Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Reverse (-)

41810616 .. 41812127

Gene Structure 1512 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G028000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGCCTGCTGTAGCGCAGTTGGAGAAGGATGCTAAACATGCATTGGCATATCAACTTTTGAAGGTATTTTTGACCCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCAGCAAATTCTACTCTGCTACAAAGCTGTGGTCTGGTCCATGAAGATTGTATTACTAAGATGAGGTTGATTTCATTGGTGGATCTGGTGGAACCTTGGGTGGTTAAGGCTATAACAGCCAAGTTATTGGTCTGTAGGATGGACCAGATGAATGAAGTTGTAGTAGTAACCCGCTCTACTCAGCGTGTGTTCGGCAAGGAGCAATGGCATACTTTTAAGACAAAGCTAGCATCTTCGAGGATAAGAACGACAAGGATTTGGATCGGGCGAGTGAGAGGCAGGATCTTGAAGGAAAAGAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

135

Amino Acids

15.53

Weight (kDa)

9.96

Isoelectric Point (pI)

29.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	82
AccBSI	CCGCTC	1 cut(s)	279
AciI	CCGC	1 cut(s)	277
AclWI	GGATC	3 cut(s)	195, 374, 395
AcsI	RAATTY	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	82
AgsI	TTSAA	2 cut(s)	61, 394
AluBI	AGCT	3 cut(s)	132, 331, 405
AluI	AGCT	3 cut(s)	132, 331, 405
AlwI	GGATC	3 cut(s)	195, 374, 395
AlwNI	CAGNNNCTG	1 cut(s)	82
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	112
ArsI	GACNNNNNNTTYG	2 cut(s)	121, 153
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	142, 247
AsuNHI	GCTAGC	1 cut(s)	331
AvaII	GGWCC	2 cut(s)	142, 247
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	238
BfaI	CTAG	1 cut(s)	332
BfmI	CTRYAG	2 cut(s)	9, 238
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme18I	GGWCC	2 cut(s)	142, 247
BmgT120I	GGNCC	2 cut(s)	142, 247
BmiI	GGNNCC	1 cut(s)	198
BmsI	GCATC	3 cut(s)	19, 76, 344
BmtI	GCTAGC	1 cut(s)	335
BsaBI	GATNNNNATC	1 cut(s)	365
BsaJI	CCNNGG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	1 cut(s)	82
Bse3DI	GCAATG	1 cut(s)	314
Bse8I	GATNNNNATC	1 cut(s)	365
BseDI	CCNNGG	1 cut(s)	200
BseGI	GGATG	3 cut(s)	34, 91, 249
BseJI	GATNNNNATC	1 cut(s)	365
BseLI	CCNNNNNNNGG	1 cut(s)	82
BseMI	GCAATG	1 cut(s)	314
BseMII	CTCAG	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	119
BslI	CCNNNNNNNGG	1 cut(s)	82
Bsp143I	GATC	3 cut(s)	187, 366, 387
BspACI	CCGC	1 cut(s)	277
BspCNI	CTCAG	1 cut(s)	298
BspLI	GGNNCC	1 cut(s)	198
BspOI	GCTAGC	1 cut(s)	335
BspPI	GGATC	3 cut(s)	195, 374, 395
BsrBI	CCGCTC	1 cut(s)	279
BsrDI	GCAATG	1 cut(s)	314
BssECI	CCNNGG	1 cut(s)	200
BssMI	GATC	3 cut(s)	187, 366, 387
BssT1I	CCWWGG	1 cut(s)	200
BstC8I	GCNNGC	2 cut(s)	6, 333
BstDEI	CTNAG	2 cut(s)	162, 285
BstF5I	GGATG	3 cut(s)	34, 91, 249
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	3 cut(s)	190, 369, 390
BstMBI	GATC	3 cut(s)	187, 366, 387
BstMWI	GCNNNNNNNGC	2 cut(s)	38, 221
BstNSI	RCATGY	1 cut(s)	41
BstSFI	CTRYAG	2 cut(s)	9, 238
BstV1I	GCAGC	1 cut(s)	119
BstX2I	RGATCY	2 cut(s)	187, 387
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	2 cut(s)	187, 387
BtsCI	GGATG	3 cut(s)	34, 91, 249
Cac8I	GCNNGC	2 cut(s)	6, 333
CaiI	CAGNNNCTG	1 cut(s)	82
CfoI	GCGC	1 cut(s)	16
Cfr13I	GGNCC	2 cut(s)	142, 247
CviAII	CATG	2 cut(s)	38, 146
CviJI	RGCY	6 cut(s)	82, 132, 215, 224, 331, 405
CviKI_1	RGCY	6 cut(s)	82, 132, 215, 224, 331, 405
DdeI	CTNAG	2 cut(s)	162, 285
DpnI	GATC	3 cut(s)	189, 368, 389
DpnII	GATC	3 cut(s)	187, 366, 387
Eco130I	CCWWGG	1 cut(s)	200
Eco47I	GGWCC	2 cut(s)	142, 247
EcoT14I	CCWWGG	1 cut(s)	200
EcoT22I	ATGCAT	1 cut(s)	43
ErhI	CCWWGG	1 cut(s)	200
FaeI	CATG	2 cut(s)	41, 149
FaiI	YATR	5 cut(s)	39, 49, 147, 218, 315
FatI	CATG	2 cut(s)	37, 145
FauI	CCCGC	1 cut(s)	284
Fnu4HI	GCNGC	1 cut(s)	108
FokI	GGATG	3 cut(s)	41, 98, 256
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	332
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	108
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	2 cut(s)	41, 149
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
Hpy188III	TCNNGA	1 cut(s)	391
HpyAV	CCTTC	3 cut(s)	19, 55, 388
HpyCH4V	TGCA	1 cut(s)	41
HpyF10VI	GCNNNNNNNGC	2 cut(s)	38, 221
HpyF3I	CTNAG	2 cut(s)	162, 285
Hsp92II	CATG	2 cut(s)	41, 149
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	3 cut(s)	187, 366, 387
LmnI	GCTCC	1 cut(s)	304
LpnPI	CCDG	8 cut(s)	18, 68, 89, 89, 125, 176, 263, 370
Lsp1109I	GCAGC	1 cut(s)	119
LweI	GCATC	3 cut(s)	19, 76, 344
MaeI	CTAG	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	271
MalI	GATC	3 cut(s)	189, 368, 389
MbiI	CCGCTC	1 cut(s)	279
MboI	GATC	3 cut(s)	187, 366, 387
MboII	GAAGA	2 cut(s)	161, 330
MflI	RGATCY	2 cut(s)	187, 387
MluCI	AATT	1 cut(s)	112
MnlI	CCTC	4 cut(s)	72, 162, 336, 374
Mph1103I	ATGCAT	1 cut(s)	43
MseI	TTAA	2 cut(s)	210, 321
MwoI	GCNNNNNNNGC	2 cut(s)	38, 221
NdeII	GATC	3 cut(s)	187, 366, 387
NheI	GCTAGC	1 cut(s)	331
NlaIII	CATG	2 cut(s)	41, 149
NlaIV	GGNNCC	1 cut(s)	198
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	1 cut(s)	41
PflMI	CCANNNNNTGG	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	109
PspN4I	GGNNCC	1 cut(s)	198
PspPI	GGNCC	2 cut(s)	142, 247
PstNI	CAGNNNCTG	1 cut(s)	82
PsuI	RGATCY	2 cut(s)	187, 387
SaqAI	TTAA	2 cut(s)	210, 321
SatI	GCNGC	1 cut(s)	108
Sau3AI	GATC	3 cut(s)	187, 366, 387
Sau96I	GGNCC	2 cut(s)	142, 247
SetI	ASST	6 cut(s)	66, 134, 173, 202, 333, 407
SfaNI	GCATC	3 cut(s)	19, 76, 344
SfcI	CTRYAG	2 cut(s)	9, 238
SinI	GGWCC	2 cut(s)	142, 247
Sse9I	AATT	1 cut(s)	112
SsiI	CCGC	1 cut(s)	277
SspMI	CTAG	1 cut(s)	332
StyI	CCWWGG	1 cut(s)	200
TaqI	TCGA	1 cut(s)	341
TasI	AATT	1 cut(s)	112
Tru1I	TTAA	2 cut(s)	210, 321
Tru9I	TTAA	2 cut(s)	210, 321
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	4 cut(s)	162, 168, 269, 273
Van91I	CCANNNNNTGG	1 cut(s)	82
VpaK11BI	GGWCC	2 cut(s)	142, 247
XapI	RAATTY	1 cut(s)	112
XceI	RCATGY	1 cut(s)	41
XspI	CTAG	1 cut(s)	332
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.