Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002507

Physical Location & Seq

Genomic Coordinates Forward (+)

5079458 .. 5082288

Gene Structure 2831 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G15610.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGACGACGATTGTTCCCACCTCCGAAGAAGATCCTTACCTCGCCATTGTTCGTTTCACTTCCCAGCTTGCCTGGGCTGATGCTGGTCCCGAGGTCGCAGAGCCTGAAGTTTCCAGGCTATGTAAGGAAGCAGAGGAGTCTATAATAAATGGGAAGTGGCTGGATTTGGCAACGTTGATGGTAACTTCAGCTGACTTGGTATCAGCCAAAATCTCTGAGAAAGATCTTGAGTGTACCTACACCATCATTTGCAACCTTGTCAAGAATGCGAACAGTCCTGAGGAAGTCCTTGAAATGGTGAAAGCTATAGCTGCTAAGGTTATTCAACAACCAAACGACAAAGCTTCATTGCGTTTGAAGATCCTCTTCAATCTATATAATCTGGTAGACCACCCAAATGCTCGTTTTCAAGTATACATGAAAGCTCTGGAACTGGCTGTAAACGGGAAGGTTACCGAGTATATTGTACCTTCCTTTAAGAAGATTGACAGCTTCTTGAAAGAGTGGAACATTGACATCAAAGATCAGCGGGAACTATTTCTTGCTATTGCTAAAGTGCTTAGAGAAAATAAAAGTTTTGCGAAAGAATCCCTCCAGTTTGTGACAAATTATTTGGCAACTTTCTCCAATGAAGATACCCAAGTCCTGAGTGAAGCCAAGGAGGAAGCTGTACGAGCAGTTATTGAATTTGTCAAGGCTCCCAGTATATTTCAGTGTGATTTATTAGACCATCCAGCTGTCGCACAGTTGGAGAAGGATCCTAACAATGCACCAGTTTACCAGCTACTGAAGATTTTTCTTACTCAGAGGCTAGATGCATACATGGAATTCCAAAATGCGAATTCAGGATTTCTGCAAACATACGGACTTGTCGAGGAAGACTGTGTAGCAAAGATGAGGTTGTTGTCCCTAGTTGATTTGGCCTCAGATGATTCTGGCAAAATACCGTATGCCTCGATCAAGAACACCCTACAGGTAAATGACGAGGAGGTTGAATTGTGGGTGGTTAAGGCAATAACTGCAAAATTGGTTGCTTGTAAGATGGATCAGATGAACCAAGTTGTAATTGTCAGGCAAGTTTCTAATCTACTTCTATTTCGATTTATATGTGTAAATCCAAAGTCACACATTCTCGTACTTCATATCTGTTCATGTATCAGCCGCTGTGCCGAGCGTGAATTTGGACAAAAGCAATGGCAGTCTCTTCGAACAAAGCTAGCAGCTTGGCGGGACAATGTTAGGAATGTAATCAGCACGATCGAATCGAATAAGGCAACAGAGGAAGGTACTCAGACATCATCAGCAGCTCAGGGATTGACTGTCCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002181 GO:0002183 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005852 GO:0006412 GO:0006413 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0019538 GO:0032991 GO:0034641 GO:0034645 GO:0043043 GO:0043170 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PCI

Protein Analysis

442

Amino Acids

49.77

Weight (kDa)

5.29

Isoelectric Point (pI)

38.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PCI	PF01399	283 - 359	9.1e-14	PCI domain
eIF3m_C_helix	PF18005	363 - 391	5e-12	eIF3 subunit M, C-terminal helix

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002507)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02200 AT3G02200 AT5G15610 AT5G15610
fragaria_vesca	FvH4_6g46660 FvH4_6g46660
malus_domestica	MD09G1068800.v1.1 MD17G1061800.v1.1 MD17G1062000.v1.1
prunus_persica	Prupe.3G252000_v2.0.a1
pyrus_communis	pycom12433g00080 pycom17g06160 pycom17g06340 pycom17g06360
rosa_chinensis	RchiOBHm_Chr2g0157101 RchiOBHm_Chr2g0165441 RchiOBHm_Chr2g0165551
rosa_laevigata	RLG00000021531 RLG00000021538 RLG00000037000
rosa_multiflora	Rmu_sc0004031.1_g000019 Rmu_sc0005425.1_g000018 Rmu_sc0016601.1_g000007 Rmu_sc0038644.1_g000002
rosa_roxburghii	Rroxscaffold_2G00085730 Rroxscaffold_2G00085750 Rroxscaffold_6G00392200
rosa_rugosa	Rorug02G0515200 Rorug05G0483100
rosa_samantha	Rh2AG582000 Rh2BG594200 Rh2CG564100 Rh2DG604100 Rh5AG531100 Rh5DG568600 Rh5DG568700
rosa_wichuraiana	Rw2G003840 Rw2G048390 Rw2G048480 Rw2G048540 Rw5G028000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	387, 414
AciI	CCGC	3 cut(s)	529, 1162, 1228
AclI	AACGTT	1 cut(s)	173
AclWI	GGATC	5 cut(s)	26, 355, 752, 765, 1053
AcsI	RAATTY	4 cut(s)	686, 827, 841, 1178
AcuI	CTGAAG	3 cut(s)	126, 171, 809
AfaI	GTAC	5 cut(s)	235, 468, 672, 1137, 1288
AfiI	CCNNNNNNNGG	1 cut(s)	295
AgsI	TTSAA	8 cut(s)	293, 326, 358, 370, 410, 499, 686, 995
AjnI	CCWGG	2 cut(s)	71, 113
Alw26I	GTCTC	1 cut(s)	1206
AlwI	GGATC	5 cut(s)	26, 355, 752, 765, 1053
AlwNI	CAGNNNCTG	3 cut(s)	104, 787, 1164
Ama87I	CYCGRG	1 cut(s)	89
AoxI	GGCC	1 cut(s)	921
ApeKI	GCWGC	3 cut(s)	311, 1220, 1304
ApoI	RAATTY	4 cut(s)	686, 827, 841, 1178
ArsI	GACNNNNNNTTYG	2 cut(s)	595, 627
Asp700I	GAANNNNTTC	1 cut(s)	537
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	310
AsuII	TTCGAA	1 cut(s)	1207
AsuNHI	GCTAGC	1 cut(s)	1216
AvaI	CYCGRG	1 cut(s)	89
AvaII	GGWCC	1 cut(s)	86
AxyI	CCTNAGG	1 cut(s)	279
BaeI	ACNNNNGTAYC	2 cut(s)	627, 660
BamHI	GGATCC	1 cut(s)	757
BbsI	GAAGAC	1 cut(s)	885
BbvI	GCAGC	3 cut(s)	298, 1232, 1316
BccI	CCATC	4 cut(s)	172, 251, 738, 1036
BcgI	CGANNNNNNTGC	2 cut(s)	1187, 1221
BciT130I	CCWGG	2 cut(s)	73, 115
BcoDI	GTCTC	1 cut(s)	1206
BfaI	CTAG	3 cut(s)	812, 911, 1217
BfmI	CTRYAG	2 cut(s)	306, 971
BglII	AGATCT	1 cut(s)	223
BisI	GCNGC	4 cut(s)	312, 1162, 1221, 1305
BlsI	GCNGC	4 cut(s)	313, 1163, 1222, 1306
Bme1390I	CCNGG	2 cut(s)	73, 115
Bme18I	GGWCC	1 cut(s)	86
BmeT110I	CYCGRG	1 cut(s)	89
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	3 cut(s)	88, 699, 759
BmrFI	CCNGG	2 cut(s)	73, 115
BmrI	ACTGGG	1 cut(s)	696
BmsI	GCATC	2 cut(s)	70, 805
BmtI	GCTAGC	1 cut(s)	1220
BmuI	ACTGGG	1 cut(s)	696
BpiI	GAAGAC	1 cut(s)	885
BpmI	CTGGAG	1 cut(s)	578
Bpu10I	CCTNAGC	2 cut(s)	315, 1308
Bpu14I	TTCGAA	1 cut(s)	1207
BpuEI	CTTGAG	1 cut(s)	248
BsaJI	CCNNGG	3 cut(s)	72, 90, 657
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse1I	ACTGG	4 cut(s)	438, 595, 702, 773
Bse21I	CCTNAGG	1 cut(s)	279
Bse3DI	GCAATG	2 cut(s)	347, 1199
BseBI	CCWGG	2 cut(s)	73, 115
BseDI	CCNNGG	3 cut(s)	72, 90, 657
BseGI	GGATG	1 cut(s)	730
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMI	GCAATG	2 cut(s)	347, 1199
BseMII	CTCAG	7 cut(s)	207, 270, 638, 818, 939, 1304, 1322
BseNI	ACTGG	4 cut(s)	438, 595, 702, 773
BseRI	GAGGAG	2 cut(s)	149, 1001
BseXI	GCAGC	3 cut(s)	298, 1232, 1316
BseYI	CCCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	1 cut(s)	1260
BshFI	GGCC	1 cut(s)	923
BsiEI	CGRYCG	1 cut(s)	1260
BsiHKCI	CYCGRG	1 cut(s)	89
BslFI	GGGAC	3 cut(s)	72, 892, 1244
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	1206
BsmFI	GGGAC	3 cut(s)	72, 892, 1244
BsmI	GAATGC	1 cut(s)	271
BsnI	GGCC	1 cut(s)	923
BsoBI	CYCGRG	1 cut(s)	89
Bsp119I	TTCGAA	1 cut(s)	1207
Bsp143I	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
BspACI	CCGC	3 cut(s)	529, 1162, 1228
BspANI	GGCC	1 cut(s)	923
BspCNI	CTCAG	7 cut(s)	208, 271, 639, 817, 938, 1303, 1321
BspLI	GGNNCC	3 cut(s)	88, 699, 759
BspOI	GCTAGC	1 cut(s)	1220
BspPI	GGATC	5 cut(s)	26, 355, 752, 765, 1053
BspT104I	TTCGAA	1 cut(s)	1207
BsrDI	GCAATG	2 cut(s)	347, 1199
BsrI	ACTGG	4 cut(s)	438, 595, 702, 773
BssECI	CCNNGG	3 cut(s)	72, 90, 657
BssMI	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
BssNAI	GTATAC	1 cut(s)	415
BssT1I	CCWWGG	1 cut(s)	657
Bst1107I	GTATAC	1 cut(s)	415
Bst2UI	CCWGG	2 cut(s)	73, 115
Bst4CI	ACNGT	5 cut(s)	275, 747, 884, 948, 1321
Bst6I	CTCTTC	2 cut(s)	371, 1209
BstAPI	GCANNNNNTGC	1 cut(s)	1019
BstBI	TTCGAA	1 cut(s)	1207
BstC8I	GCNNGC	2 cut(s)	69, 1218
BstDEI	CTNAG	9 cut(s)	216, 279, 315, 560, 647, 804, 925, 1290, 1308
BstEII	GGTNACC	1 cut(s)	451
BstF5I	GGATG	1 cut(s)	730
BstKTI	GATC	8 cut(s)	34, 226, 363, 526, 760, 960, 1048, 1260
BstMAI	GTCTC	1 cut(s)	1206
BstMBI	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
BstMCI	CGRYCG	1 cut(s)	1260
BstMWI	GCNNNNNNNGC	3 cut(s)	311, 674, 1019
BstNI	CCWGG	2 cut(s)	73, 115
BstPI	GGTNACC	1 cut(s)	451
BstSCI	CCNGG	2 cut(s)	71, 113
BstSFI	CTRYAG	2 cut(s)	306, 971
BstV1I	GCAGC	3 cut(s)	298, 1232, 1316
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	4 cut(s)	31, 223, 360, 757
BstYI	RGATCY	4 cut(s)	31, 223, 360, 757
BstZ17I	GTATAC	1 cut(s)	415
Bsu36I	CCTNAGG	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	923
BtsCI	GGATG	1 cut(s)	730
BtsIMutI	CAGTG	1 cut(s)	719
Cac8I	GCNNGC	2 cut(s)	69, 1218
CaiI	CAGNNNCTG	3 cut(s)	104, 787, 1164
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	5 cut(s)	234, 467, 671, 1136, 1287
CviAII	CATG	3 cut(s)	418, 823, 1152
CviQI	GTAC	5 cut(s)	234, 467, 671, 1136, 1287
DdeI	CTNAG	9 cut(s)	216, 279, 315, 560, 647, 804, 925, 1290, 1308
DpnI	GATC	8 cut(s)	33, 225, 362, 525, 759, 959, 1047, 1259
DpnII	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
Eam1104I	CTCTTC	2 cut(s)	371, 1209
EarI	CTCTTC	2 cut(s)	371, 1209
Eco130I	CCWWGG	1 cut(s)	657
Eco47I	GGWCC	1 cut(s)	86
Eco57I	CTGAAG	3 cut(s)	126, 171, 809
Eco81I	CCTNAGG	1 cut(s)	279
Eco88I	CYCGRG	1 cut(s)	89
Eco91I	GGTNACC	1 cut(s)	451
EcoO65I	GGTNACC	1 cut(s)	451
EcoRI	GAATTC	2 cut(s)	827, 841
EcoRII	CCWGG	2 cut(s)	71, 113
EcoT14I	CCWWGG	1 cut(s)	657
EcoT22I	ATGCAT	1 cut(s)	820
ErhI	CCWWGG	1 cut(s)	657
FaeI	CATG	3 cut(s)	421, 826, 1155
FalI	AAGNNNNNCTT	2 cut(s)	350, 382
FaqI	GGGAC	3 cut(s)	72, 892, 1244
FatI	CATG	3 cut(s)	417, 822, 1151
FauI	CCCGC	2 cut(s)	522, 1221
FblI	GTMKAC	2 cut(s)	387, 414
Fnu4HI	GCNGC	4 cut(s)	312, 1162, 1221, 1305
FokI	GGATG	1 cut(s)	717
Fsp4HI	GCNGC	4 cut(s)	312, 1162, 1221, 1305
FspBI	CTAG	3 cut(s)	812, 911, 1217
GluI	GCNGC	4 cut(s)	312, 1162, 1221, 1305
GsaI	CCCAGC	1 cut(s)	67
GsuI	CTGGAG	1 cut(s)	578
HaeIII	GGCC	1 cut(s)	923
Hin1II	CATG	3 cut(s)	421, 826, 1155
HindIII	AAGCTT	1 cut(s)	342
HinfI	GANTC	4 cut(s)	137, 587, 932, 1262
HphI	GGTGA	1 cut(s)	310
Hpy166II	GTNNAC	5 cut(s)	234, 388, 415, 442, 778
Hpy188I	TCNGA	6 cut(s)	25, 217, 807, 928, 1050, 1293
Hpy188III	TCNNGA	9 cut(s)	89, 227, 262, 278, 428, 496, 646, 846, 961
Hpy8I	GTNNAC	5 cut(s)	234, 388, 415, 442, 778
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	4 cut(s)	442, 480, 748, 1277
HpyCH4III	ACNGT	5 cut(s)	275, 747, 884, 948, 1321
HpyCH4IV	ACGT	1 cut(s)	173
HpyCH4V	TGCA	5 cut(s)	252, 770, 818, 856, 1022
HpyF10VI	GCNNNNNNNGC	3 cut(s)	311, 674, 1019
HpyF3I	CTNAG	9 cut(s)	216, 279, 315, 560, 647, 804, 925, 1290, 1308
HpySE526I	ACGT	1 cut(s)	173
Hsp92II	CATG	3 cut(s)	421, 826, 1155
Kzo9I	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	3 cut(s)	298, 1232, 1316
LweI	GCATC	2 cut(s)	70, 805
MaeI	CTAG	3 cut(s)	812, 911, 1217
MaeII	ACGT	1 cut(s)	173
MaeIII	GTNAC	4 cut(s)	181, 451, 601, 1122
MalI	GATC	8 cut(s)	33, 225, 362, 525, 759, 959, 1047, 1259
MboI	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
MboII	GAAGA	9 cut(s)	38, 41, 358, 370, 493, 644, 802, 890, 1196
MflI	RGATCY	4 cut(s)	31, 223, 360, 757
MluCI	AATT	8 cut(s)	607, 686, 827, 841, 995, 1025, 1065, 1178
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	729
Mph1103I	ATGCAT	1 cut(s)	820
MroXI	GAANNNNTTC	1 cut(s)	537
MseI	TTAA	2 cut(s)	477, 1008
MslI	CAYNNNNRTG	1 cut(s)	396
MspA1I	CMGCKG	4 cut(s)	191, 529, 737, 1164
MspR9I	CCNGG	2 cut(s)	73, 115
Mva1269I	GAATGC	1 cut(s)	271
MvaI	CCWGG	2 cut(s)	73, 115
MwoI	GCNNNNNNNGC	3 cut(s)	311, 674, 1019
NdeII	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
NheI	GCTAGC	1 cut(s)	1216
NlaIII	CATG	3 cut(s)	421, 826, 1155
NlaIV	GGNNCC	3 cut(s)	88, 699, 759
NmeAIII	GCCGAG	1 cut(s)	1195
NmuCI	GTSAC	2 cut(s)	601, 1122
NsiI	ATGCAT	1 cut(s)	820
NspV	TTCGAA	1 cut(s)	1207
PcsI	WCGNNNNNNNCGW	2 cut(s)	870, 1262
PctI	GAATGC	1 cut(s)	271
PdmI	GAANNNNTTC	1 cut(s)	537
PfeI	GAWTC	3 cut(s)	587, 932, 1262
PkrI	GCNGC	4 cut(s)	313, 1163, 1222, 1306
Ple19I	CGATCG	1 cut(s)	1260
PleI	GAGTC	1 cut(s)	145
PpsI	GAGTC	1 cut(s)	145
Psp1406I	AACGTT	1 cut(s)	173
Psp6I	CCWGG	2 cut(s)	71, 113
PspEI	GGTNACC	1 cut(s)	451
PspFI	CCCAGC	1 cut(s)	63
PspGI	CCWGG	2 cut(s)	71, 113
PspN4I	GGNNCC	3 cut(s)	88, 699, 759
PspPI	GGNCC	1 cut(s)	86
PstNI	CAGNNNCTG	3 cut(s)	104, 787, 1164
PsuI	RGATCY	4 cut(s)	31, 223, 360, 757
PvuI	CGATCG	1 cut(s)	1260
PvuII	CAGCTG	2 cut(s)	191, 737
RsaI	GTAC	5 cut(s)	235, 468, 672, 1137, 1288
RsaNI	GTAC	5 cut(s)	234, 467, 671, 1136, 1287
RseI	CAYNNNNRTG	1 cut(s)	396
SaqAI	TTAA	2 cut(s)	477, 1008
SatI	GCNGC	4 cut(s)	312, 1162, 1221, 1305
Sau3AI	GATC	8 cut(s)	31, 223, 360, 523, 757, 957, 1045, 1257
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	2 cut(s)	73, 115
SfaNI	GCATC	2 cut(s)	70, 805
SfcI	CTRYAG	2 cut(s)	306, 971
SfuI	TTCGAA	1 cut(s)	1207
SinI	GGWCC	1 cut(s)	86
SmiMI	CAYNNNNRTG	1 cut(s)	396
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	8 cut(s)	607, 686, 827, 841, 995, 1025, 1065, 1178
SsiI	CCGC	3 cut(s)	529, 1162, 1228
SspMI	CTAG	3 cut(s)	812, 911, 1217
StyD4I	CCNGG	2 cut(s)	71, 113
StyI	CCWWGG	1 cut(s)	657
TaaI	ACNGT	5 cut(s)	275, 747, 884, 948, 1321
TaiI	ACGT	1 cut(s)	176
TaqI	TCGA	6 cut(s)	873, 956, 1099, 1207, 1260, 1265
TasI	AATT	8 cut(s)	607, 686, 827, 841, 995, 1025, 1065, 1178
TauI	GCSGC	1 cut(s)	1164
TfiI	GAWTC	3 cut(s)	587, 932, 1262
Tru1I	TTAA	2 cut(s)	477, 1008
Tru9I	TTAA	2 cut(s)	477, 1008
TscAI	CASTG	1 cut(s)	719
TseFI	GTSAC	2 cut(s)	601, 1122
TseI	GCWGC	3 cut(s)	311, 1220, 1304
Tsp45I	GTSAC	2 cut(s)	601, 1122
TspDTI	ATGAA	6 cut(s)	336, 434, 645, 1067, 1130, 1140
TspGWI	ACGGA	2 cut(s)	879, 1313
TspRI	CASTG	1 cut(s)	719
VpaK11BI	GGWCC	1 cut(s)	86
XapI	RAATTY	4 cut(s)	686, 827, 841, 1178
XmiI	GTMKAC	2 cut(s)	387, 414
XmnI	GAANNNNTTC	1 cut(s)	537
XspI	CTAG	3 cut(s)	812, 911, 1217
Zsp2I	ATGCAT	1 cut(s)	820

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.