(s)	309, 514
BspOI	GCTAGC	1 cut(s)	446
BspPI	GGATC	1 cut(s)	237
BspT107I	GGYRCC	1 cut(s)	512
BsrBI	CCGCTC	1 cut(s)	390
BsrDI	GCAATG	2 cut(s)	20, 425
BssECI	CCNNGG	2 cut(s)	311, 516
BssMI	GATC	1 cut(s)	229
BssT1I	CCWWGG	1 cut(s)	311
Bst4CI	ACNGT	2 cut(s)	350, 484
BstC8I	GCNNGC	2 cut(s)	444, 501
BstDEI	CTNAG	2 cut(s)	204, 396
BstF5I	GGATG	2 cut(s)	76, 133
BstHHI	GCGC	1 cut(s)	58
BstKTI	GATC	1 cut(s)	232
BstMAI	GTCTC	1 cut(s)	272
BstMBI	GATC	1 cut(s)	229
BstMWI	GCNNNNNNNGC	3 cut(s)	80, 332, 521
BstNSI	RCATGY	1 cut(s)	83
BstSCI	CCNGG	2 cut(s)	515, 516
BstSFI	CTRYAG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	517
BstV1I	GCAGC	2 cut(s)	161, 533
BstX2I	RGATCY	1 cut(s)	229
BstXI	CCANNNNNNTGG	1 cut(s)	343
BstYI	RGATCY	1 cut(s)	229
BsuRI	GGCC	1 cut(s)	499
BtrI	CACGTC	1 cut(s)	472
BtsCI	GGATG	2 cut(s)	76, 133
BtsI	GCAGTG	1 cut(s)	32
BtsIMutI	CAGTG	3 cut(s)	32, 404, 480
Cac8I	GCNNGC	2 cut(s)	444, 501
CaiI	CAGNNNCTG	1 cut(s)	124
CfoI	GCGC	1 cut(s)	58
Cfr13I	GGNCC	3 cut(s)	184, 358, 498
Cfr9I	CCCGGG	1 cut(s)	516
Csp6I	GTAC	1 cut(s)	133
CviAII	CATG	2 cut(s)	80, 188
CviQI	GTAC	1 cut(s)	133
DdeI	CTNAG	2 cut(s)	204, 396
DpnI	GATC	1 cut(s)	231
DpnII	GATC	1 cut(s)	229
Eco130I	CCWWGG	1 cut(s)	311
Eco47I	GGWCC	2 cut(s)	184, 358
Eco57I	CTGAAG	1 cut(s)	269
Eco88I	CYCGRG	1 cut(s)	516
EcoRI	GAATTC	1 cut(s)	255
EcoT14I	CCWWGG	1 cut(s)	311
EcoT22I	ATGCAT	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	311
FaeI	CATG	2 cut(s)	83, 191
FaiI	YATR	7 cut(s)	44, 81, 91, 189, 264, 329, 426
FatI	CATG	2 cut(s)	79, 187
FauI	CCCGC	2 cut(s)	395, 508
Fnu4HI	GCNGC	2 cut(s)	150, 522
FokI	GGATG	2 cut(s)	83, 140
Fsp4HI	GCNGC	2 cut(s)	150, 522
FspBI	CTAG	2 cut(s)	273, 443
GlaI	GCGC	1 cut(s)	57
GluI	GCNGC	2 cut(s)	150, 522
HaeIII	GGCC	1 cut(s)	499
HapII	CCGG	1 cut(s)	517
HhaI	GCGC	1 cut(s)	58
Hin1II	CATG	2 cut(s)	83, 191
Hin6I	GCGC	1 cut(s)	56
HinP1I	GCGC	1 cut(s)	56
HinfI	GANTC	1 cut(s)	245
HpaII	CCGG	1 cut(s)	517
Hpy188I	TCNGA	2 cut(s)	64, 288
Hpy188III	TCNNGA	2 cut(s)	249, 433
HpyAV	CCTTC	2 cut(s)	61, 97
HpyCH4III	ACNGT	2 cut(s)	350, 484
HpyCH4IV	ACGT	1 cut(s)	471
HpyCH4V	TGCA	3 cut(s)	25, 83, 467
HpyF10VI	GCNNNNNNNGC	3 cut(s)	80, 332, 521
HpyF3I	CTNAG	2 cut(s)	204, 396
HpySE526I	ACGT	1 cut(s)	471
Hsp92II	CATG	2 cut(s)	83, 191
HspAI	GCGC	1 cut(s)	56
Kzo9I	GATC	1 cut(s)	229
LmnI	GCTCC	1 cut(s)	415
Lsp1109I	GCAGC	2 cut(s)	161, 533
LweI	GCATC	3 cut(s)	61, 118, 455
MaeI	CTAG	2 cut(s)	273, 443
MaeII	ACGT	1 cut(s)	471
MaeIII	GTNAC	2 cut(s)	16, 382
MalI	GATC	1 cut(s)	231
MbiI	CCGCTC	1 cut(s)	390
MboI	GATC	1 cut(s)	229
MboII	GAAGA	2 cut(s)	203, 518
MflI	RGATCY	1 cut(s)	229
MhlI	GDGCHC	1 cut(s)	517
MluCI	AATT	2 cut(s)	154, 255
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	4 cut(s)	114, 204, 440, 447
Mph1103I	ATGCAT	1 cut(s)	85
MseI	TTAA	2 cut(s)	291, 321
MslI	CAYNNNNRTG	1 cut(s)	25
MspI	CCGG	1 cut(s)	517
MspR9I	CCNGG	2 cut(s)	517, 518
MwoI	GCNNNNNNNGC	3 cut(s)	80, 332, 521
NciI	CCSGG	2 cut(s)	517, 518
NdeII	GATC	1 cut(s)	229
NheI	GCTAGC	1 cut(s)	442
NlaIII	CATG	2 cut(s)	83, 191
NlaIV	GGNNCC	2 cut(s)	309, 514
NsiI	ATGCAT	1 cut(s)	85
NspI	RCATGY	1 cut(s)	83
PfeI	GAWTC	1 cut(s)	245
PflMI	CCANNNNNTGG	1 cut(s)	124
PkrI	GCNGC	2 cut(s)	151, 523
PshBI	ATTAAT	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	309, 514
PspPI	GGNCC	3 cut(s)	184, 358, 498
PstNI	CAGNNNCTG	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	229
RsaI	GTAC	1 cut(s)	134
RsaNI	GTAC	1 cut(s)	133
RseI	CAYNNNNRTG	1 cut(s)	25
SaqAI	TTAA	2 cut(s)	291, 321
SatI	GCNGC	2 cut(s)	150, 522
Sau3AI	GATC	1 cut(s)	229
Sau96I	GGNCC	3 cut(s)	184, 358, 498
ScrFI	CCNGG	2 cut(s)	517, 518
SduI	GDGCHC	1 cut(s)	517
SfaNI	GCATC	3 cut(s)	61, 118, 455
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	184, 358
SmaI	CCCGGG	1 cut(s)	518
SmiMI	CAYNNNNRTG	1 cut(s)	25
SmlI	CTYRAG	2 cut(s)	431, 525
SmoI	CTYRAG	2 cut(s)	431, 525
SrfI	GCCCGGGC	1 cut(s)	518
Sse9I	AATT	2 cut(s)	154, 255
SsiI	CCGC	2 cut(s)	388, 501
SspI	AATATT	1 cut(s)	463
SspMI	CTAG	2 cut(s)	273, 443
StyD4I	CCNGG	2 cut(s)	515, 516
StyI	CCWWGG	1 cut(s)	311
TaaI	ACNGT	2 cut(s)	350, 484
TaiI	ACGT	1 cut(s)	474
TasI	AATT	2 cut(s)	154, 255
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	2 cut(s)	291, 321
Tru9I	TTAA	2 cut(s)	291, 321
TscAI	CASTG	3 cut(s)	32, 404, 487
TseI	GCWGC	2 cut(s)	149, 521
TspDTI	ATGAA	6 cut(s)	204, 210, 258, 315, 380, 384
TspMI	CCCGGG	1 cut(s)	516
TspRI	CASTG	3 cut(s)	32, 404, 487
Van91I	CCANNNNNTGG	1 cut(s)	124
VpaK11BI	GGWCC	2 cut(s)	184, 358
VspI	ATTAAT	1 cut(s)	291
XapI	RAATTY	2 cut(s)	154, 255
XceI	RCATGY	1 cut(s)	83
XmaI	CCCGGG	1 cut(s)	516
XspI	CTAG	2 cut(s)	273, 443
Zsp2I	ATGCAT	1 cut(s)	85

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.