pycom17g06160

component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
4344376 .. 4347622
3247 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g06160.8

Sequence Viewer

Length: 1233 bp
ATGACGACTGTGGTGCCAACCTCCGAGGAAGATCCCGCTCTCGCCGTCGTCCGATTCACCTCCGAGCTCGCCTGGGCCGACGCCGGCCACGAGGTTGCTGAGCCGCAAGTTACTAGACTATGTGCTGAAGCCCAAGATTGCGTGGTAATGGACAGGTGGTTCGATTTGGTGTCCCTTATGCTTACTTCGGCTGAGGTCATATTGTCAAAGGTCTCGGAAAAAGATCTTGAGTGCATATTCACTGTTATCTGCAATGTTGTTACAAAGTCTGAAAGTCCAGATGAAGCACTGGAGATGGCAAAACTTATATCCTCAAAGATTACTCAAAAACCAACTGACAAGCCTGCATTGCGCTTAAAGATTTTGTTCAATCTGTACAACCTACTGGAGAACCCATATAGCCGGTTCTTAGTCTACTTGAGTGCTCTTAATTTGGCTATCCATGGGAAGGTCACTGAACATGTCATCCCTTCATTCAAAAATGTGGAAAGTTTTTTGAAAGAGTGGAATATTGAGATCTCTGATCAGAGGCAGTTATTTCTGACAATCGCTAATGTTCTGAAAGAACACAAAAACTTGGCAAAGGAGTCTTTCAAATTCCTGACCAAGTACTTGGCGACATTTTCTGGTGAAGATGTGCATACGTTGAGTGAAGCCAAAGAGGAAGCTATACGTACAATTGTGGAATTTGTGAAGGCCCCAGACATGTTTCAGTGTGATTTGCTAAATTTGCCTGCTGTAGAGCAACTGGAGAAGGATGCTAAGCATGCATTGGCATATCAGCTTTTGAAGATCTTTCTGACTCAGAGGCTGGATGCTTACTTGGAGTTTCAGGCTGCAAATTCTGATTTACTGAAAAGCTACGGTCTTGTCCATGAAGACTGCATAACTAAGATGAGGTTGATTTCCTTGATGGATCTTGGTTCTGATGAATCTGGACGGATTCCTTACGGTGCTATCAGGGATACTCTTCAGATTAATGATGACGAAGTTGAACTTTGGGTGGTAAAGGCAATAACTGCTAAGTTGATGGACTGTAAAATGGACCAGATGAATCAAGTGGTGATTGTGAGCCGCTGTACTGAGAGAGTATTTGGGGAAGAACAATGGCTTACACTAAGAACAAAGTTAGCAACTTGGAGGGGTAATATTGCAAACGTTATCAGCACCATTCGAGCTAACAGGATAGCTGATGATGGATCACAGGCAGTGCAAGGCTTAGTTATTCGTTAG

Protein Analysis

411

Amino Acids

46.37

Weight (kDa)

5.13

Isoelectric Point (pI)

30.47

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 13
AccBSI CCGCTC 1 cut(s) 38
AccI GTMKAC 1 cut(s) 414
AciI CCGC 3 cut(s) 36, 104, 1075
AclI AACGTT 1 cut(s) 1158
AclWI GGATC 3 cut(s) 26, 924, 1207
AcoI YGGCCR 1 cut(s) 85
AcsI RAATTY 4 cut(s) 596, 686, 727, 841
AcuI CTGAAG 2 cut(s) 147, 956
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 4 cut(s) 377, 611, 676, 1081
AfiI CCNNNNNNNGG 1 cut(s) 448
AflIII ACRYGT 2 cut(s) 460, 705
AgsI TTSAA 6 cut(s) 370, 478, 499, 595, 790, 995
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 4 cut(s) 143, 175, 450, 482
AluBI AGCT 6 cut(s) 67, 668, 784, 861, 1178, 1190
AluI AGCT 6 cut(s) 67, 668, 784, 861, 1178, 1190
Alw21I GWGCWC 2 cut(s) 69, 427
Alw26I GTCTC 1 cut(s) 217
AlwI GGATC 3 cut(s) 26, 924, 1207
AlwNI CAGNNNCTG 1 cut(s) 811
AoxI GGCC 3 cut(s) 75, 85, 696
ApeKI GCWGC 1 cut(s) 836
ApoI RAATTY 4 cut(s) 596, 686, 727, 841
ArsI GACNNNNNNTTYG 2 cut(s) 143, 175
AseI ATTAAT 1 cut(s) 978
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 75, 697, 1045
AsuHPI GGTGA 3 cut(s) 49, 641, 1075
AvaII GGWCC 1 cut(s) 1045
BanI GGYRCC 1 cut(s) 13
BanII GRGCYC 1 cut(s) 69
BauI CACGAG 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 885
Bbv12I GWGCWC 2 cut(s) 69, 427
BbvCI CCTCAGC 1 cut(s) 192
BbvI GCAGC 1 cut(s) 823
BccI CCATC 4 cut(s) 289, 907, 1024, 1190
BceAI ACGGC 1 cut(s) 29
BcgI CGANNNNNNTGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 73
BciVI GTATCC 1 cut(s) 958
BclI TGATCA 1 cut(s) 523
BcoDI GTCTC 1 cut(s) 217
BfaI CTAG 1 cut(s) 114
BfmI CTRYAG 1 cut(s) 738
BfuI GTATCC 1 cut(s) 958
BglII AGATCT 3 cut(s) 223, 516, 792
BisI GCNGC 3 cut(s) 104, 837, 1075
BlpI GCTNAGC 2 cut(s) 99, 762
BlsI GCNGC 3 cut(s) 105, 838, 1076
BmcAI AGTACT 1 cut(s) 611
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 1045
BmgT120I GGNCC 3 cut(s) 75, 697, 1045
BmiI GGNNCC 2 cut(s) 15, 699
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 748, 805
BpiI GAAGAC 1 cut(s) 885
BpmI CTGGAG 3 cut(s) 311, 407, 770
Bpu10I CCTNAGC 1 cut(s) 192
Bpu1102I GCTNAGC 2 cut(s) 99, 762
BpuEI CTTGAG 2 cut(s) 248, 439
BsaAI YACGTR 1 cut(s) 674
BsaHI GRCGYC 1 cut(s) 81
BsaI GGTCTC 1 cut(s) 217
BsaJI CCNNGG 3 cut(s) 24, 72, 442
Bsc4I CCNNNNNNNGG 1 cut(s) 448
Bse118I RCCGGY 2 cut(s) 83, 402
Bse1I ACTGG 3 cut(s) 294, 390, 753
Bse3DI GCAATG 2 cut(s) 259, 347
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 3 cut(s) 24, 72, 442
BseGI GGATG 3 cut(s) 465, 763, 820
BseLI CCNNNNNNNGG 1 cut(s) 448
BseMI GCAATG 2 cut(s) 259, 347
BseMII CTCAG 4 cut(s) 90, 183, 818, 1074
BseNI ACTGG 3 cut(s) 294, 390, 753
BseXI GCAGC 1 cut(s) 823
BshFI GGCC 3 cut(s) 77, 87, 698
BshNI GGYRCC 1 cut(s) 13
BsiHKAI GWGCWC 2 cut(s) 69, 427
BsiSI CCGG 2 cut(s) 84, 403
BslFI GGGAC 1 cut(s) 157
BslI CCNNNNNNNGG 1 cut(s) 448
BsmAI GTCTC 1 cut(s) 217
BsmFI GGGAC 1 cut(s) 157
BsnI GGCC 3 cut(s) 77, 87, 698
Bso31I GGTCTC 1 cut(s) 217
Bsp1286I GDGCHC 2 cut(s) 69, 427
Bsp1407I TGTACA 1 cut(s) 375
Bsp143I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
Bsp1720I GCTNAGC 2 cut(s) 99, 762
Bsp19I CCATGG 1 cut(s) 442
BspACI CCGC 3 cut(s) 36, 104, 1075
BspANI GGCC 3 cut(s) 77, 87, 698
BspCNI CTCAG 4 cut(s) 91, 184, 817, 1075
BspLI GGNNCC 2 cut(s) 15, 699
BspPI GGATC 3 cut(s) 26, 924, 1207
BspT107I GGYRCC 1 cut(s) 13
BspTNI GGTCTC 1 cut(s) 217
BsrBI CCGCTC 1 cut(s) 38
BsrDI GCAATG 2 cut(s) 259, 347
BsrFI RCCGGY 2 cut(s) 83, 402
BsrGI TGTACA 1 cut(s) 375
BsrI ACTGG 3 cut(s) 294, 390, 753
BssAI RCCGGY 2 cut(s) 83, 402
BssECI CCNNGG 3 cut(s) 24, 72, 442
BssMI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 89
BssT1I CCWWGG 1 cut(s) 442
Bst2BI CACGAG 1 cut(s) 89
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 5 cut(s) 10, 244, 866, 953, 1037
Bst6I CTCTTC 1 cut(s) 975
BstACI GRCGYC 1 cut(s) 81
BstAPI GCANNNNNTGC 1 cut(s) 1019
BstAUI TGTACA 1 cut(s) 375
BstBAI YACGTR 1 cut(s) 674
BstC8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
BstDSI CCRYGG 1 cut(s) 442
BstF5I GGATG 3 cut(s) 465, 763, 820
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 7 cut(s) 34, 226, 519, 526, 795, 919, 1202
BstMAI GTCTC 1 cut(s) 217
BstMBI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
BstMWI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 3 cut(s) 464, 709, 770
BstSCI CCNGG 1 cut(s) 71
BstSFI CTRYAG 1 cut(s) 738
BstSNI TACGTA 1 cut(s) 674
BstV1I GCAGC 1 cut(s) 823
BstV2I GAAGAC 1 cut(s) 885
BstX2I RGATCY 5 cut(s) 31, 223, 516, 792, 916
BstXI CCANNNNNNTGG 1 cut(s) 613
BstYI RGATCY 5 cut(s) 31, 223, 516, 792, 916
BsuI GTATCC 1 cut(s) 958
BsuRI GGCC 3 cut(s) 77, 87, 698
BtgI CCRYGG 1 cut(s) 442
BtsCI GGATG 3 cut(s) 465, 763, 820
BtsI GCAGTG 1 cut(s) 1215
BtsIMutI CAGTG 5 cut(s) 240, 287, 453, 719, 1215
Cac8I GCNNGC 5 cut(s) 69, 85, 345, 735, 768
CaiI CAGNNNCTG 1 cut(s) 811
CfoI GCGC 1 cut(s) 354
Cfr10I RCCGGY 2 cut(s) 83, 402
Cfr13I GGNCC 3 cut(s) 75, 697, 1045
CseI GACGC 1 cut(s) 89
Csp6I GTAC 4 cut(s) 376, 610, 675, 1080
CviAII CATG 5 cut(s) 443, 461, 706, 767, 875
CviQI GTAC 4 cut(s) 376, 610, 675, 1080
DpnI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1201
DpnII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
EaeI YGGCCR 1 cut(s) 85
Eam1104I CTCTTC 1 cut(s) 975
EarI CTCTTC 1 cut(s) 975
Ecl136II GAGCTC 1 cut(s) 67
Eco105I TACGTA 1 cut(s) 674
Eco130I CCWWGG 1 cut(s) 442
Eco24I GRGCYC 1 cut(s) 69
Eco31I GGTCTC 1 cut(s) 217
Eco47I GGWCC 1 cut(s) 1045
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 147, 956
EcoICRI GAGCTC 1 cut(s) 67
EcoO109I RGGNCCY 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 71
EcoT14I CCWWGG 1 cut(s) 442
EcoT22I ATGCAT 1 cut(s) 772
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 5 cut(s) 446, 464, 709, 770, 878
FalI AAGNNNNNCTT 2 cut(s) 981, 1013
FaqI GGGAC 1 cut(s) 157
FatI CATG 5 cut(s) 442, 460, 705, 766, 874
FauI CCCGC 1 cut(s) 43
FbaI TGATCA 1 cut(s) 523
FblI GTMKAC 1 cut(s) 414
Fnu4HI GCNGC 3 cut(s) 104, 837, 1075
FokI GGATG 3 cut(s) 452, 770, 827
FriOI GRGCYC 1 cut(s) 69
Fsp4HI GCNGC 3 cut(s) 104, 837, 1075
FspBI CTAG 1 cut(s) 114
GlaI GCGC 1 cut(s) 353
GluI GCNGC 3 cut(s) 104, 837, 1075
GsuI CTGGAG 3 cut(s) 311, 407, 770
HaeIII GGCC 3 cut(s) 77, 87, 698
HapII CCGG 2 cut(s) 84, 403
HgaI GACGC 1 cut(s) 89
HhaI GCGC 1 cut(s) 354
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 5 cut(s) 446, 464, 709, 770, 878
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HinfI GANTC 6 cut(s) 54, 587, 802, 932, 943, 1054
HpaII CCGG 2 cut(s) 84, 403
HphI GGTGA 3 cut(s) 49, 641, 1075
Hpy166II GTNNAC 1 cut(s) 415
Hpy188III TCNNGA 4 cut(s) 227, 278, 601, 936
Hpy8I GTNNAC 1 cut(s) 415
Hpy99I CGWCG 2 cut(s) 50, 83
HpyAV CCTTC 4 cut(s) 442, 480, 688, 748
HpyCH4III ACNGT 5 cut(s) 10, 244, 866, 953, 1037
HpyCH4IV ACGT 3 cut(s) 644, 673, 1158
HpyCH4V TGCA 9 cut(s) 234, 252, 347, 640, 770, 839, 885, 1154, 1213
HpyF10VI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
HpySE526I ACGT 3 cut(s) 644, 673, 1158
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 5 cut(s) 446, 464, 709, 770, 878
HspAI GCGC 1 cut(s) 352
KroI GCCGGC 1 cut(s) 83
KroNI GCCGGC 1 cut(s) 85
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
Lsp1109I GCAGC 1 cut(s) 823
LweI GCATC 2 cut(s) 748, 805
MaeI CTAG 1 cut(s) 114
MaeII ACGT 3 cut(s) 644, 673, 1158
MaeIII GTNAC 3 cut(s) 109, 259, 451
MalI GATC 7 cut(s) 33, 225, 518, 525, 794, 918, 1201
MbiI CCGCTC 1 cut(s) 38
MboI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
MboII GAAGA 6 cut(s) 41, 644, 802, 890, 962, 1112
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 5 cut(s) 31, 223, 516, 792, 916
MhlI GDGCHC 2 cut(s) 69, 427
MluCI AATT 6 cut(s) 430, 596, 678, 686, 727, 841
MlyI GAGTC 2 cut(s) 596, 796
Mph1103I ATGCAT 1 cut(s) 772
MroNI GCCGGC 1 cut(s) 83
MseI TTAA 3 cut(s) 356, 429, 978
MspA1I CMGCKG 1 cut(s) 1077
MspI CCGG 2 cut(s) 84, 403
MspR9I CCNGG 1 cut(s) 73
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 1 cut(s) 73
MwoI GCNNNNNNNGC 4 cut(s) 349, 730, 767, 1019
NaeI GCCGGC 1 cut(s) 85
NcoI CCATGG 1 cut(s) 442
NdeII GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
NgoMIV GCCGGC 1 cut(s) 83
NlaIII CATG 5 cut(s) 446, 464, 709, 770, 878
NlaIV GGNNCC 2 cut(s) 15, 699
NmuCI GTSAC 1 cut(s) 451
NsiI ATGCAT 1 cut(s) 772
NspI RCATGY 3 cut(s) 464, 709, 770
PaeI GCATGC 1 cut(s) 770
PciI ACATGT 2 cut(s) 460, 705
PcsI WCGNNNNNNNCGW 2 cut(s) 75, 87
PdiI GCCGGC 1 cut(s) 85
PfeI GAWTC 4 cut(s) 54, 932, 943, 1054
PkrI GCNGC 3 cut(s) 105, 838, 1076
PleI GAGTC 2 cut(s) 595, 796
PpsI GAGTC 2 cut(s) 595, 796
Ppu21I YACGTR 1 cut(s) 674
PscI ACATGT 2 cut(s) 460, 705
PshBI ATTAAT 1 cut(s) 978
Psp124BI GAGCTC 1 cut(s) 69
Psp1406I AACGTT 1 cut(s) 1158
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 2 cut(s) 15, 699
PspPI GGNCC 3 cut(s) 75, 697, 1045
PstNI CAGNNNCTG 1 cut(s) 811
PsuI RGATCY 5 cut(s) 31, 223, 516, 792, 916
RsaI GTAC 4 cut(s) 377, 611, 676, 1081
RsaNI GTAC 4 cut(s) 376, 610, 675, 1080
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 3 cut(s) 356, 429, 978
SatI GCNGC 3 cut(s) 104, 837, 1075
Sau3AI GATC 7 cut(s) 31, 223, 516, 523, 792, 916, 1199
Sau96I GGNCC 3 cut(s) 75, 697, 1045
ScaI AGTACT 1 cut(s) 611
SchI GAGTC 2 cut(s) 596, 796
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 69, 427
SfaNI GCATC 2 cut(s) 748, 805
SfcI CTRYAG 1 cut(s) 738
SinI GGWCC 1 cut(s) 1045
SmlI CTYRAG 2 cut(s) 227, 418
SmoI CTYRAG 2 cut(s) 227, 418
SnaBI TACGTA 1 cut(s) 674
SphI GCATGC 1 cut(s) 770
Sse9I AATT 6 cut(s) 430, 596, 678, 686, 727, 841
SsiI CCGC 3 cut(s) 36, 104, 1075
SspI AATATT 2 cut(s) 511, 1150
SspMI CTAG 1 cut(s) 114
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 1 cut(s) 71
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 5 cut(s) 10, 244, 866, 953, 1037
TaiI ACGT 3 cut(s) 647, 676, 1161
TaqI TCGA 2 cut(s) 162, 1174
TasI AATT 6 cut(s) 430, 596, 678, 686, 727, 841
TatI WGTACW 3 cut(s) 375, 609, 1079
TauI GCSGC 2 cut(s) 106, 1077
TfiI GAWTC 4 cut(s) 54, 932, 943, 1054
Tru1I TTAA 3 cut(s) 356, 429, 978
Tru9I TTAA 3 cut(s) 356, 429, 978
TscAI CASTG 5 cut(s) 247, 294, 460, 719, 1215
TseFI GTSAC 1 cut(s) 451
TseI GCWGC 1 cut(s) 836
Tsp45I GTSAC 1 cut(s) 451
TspDTI ATGAA 5 cut(s) 297, 462, 891, 945, 1067
TspGWI ACGGA 1 cut(s) 955
TspRI CASTG 5 cut(s) 247, 294, 460, 719, 1215
VpaK11BI GGWCC 1 cut(s) 1045
VspI ATTAAT 1 cut(s) 978
XapI RAATTY 4 cut(s) 596, 686, 727, 841
XceI RCATGY 3 cut(s) 464, 709, 770
XmiI GTMKAC 1 cut(s) 414
XspI CTAG 1 cut(s) 114
ZrmI AGTACT 1 cut(s) 611
Zsp2I ATGCAT 1 cut(s) 772
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.