Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

tig00012433

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

69783 .. 71663

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12433g00080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGCAAAACTTATATCCTCAAAGATTACTCAAAAACCAAGTGACAAGCCTGCACTGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCGCTTAATTTGGCAATCAATGGGAAGGTCGCTGAACATGTCATCCCTTCATTCAAAAAGGTGGAAAGTTTTTTGAAAGAGTGGAATATTGGGATCTCTGATCAGAGGCAGTTATTTCTTGCCATTGCTAATGTTCTGAAAGAACACAAAAACTTGACAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACTTTTTCTGGTGAAGATGCACATACATTGAGTGAAGCTAAAGAGGAAGCTGTACGCACAATTGTTGAGTTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATATGCCTGCTGTAGAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCCTATCAGCTTTTAAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGCAAATTCTGATTTACTGAAAAGCTACGGTCTTGGCCATGAAGACTGCATAACTAAAATGAGGTTGATTTCGTTGATGGATCTTGGTTCTGATGAATCTGGACGGATTCCTTACGGTGTTATCAAAGATACTCTTCAGATTAATGATGACGAAGTTGAACTTTGGGTGGTAAAGGCAATAACTGCCAAGTTAATGGACTGTAAAATGGACCAGATGAACCAAGTGGTGATTGTGAGCCGCTGTACTCTGAGAGTATTTGGAGAAGAACAATGGCTTACACTAAGAACAAAGTTAGCAACTTGGAGGGGTAATATTGCAAATGTTATCAGCACCATTCGAGCTAACAGGATATCTGACGATGGATCACAGGCGGTGCAAGGCTTAGTTATTCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

313

Amino Acids

35.43

Weight (kDa)

8.21

Isoelectric Point (pI)

23.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	184 - 261	1.6e-12	PCI domain
eIF3m_C_helix	PF18005	265 - 293	6.6e-13	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	292
AccI	GTMKAC	1 cut(s)	120
AciI	CCGC	2 cut(s)	781, 914
AclWI	GGATC	3 cut(s)	230, 630, 913
AcoI	YGGCCR	1 cut(s)	577
AcsI	RAATTY	2 cut(s)	302, 547
AcuI	CTGAAG	1 cut(s)	662
AfaI	GTAC	4 cut(s)	83, 317, 378, 787
AflIII	ACRYGT	2 cut(s)	166, 411
AgsI	TTSAA	5 cut(s)	76, 184, 205, 301, 701
AloI	GAACNNNNNNTCC	2 cut(s)	156, 188
AluBI	AGCT	5 cut(s)	362, 374, 490, 567, 884
AluI	AGCT	5 cut(s)	362, 374, 490, 567, 884
AlwI	GGATC	3 cut(s)	230, 630, 913
AlwNI	CAGNNNCTG	1 cut(s)	517
AoxI	GGCC	3 cut(s)	402, 480, 577
ApeKI	GCWGC	1 cut(s)	542
ApoI	RAATTY	2 cut(s)	302, 547
AseI	ATTAAT	1 cut(s)	684
AspLEI	GCGC	2 cut(s)	60, 133
AspS9I	GGNCC	2 cut(s)	403, 751
AsuHPI	GGTGA	2 cut(s)	347, 781
AvaII	GGWCC	1 cut(s)	751
BalI	TGGCCA	1 cut(s)	579
BbsI	GAAGAC	1 cut(s)	591
BbvI	GCAGC	1 cut(s)	529
BccI	CCATC	2 cut(s)	613, 896
BclI	TGATCA	1 cut(s)	229
BfmI	CTRYAG	1 cut(s)	444
BglII	AGATCT	1 cut(s)	498
BisI	GCNGC	2 cut(s)	543, 781
BlpI	GCTNAGC	1 cut(s)	468
BlsI	GCNGC	2 cut(s)	544, 782
BmcAI	AGTACT	1 cut(s)	317
Bme18I	GGWCC	1 cut(s)	751
BmgT120I	GGNCC	2 cut(s)	403, 751
BmiI	GGNNCC	1 cut(s)	405
BmsI	GCATC	3 cut(s)	331, 454, 511
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	113, 476
Bpu1102I	GCTNAGC	1 cut(s)	468
BpuEI	CTTGAG	1 cut(s)	145
Bse118I	RCCGGY	1 cut(s)	108
Bse1I	ACTGG	2 cut(s)	96, 459
Bse3DI	GCAATG	1 cut(s)	252
BseGI	GGATG	3 cut(s)	171, 469, 526
BseMI	GCAATG	1 cut(s)	252
BseMII	CTCAG	2 cut(s)	524, 782
BseNI	ACTGG	2 cut(s)	96, 459
BseXI	GCAGC	1 cut(s)	529
BsgI	GTGCAG	1 cut(s)	36
BshFI	GGCC	3 cut(s)	404, 482, 579
BsiSI	CCGG	1 cut(s)	109
BsnI	GGCC	3 cut(s)	404, 482, 579
Bsp1407I	TGTACA	1 cut(s)	81
Bsp143I	GATC	5 cut(s)	222, 229, 498, 622, 905
Bsp1720I	GCTNAGC	1 cut(s)	468
BspACI	CCGC	2 cut(s)	781, 914
BspANI	GGCC	3 cut(s)	404, 482, 579
BspCNI	CTCAG	2 cut(s)	523, 783
BspLI	GGNNCC	1 cut(s)	405
BspPI	GGATC	3 cut(s)	230, 630, 913
BsrDI	GCAATG	1 cut(s)	252
BsrFI	RCCGGY	1 cut(s)	108
BsrGI	TGTACA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	96, 459
BssAI	RCCGGY	1 cut(s)	108
BssMI	GATC	5 cut(s)	222, 229, 498, 622, 905
Bst4CI	ACNGT	3 cut(s)	572, 659, 743
Bst6I	CTCTTC	1 cut(s)	681
BstAPI	GCANNNNNTGC	1 cut(s)	725
BstAUI	TGTACA	1 cut(s)	81
BstC8I	GCNNGC	3 cut(s)	51, 441, 474
BstDEI	CTNAG	6 cut(s)	115, 468, 510, 791, 824, 925
BstF5I	GGATG	3 cut(s)	171, 469, 526
BstHHI	GCGC	2 cut(s)	60, 133
BstKTI	GATC	5 cut(s)	225, 232, 501, 625, 908
BstMBI	GATC	5 cut(s)	222, 229, 498, 622, 905
BstMWI	GCNNNNNNNGC	4 cut(s)	55, 436, 473, 725
BstNSI	RCATGY	3 cut(s)	170, 415, 476
BstSFI	CTRYAG	1 cut(s)	444
BstV1I	GCAGC	1 cut(s)	529
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	3 cut(s)	222, 498, 622
BstXI	CCANNNNNNTGG	2 cut(s)	319, 736
BstYI	RGATCY	3 cut(s)	222, 498, 622
BsuRI	GGCC	3 cut(s)	404, 482, 579
BtsCI	GGATG	3 cut(s)	171, 469, 526
BtsI	GCAGTG	1 cut(s)	53
BtsIMutI	CAGTG	2 cut(s)	53, 425
Cac8I	GCNNGC	3 cut(s)	51, 441, 474
CaiI	CAGNNNCTG	1 cut(s)	517
CfoI	GCGC	2 cut(s)	60, 133
Cfr10I	RCCGGY	1 cut(s)	108
Cfr13I	GGNCC	2 cut(s)	403, 751
Csp6I	GTAC	4 cut(s)	82, 316, 377, 786
CviAII	CATG	4 cut(s)	167, 412, 473, 581
CviQI	GTAC	4 cut(s)	82, 316, 377, 786
DdeI	CTNAG	6 cut(s)	115, 468, 510, 791, 824, 925
DpnI	GATC	5 cut(s)	224, 231, 500, 624, 907
DpnII	GATC	5 cut(s)	222, 229, 498, 622, 905
DraI	TTTAAA	1 cut(s)	495
DrdI	GACNNNNNNGTC	1 cut(s)	292
DseDI	GACNNNNNNGTC	1 cut(s)	292
EaeI	YGGCCR	1 cut(s)	577
Eam1104I	CTCTTC	1 cut(s)	681
EarI	CTCTTC	1 cut(s)	681
Eco32I	GATATC	1 cut(s)	894
Eco47I	GGWCC	1 cut(s)	751
Eco57I	CTGAAG	1 cut(s)	662
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRV	GATATC	1 cut(s)	894
EcoT22I	ATGCAT	1 cut(s)	478
FaeI	CATG	4 cut(s)	170, 415, 476, 584
FalI	AAGNNNNNCTT	4 cut(s)	660, 692, 687, 719
FatI	CATG	4 cut(s)	166, 411, 472, 580
FbaI	TGATCA	1 cut(s)	229
FblI	GTMKAC	1 cut(s)	120
Fnu4HI	GCNGC	2 cut(s)	543, 781
FokI	GGATG	3 cut(s)	158, 476, 533
Fsp4HI	GCNGC	2 cut(s)	543, 781
GlaI	GCGC	2 cut(s)	59, 132
GluI	GCNGC	2 cut(s)	543, 781
GsuI	CTGGAG	2 cut(s)	113, 476
HaeIII	GGCC	3 cut(s)	404, 482, 579
HapII	CCGG	1 cut(s)	109
HhaI	GCGC	2 cut(s)	60, 133
Hin1II	CATG	4 cut(s)	170, 415, 476, 584
Hin6I	GCGC	2 cut(s)	58, 131
HinP1I	GCGC	2 cut(s)	58, 131
HinfI	GANTC	4 cut(s)	293, 508, 638, 649
HpaII	CCGG	1 cut(s)	109
HphI	GGTGA	2 cut(s)	347, 781
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188III	TCNNGA	2 cut(s)	307, 642
Hpy8I	GTNNAC	1 cut(s)	121
HpyAV	CCTTC	4 cut(s)	148, 186, 394, 454
HpyCH4III	ACNGT	3 cut(s)	572, 659, 743
HpyCH4V	TGCA	7 cut(s)	53, 344, 476, 545, 591, 860, 919
HpyF10VI	GCNNNNNNNGC	4 cut(s)	55, 436, 473, 725
HpyF3I	CTNAG	6 cut(s)	115, 468, 510, 791, 824, 925
Hsp92II	CATG	4 cut(s)	170, 415, 476, 584
HspAI	GCGC	2 cut(s)	58, 131
Ksp22I	TGATCA	1 cut(s)	229
Kzo9I	GATC	5 cut(s)	222, 229, 498, 622, 905
Lsp1109I	GCAGC	1 cut(s)	529
LweI	GCATC	3 cut(s)	331, 454, 511
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	5 cut(s)	224, 231, 500, 624, 907
MboI	GATC	5 cut(s)	222, 229, 498, 622, 905
MboII	GAAGA	4 cut(s)	350, 596, 668, 818
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	3 cut(s)	222, 498, 622
MlsI	TGGCCA	1 cut(s)	579
MluCI	AATT	4 cut(s)	136, 302, 384, 547
MluNI	TGGCCA	1 cut(s)	579
MlyI	GAGTC	2 cut(s)	302, 502
MnlI	CCTC	6 cut(s)	28, 228, 361, 507, 597, 840
Mox20I	TGGCCA	1 cut(s)	579
Mph1103I	ATGCAT	1 cut(s)	478
MscI	TGGCCA	1 cut(s)	579
MseI	TTAA	5 cut(s)	62, 135, 494, 684, 734
Msp20I	TGGCCA	1 cut(s)	579
MspA1I	CMGCKG	1 cut(s)	783
MspI	CCGG	1 cut(s)	109
MunI	CAATTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	4 cut(s)	55, 436, 473, 725
NdeII	GATC	5 cut(s)	222, 229, 498, 622, 905
NlaIII	CATG	4 cut(s)	170, 415, 476, 584
NlaIV	GGNNCC	1 cut(s)	405
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	478
NspI	RCATGY	3 cut(s)	170, 415, 476
PaeI	GCATGC	1 cut(s)	476
PciI	ACATGT	2 cut(s)	166, 411
PfeI	GAWTC	2 cut(s)	638, 649
PkrI	GCNGC	2 cut(s)	544, 782
PleI	GAGTC	2 cut(s)	301, 502
PpsI	GAGTC	2 cut(s)	301, 502
PscI	ACATGT	2 cut(s)	166, 411
PshBI	ATTAAT	1 cut(s)	684
PspN4I	GGNNCC	1 cut(s)	405
PspPI	GGNCC	2 cut(s)	403, 751
PstNI	CAGNNNCTG	1 cut(s)	517
PsuI	RGATCY	3 cut(s)	222, 498, 622
RsaI	GTAC	4 cut(s)	83, 317, 378, 787
RsaNI	GTAC	4 cut(s)	82, 316, 377, 786
SaqAI	TTAA	5 cut(s)	62, 135, 494, 684, 734
SatI	GCNGC	2 cut(s)	543, 781
Sau3AI	GATC	5 cut(s)	222, 229, 498, 622, 905
Sau96I	GGNCC	2 cut(s)	403, 751
ScaI	AGTACT	1 cut(s)	317
SchI	GAGTC	2 cut(s)	302, 502
SetI	ASST	9 cut(s)	90, 159, 192, 364, 376, 492, 569, 608, 886
SfaNI	GCATC	3 cut(s)	331, 454, 511
SfcI	CTRYAG	1 cut(s)	444
SinI	GGWCC	1 cut(s)	751
SmlI	CTYRAG	1 cut(s)	124
SmoI	CTYRAG	1 cut(s)	124
SphI	GCATGC	1 cut(s)	476
Sse9I	AATT	4 cut(s)	136, 302, 384, 547
SsiI	CCGC	2 cut(s)	781, 914
SspI	AATATT	2 cut(s)	217, 856
TaaI	ACNGT	3 cut(s)	572, 659, 743
TaqI	TCGA	1 cut(s)	880
TasI	AATT	4 cut(s)	136, 302, 384, 547
TatI	WGTACW	3 cut(s)	81, 315, 785
TauI	GCSGC	1 cut(s)	783
TfiI	GAWTC	2 cut(s)	638, 649
Tru1I	TTAA	5 cut(s)	62, 135, 494, 684, 734
Tru9I	TTAA	5 cut(s)	62, 135, 494, 684, 734
TscAI	CASTG	2 cut(s)	60, 425
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	1 cut(s)	542
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	4 cut(s)	168, 597, 651, 773
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	2 cut(s)	60, 425
VpaK11BI	GGWCC	1 cut(s)	751
VspI	ATTAAT	1 cut(s)	684
XapI	RAATTY	2 cut(s)	302, 547
XceI	RCATGY	3 cut(s)	170, 415, 476
XmiI	GTMKAC	1 cut(s)	120
ZrmI	AGTACT	1 cut(s)	317
Zsp2I	ATGCAT	1 cut(s)	478

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.