Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

64625773 .. 64626984

Gene Structure 1212 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0515200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTAAATTCTAAGCTGCAAGCGCTGTGGAACCACCCCGCCGGCCCAAAAACTATTCATTTCTGGGCTCCAACTTTCAAATGGGGAATAACCATTGCAAATATTCTCGACTCCTCTAAACCACCTGAGCAAGTTTCCTATGCTCAACAAGCAGCGATTATGGGCAGTGGACTTATATGGACAAGATGGGGCACAGTAATTACCCCAAAGAACTGGAATCTAGTCAGCGTCAATTTTGGGATGGCTGTCACTTCCATGTTTCAACTTGCACGTAAAACTCAGCATGACTACTTATCTTCCAATGACCAACAAGCTGCTTCAGAGAGCATTGAAGACCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

113

Amino Acids

12.63

Weight (kDa)

8.09

Isoelectric Point (pI)

44.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MPC	PF03650	6 - 111	5e-38	Mitochondrial pyruvate carriers

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AcsI	RAATTY	1 cut(s)	7
AcuI	CTGAAG	1 cut(s)	303
AfeI	AGCGCT	1 cut(s)	24
AgsI	TTSAA	3 cut(s)	79, 263, 332
AluBI	AGCT	2 cut(s)	16, 314
AluI	AGCT	2 cut(s)	16, 314
Aor51HI	AGCGCT	1 cut(s)	24
AoxI	GGCC	1 cut(s)	43
ApeKI	GCWGC	3 cut(s)	16, 152, 314
ApoI	RAATTY	1 cut(s)	7
AspLEI	GCGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	44
BaeGI	GKGCMC	1 cut(s)	194
BanII	GRGCYC	1 cut(s)	70
BbvI	GCAGC	3 cut(s)	3, 164, 301
BccI	CCATC	2 cut(s)	180, 235
BfaI	CTAG	1 cut(s)	221
BfoI	RGCGCY	1 cut(s)	26
BisI	GCNGC	3 cut(s)	17, 153, 315
BlsI	GCNGC	3 cut(s)	18, 154, 316
BmgT120I	GGNCC	1 cut(s)	44
BmiI	GGNNCC	2 cut(s)	32, 69
Bpu10I	CCTNAGC	1 cut(s)	126
BsaAI	YACGTR	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	41
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	93
BseGI	GGATG	1 cut(s)	246
BseMI	GCAATG	1 cut(s)	93
BseMII	CTCAG	2 cut(s)	117, 293
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	103
BseSI	GKGCMC	1 cut(s)	194
BseXI	GCAGC	3 cut(s)	3, 164, 301
BshFI	GGCC	1 cut(s)	45
BsiSI	CCGG	1 cut(s)	42
BsnI	GGCC	1 cut(s)	45
Bsp1286I	GDGCHC	2 cut(s)	70, 194
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	1 cut(s)	45
BspCNI	CTCAG	2 cut(s)	118, 292
BspLI	GGNNCC	2 cut(s)	32, 69
BsrDI	GCAATG	1 cut(s)	93
BsrFI	RCCGGY	1 cut(s)	41
BsrI	ACTGG	1 cut(s)	218
BssAI	RCCGGY	1 cut(s)	41
Bst4CI	ACNGT	1 cut(s)	196
BstBAI	YACGTR	1 cut(s)	272
BstC8I	GCNNGC	2 cut(s)	21, 43
BstDEI	CTNAG	3 cut(s)	12, 126, 279
BstF5I	GGATG	1 cut(s)	246
BstH2I	RGCGCY	1 cut(s)	26
BstHHI	GCGC	1 cut(s)	25
BstMWI	GCNNNNNNNGC	2 cut(s)	22, 149
BstSLI	GKGCMC	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	3, 164, 301
BstXI	CCANNNNNNTGG	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	45
BtsCI	GGATG	1 cut(s)	246
BtsI	GCAGTG	1 cut(s)	172
BtsIMutI	CAGTG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	21, 43
CfoI	GCGC	1 cut(s)	25
Cfr10I	RCCGGY	1 cut(s)	41
Cfr13I	GGNCC	1 cut(s)	44
CseI	GACGC	1 cut(s)	217
CspCI	CAANNNNNGTGG	2 cut(s)	8, 43
CviAII	CATG	2 cut(s)	256, 284
CviJI	RGCY	5 cut(s)	16, 45, 68, 245, 314
CviKI_1	RGCY	5 cut(s)	16, 45, 68, 245, 314
DdeI	CTNAG	3 cut(s)	12, 126, 279
Eco24I	GRGCYC	1 cut(s)	70
Eco47III	AGCGCT	1 cut(s)	24
Eco57I	CTGAAG	1 cut(s)	303
EcoT38I	GRGCYC	1 cut(s)	70
FaeI	CATG	2 cut(s)	259, 287
FaiI	YATR	6 cut(s)	141, 161, 176, 178, 257, 285
FatI	CATG	2 cut(s)	255, 283
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	3 cut(s)	17, 153, 315
FokI	GGATG	1 cut(s)	253
FriOI	GRGCYC	1 cut(s)	70
Fsp4HI	GCNGC	3 cut(s)	17, 153, 315
FspBI	CTAG	1 cut(s)	221
GlaI	GCGC	1 cut(s)	24
GluI	GCNGC	3 cut(s)	17, 153, 315
HaeII	RGCGCY	1 cut(s)	26
HaeIII	GGCC	1 cut(s)	45
HapII	CCGG	1 cut(s)	42
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	1 cut(s)	25
Hin1II	CATG	2 cut(s)	259, 287
Hin6I	GCGC	1 cut(s)	23
HinP1I	GCGC	1 cut(s)	23
HinfI	GANTC	2 cut(s)	110, 217
HpaII	CCGG	1 cut(s)	42
Hpy166II	GTNNAC	1 cut(s)	170
Hpy188I	TCNGA	1 cut(s)	322
Hpy188III	TCNNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	170
HpyCH4III	ACNGT	1 cut(s)	196
HpyCH4IV	ACGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	19, 98, 269
HpyF10VI	GCNNNNNNNGC	2 cut(s)	22, 149
HpyF3I	CTNAG	3 cut(s)	12, 126, 279
HpySE526I	ACGT	1 cut(s)	271
Hsp92II	CATG	2 cut(s)	259, 287
HspAI	GCGC	1 cut(s)	23
KroI	GCCGGC	1 cut(s)	41
KroNI	GCCGGC	1 cut(s)	43
LmnI	GCTCC	1 cut(s)	73
LpnPI	CCDG	4 cut(s)	49, 55, 138, 199
Lsp1109I	GCAGC	3 cut(s)	3, 164, 301
MaeI	CTAG	1 cut(s)	221
MaeII	ACGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	247
MboII	GAAGA	1 cut(s)	288
MhlI	GDGCHC	2 cut(s)	70, 194
MluCI	AATT	3 cut(s)	7, 198, 232
MlyI	GAGTC	1 cut(s)	104
MmeI	TCCRAC	1 cut(s)	95
MnlI	CCTC	1 cut(s)	124
MroNI	GCCGGC	1 cut(s)	41
MslI	CAYNNNNRTG	1 cut(s)	254
MspI	CCGG	1 cut(s)	42
MwoI	GCNNNNNNNGC	2 cut(s)	22, 149
NaeI	GCCGGC	1 cut(s)	43
NgoMIV	GCCGGC	1 cut(s)	41
NlaIII	CATG	2 cut(s)	259, 287
NlaIV	GGNNCC	2 cut(s)	32, 69
NmuCI	GTSAC	1 cut(s)	247
PdiI	GCCGGC	1 cut(s)	43
PfeI	GAWTC	1 cut(s)	217
PkrI	GCNGC	3 cut(s)	18, 154, 316
PleI	GAGTC	1 cut(s)	104
PpsI	GAGTC	1 cut(s)	104
Ppu21I	YACGTR	1 cut(s)	272
PspN4I	GGNNCC	2 cut(s)	32, 69
PspPI	GGNCC	1 cut(s)	44
RseI	CAYNNNNRTG	1 cut(s)	254
SatI	GCNGC	3 cut(s)	17, 153, 315
Sau96I	GGNCC	1 cut(s)	44
SchI	GAGTC	1 cut(s)	104
SduI	GDGCHC	2 cut(s)	70, 194
SetI	ASST	4 cut(s)	18, 127, 274, 316
SmiMI	CAYNNNNRTG	1 cut(s)	254
Sse9I	AATT	3 cut(s)	7, 198, 232
SsiI	CCGC	1 cut(s)	39
SspI	AATATT	1 cut(s)	103
SspMI	CTAG	1 cut(s)	221
TaaI	ACNGT	1 cut(s)	196
TaiI	ACGT	1 cut(s)	274
TaqI	TCGA	1 cut(s)	108
TasI	AATT	3 cut(s)	7, 198, 232
TfiI	GAWTC	1 cut(s)	217
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	3 cut(s)	16, 152, 314
Tsp45I	GTSAC	1 cut(s)	247
TspDTI	ATGAA	1 cut(s)	47
TspRI	CASTG	1 cut(s)	172
XapI	RAATTY	1 cut(s)	7
XcmI	CCANNNNNNNNNTGG	1 cut(s)	78
XspI	CTAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.