Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Forward (+)

2983860 .. 2986594

Gene Structure 2735 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G09730.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTGGCAAGTTATTCTAGGAGCAGCCATTGCTGGATCCACTGGTTTTGTAGCCAAACGCTTATTCAACCCTTTCTCTCGAGATTCTCCTACTCCCGAGAATTACGCTGAAGAGCAGGAACCAGTCACTCCTCCTGTGAGCATTGGATTTCTCGATTCTCCTTGCGACAAAACCAATGGCGTTTTCCGATTTTCTAGTTCCGGGTCTACCGTTAACTCAGGATCAGGATCCGGGTCTTCTCCTGGGTTTAGGAAGAGTTCAGGGGTGAAATGTAGAGTTAGGGTTCGTGGATTGATGAAGAAGAAGAAGAAAAAGAATAGTGGGGGATGTGAGATCGAGAAGCGATCTGGAAATGTTGGTGCTTTTGAAATGAAGAGTGAGGTTTGCTCGAAAAAGACGAAAACTTTGGGTGCTGCTTCTGCTTCAAAACATCATTCCTCTTTCAGCTCAGCACTGGGTGTCTGCATGATGTATATGATGTCAGCAGAGAAAGGTGAAATCAGTAAGCTGCATGCAGCAACAGAAGAAACTACCAAAGTCATCCAAGAGCTAAAAGATGAACTCTCTAGGATTAAATCTTTACAGGGTTTCAAGTTTCGTGGCTGTGCAGCAAGTTCTGAGAAATCTGGCCAGATAGATCTCAATAGATCAGAGATGGTGAGTAGAGTATCTCTCGATATCAAGTCAGGCAATGATGGAGAATATGCTAGCAGCGTCCTAACTGAGGAGCCAGAACAAGAGGCAGTAGAAATGGAACAATTAGAGATGGAACTTGAATCTGAGCTGCAGAAATTGAACTTGGCTGAGACAAGTGATGTTATGGAGGAATGTAAGGATTTGGTTAATGGAGCTGAGTCATACCAATGTGGTGGAATATCGGCATCAGAGCTGGACAAGAAACTAAGCCACCTTCTCATCGAACAACAAGAAGGACAGATCAATGAGCTTGAAGCTGAACTACAAACTACTCAGTCCAAACTCCAAGAGAAGGAAGCTGAGCTTCAAGCACTTAAGGTCTGCGTTAGACGCCTAACAGAGTTTCCTCTCTTGGACCGTTCAGATGATGAGCATGAAGAGGACCTGAATCAGGATCTCTCAGTCTCATGGAGCCAACATAACAAAACTGATCACGAGGCAAGAAAGCAGATCATTGGGATGAAAAGGCCTATGGAGTCATCATGTATCCATGTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

43.64

Weight (kDa)

5.45

Isoelectric Point (pI)

57.42

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AclWI	GGATC	6 cut(s)	30, 43, 222, 229, 235, 1098
AcoI	YGGCCR	1 cut(s)	628
AcuI	CTGAAG	1 cut(s)	129
AcyI	GRCGYC	1 cut(s)	1027
AdeI	CACNNNGTG	1 cut(s)	458
AfiI	CCNNNNNNNGG	3 cut(s)	724, 988, 1087
AflII	CTTAAG	1 cut(s)	1010
AgsI	TTSAA	8 cut(s)	67, 368, 426, 592, 776, 796, 950, 1004
AjnI	CCWGG	1 cut(s)	241
AjuI	GAANNNNNNNTTGG	6 cut(s)	47, 79, 167, 199, 782, 814
Alw26I	GTCTC	2 cut(s)	800, 1105
AlwI	GGATC	6 cut(s)	30, 43, 222, 229, 235, 1098
Ama87I	CYCGRG	2 cut(s)	78, 95
AoxI	GGCC	2 cut(s)	628, 1163
ApeKI	GCWGC	7 cut(s)	23, 413, 508, 515, 608, 711, 784
ArsI	GACNNNNNNTTYG	2 cut(s)	388, 420
AspS9I	GGNCC	2 cut(s)	1051, 1078
AsuC2I	CCSGG	2 cut(s)	202, 232
AsuHPI	GGTGA	3 cut(s)	277, 506, 670
AsuNHI	GCTAGC	1 cut(s)	707
AvaI	CYCGRG	2 cut(s)	78, 95
AvaII	GGWCC	2 cut(s)	1051, 1078
BalI	TGGCCA	1 cut(s)	630
BamHI	GGATCC	2 cut(s)	35, 227
BarI	GAAGNNNNNNTAC	2 cut(s)	942, 974
BauI	CACGAG	1 cut(s)	1130
BbsI	GAAGAC	1 cut(s)	228
BbvI	GCAGC	7 cut(s)	35, 400, 495, 527, 620, 723, 771
BccI	CCATC	3 cut(s)	649, 689, 760
BciT130I	CCWGG	1 cut(s)	243
BciVI	GTATCC	1 cut(s)	1193
BclI	TGATCA	1 cut(s)	1126
BcnI	CCSGG	2 cut(s)	202, 232
BcoDI	GTCTC	2 cut(s)	800, 1105
BfaI	CTAG	4 cut(s)	17, 195, 567, 708
BfmI	CTRYAG	1 cut(s)	785
BfrI	CTTAAG	1 cut(s)	1010
BfuI	GTATCC	1 cut(s)	1193
BglII	AGATCT	1 cut(s)	637
BisI	GCNGC	7 cut(s)	24, 414, 509, 516, 609, 712, 785
BlpI	GCTNAGC	2 cut(s)	448, 996
BlsI	GCNGC	7 cut(s)	25, 415, 510, 517, 610, 713, 786
Bme1390I	CCNGG	3 cut(s)	202, 232, 243
Bme18I	GGWCC	2 cut(s)	1051, 1078
BmeT110I	CYCGRG	2 cut(s)	78, 95
BmgT120I	GGNCC	2 cut(s)	1051, 1078
BmiI	GGNNCC	5 cut(s)	37, 120, 229, 729, 1109
BmrFI	CCNGG	3 cut(s)	202, 232, 243
BmrI	ACTGGG	1 cut(s)	464
BmsI	GCATC	1 cut(s)	890
BmtI	GCTAGC	1 cut(s)	711
BmuI	ACTGGG	1 cut(s)	464
BpiI	GAAGAC	1 cut(s)	228
BplI	GAGNNNNNCTC	4 cut(s)	371, 403, 657, 689
Bpu1102I	GCTNAGC	2 cut(s)	448, 996
BpuMI	CCSGG	2 cut(s)	202, 232
BsaBI	GATNNNNATC	1 cut(s)	226
BsaHI	GRCGYC	1 cut(s)	1027
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	3 cut(s)	724, 988, 1087
Bse1I	ACTGG	3 cut(s)	46, 122, 459
Bse3DI	GCAATG	2 cut(s)	27, 697
Bse8I	GATNNNNATC	1 cut(s)	226
BseBI	CCWGG	1 cut(s)	243
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	3 cut(s)	332, 540, 1161
BseJI	GATNNNNATC	1 cut(s)	226
BseLI	CCNNNNNNNGG	3 cut(s)	724, 988, 1087
BseMI	GCAATG	2 cut(s)	27, 697
BseNI	ACTGG	3 cut(s)	46, 122, 459
BseRI	GAGGAG	2 cut(s)	120, 740
BseXI	GCAGC	7 cut(s)	35, 400, 495, 527, 620, 723, 771
BsgI	GTGCAG	1 cut(s)	627
BshFI	GGCC	2 cut(s)	630, 1165
BsiHKCI	CYCGRG	2 cut(s)	78, 95
BsiSI	CCGG	2 cut(s)	201, 231
BslI	CCNNNNNNNGG	3 cut(s)	724, 988, 1087
BsmAI	GTCTC	2 cut(s)	800, 1105
BsnI	GGCC	2 cut(s)	630, 1165
BsoBI	CYCGRG	2 cut(s)	78, 95
Bsp1720I	GCTNAGC	2 cut(s)	448, 996
BspANI	GGCC	2 cut(s)	630, 1165
BspLI	GGNNCC	5 cut(s)	37, 120, 229, 729, 1109
BspMAI	CTGCAG	1 cut(s)	789
BspOI	GCTAGC	1 cut(s)	711
BspPI	GGATC	6 cut(s)	30, 43, 222, 229, 235, 1098
BspQI	GCTCTTC	1 cut(s)	105
BspTI	CTTAAG	1 cut(s)	1010
BsrDI	GCAATG	2 cut(s)	27, 697
BsrI	ACTGG	3 cut(s)	46, 122, 459
BssECI	CCNNGG	1 cut(s)	242
BssNI	GRCGYC	1 cut(s)	1027
BssSI	CACGAG	1 cut(s)	1130
Bst2BI	CACGAG	1 cut(s)	1130
Bst2UI	CCWGG	1 cut(s)	243
Bst4CI	ACNGT	2 cut(s)	211, 1055
Bst6I	CTCTTC	4 cut(s)	105, 248, 368, 1068
BstACI	GRCGYC	1 cut(s)	1027
BstAFI	CTTAAG	1 cut(s)	1010
BstAPI	GCANNNNNTGC	1 cut(s)	29
BstC8I	GCNNGC	2 cut(s)	513, 709
BstENI	CCTNNNNNAGG	2 cut(s)	722, 1085
BstF5I	GGATG	3 cut(s)	332, 540, 1161
BstMAI	GTCTC	2 cut(s)	800, 1105
BstMWI	GCNNNNNNNGC	3 cut(s)	29, 419, 1026
BstNI	CCWGG	1 cut(s)	243
BstNSI	RCATGY	1 cut(s)	515
BstSCI	CCNGG	3 cut(s)	200, 230, 241
BstSFI	CTRYAG	1 cut(s)	785
BstV1I	GCAGC	7 cut(s)	35, 400, 495, 527, 620, 723, 771
BstV2I	GAAGAC	1 cut(s)	228
BstX2I	RGATCY	4 cut(s)	35, 227, 637, 1090
BstXI	CCANNNNNNTGG	1 cut(s)	869
BstYI	RGATCY	4 cut(s)	35, 227, 637, 1090
BsuI	GTATCC	1 cut(s)	1193
BsuRI	GGCC	2 cut(s)	630, 1165
BtsCI	GGATG	3 cut(s)	332, 540, 1161
BtsIMutI	CAGTG	2 cut(s)	39, 452
Cac8I	GCNNGC	2 cut(s)	513, 709
Cfr13I	GGNCC	2 cut(s)	1051, 1078
CseI	GACGC	2 cut(s)	703, 1035
CspCI	CAANNNNNGTGG	4 cut(s)	28, 63, 580, 615
CviAII	CATG	6 cut(s)	466, 512, 1070, 1104, 1179, 1187
DraIII	CACNNNGTG	1 cut(s)	458
EaeI	YGGCCR	1 cut(s)	628
Eam1104I	CTCTTC	4 cut(s)	105, 248, 368, 1068
EarI	CTCTTC	4 cut(s)	105, 248, 368, 1068
Eco147I	AGGCCT	1 cut(s)	1165
Eco32I	GATATC	1 cut(s)	679
Eco47I	GGWCC	2 cut(s)	1051, 1078
Eco57I	CTGAAG	1 cut(s)	129
Eco88I	CYCGRG	2 cut(s)	78, 95
EcoNI	CCTNNNNNAGG	2 cut(s)	722, 1085
EcoO109I	RGGNCCY	1 cut(s)	1078
EcoRII	CCWGG	1 cut(s)	241
EcoRV	GATATC	1 cut(s)	679
FaeI	CATG	6 cut(s)	469, 515, 1073, 1107, 1182, 1190
FalI	AAGNNNNNCTT	2 cut(s)	984, 1016
FatI	CATG	6 cut(s)	465, 511, 1069, 1103, 1178, 1186
FbaI	TGATCA	1 cut(s)	1126
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	7 cut(s)	24, 414, 509, 516, 609, 712, 785
FokI	GGATG	3 cut(s)	339, 527, 1168
Fsp4HI	GCNGC	7 cut(s)	24, 414, 509, 516, 609, 712, 785
FspBI	CTAG	4 cut(s)	17, 195, 567, 708
GluI	GCNGC	7 cut(s)	24, 414, 509, 516, 609, 712, 785
HaeIII	GGCC	2 cut(s)	630, 1165
HapII	CCGG	2 cut(s)	201, 231
HgaI	GACGC	2 cut(s)	703, 1035
Hin1I	GRCGYC	1 cut(s)	1027
Hin1II	CATG	6 cut(s)	469, 515, 1073, 1107, 1182, 1190
HincII	GTYRAC	1 cut(s)	214
HindII	GTYRAC	1 cut(s)	214
HinfI	GANTC	6 cut(s)	83, 155, 776, 854, 1084, 1172
HpaI	GTTAAC	1 cut(s)	214
HpaII	CCGG	2 cut(s)	201, 231
HphI	GGTGA	3 cut(s)	277, 506, 670
Hpy166II	GTNNAC	2 cut(s)	207, 214
Hpy188I	TCNGA	6 cut(s)	188, 619, 652, 781, 886, 1060
Hpy8I	GTNNAC	2 cut(s)	207, 214
HpyAV	CCTTC	3 cut(s)	920, 923, 982
HpyCH4III	ACNGT	2 cut(s)	211, 1055
HpyCH4V	TGCA	5 cut(s)	465, 511, 515, 608, 787
HpyF10VI	GCNNNNNNNGC	3 cut(s)	29, 419, 1026
Hsp92I	GRCGYC	1 cut(s)	1027
Hsp92II	CATG	6 cut(s)	469, 515, 1073, 1107, 1182, 1190
Ksp22I	TGATCA	1 cut(s)	1126
KspAI	GTTAAC	1 cut(s)	214
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	4 cut(s)	20, 727, 848, 1107
Lsp1109I	GCAGC	7 cut(s)	35, 400, 495, 527, 620, 723, 771
LweI	GCATC	1 cut(s)	890
MaeI	CTAG	4 cut(s)	17, 195, 567, 708
MaeIII	GTNAC	1 cut(s)	124
MflI	RGATCY	4 cut(s)	35, 227, 637, 1090
MlsI	TGGCCA	1 cut(s)	630
MluCI	AATT	3 cut(s)	100, 758, 791
MluNI	TGGCCA	1 cut(s)	630
MlyI	GAGTC	2 cut(s)	863, 1181
MnlI	CCTC	9 cut(s)	141, 373, 448, 718, 733, 817, 1053, 1069, 1126
Mox20I	TGGCCA	1 cut(s)	630
MscI	TGGCCA	1 cut(s)	630
MseI	TTAA	5 cut(s)	213, 573, 843, 1011, 1192
MslI	CAYNNNNRTG	2 cut(s)	862, 1154
Msp20I	TGGCCA	1 cut(s)	630
MspCI	CTTAAG	1 cut(s)	1010
MspI	CCGG	2 cut(s)	201, 231
MspR9I	CCNGG	3 cut(s)	202, 232, 243
MvaI	CCWGG	1 cut(s)	243
MwoI	GCNNNNNNNGC	3 cut(s)	29, 419, 1026
NciI	CCSGG	2 cut(s)	202, 232
NheI	GCTAGC	1 cut(s)	707
NlaIII	CATG	6 cut(s)	469, 515, 1073, 1107, 1182, 1190
NlaIV	GGNNCC	5 cut(s)	37, 120, 229, 729, 1109
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	515
PaeI	GCATGC	1 cut(s)	515
PaeR7I	CTCGAG	1 cut(s)	78
PceI	AGGCCT	1 cut(s)	1165
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	1 cut(s)	395
PfeI	GAWTC	4 cut(s)	83, 155, 776, 1084
PkrI	GCNGC	7 cut(s)	25, 415, 510, 517, 610, 713, 786
PleI	GAGTC	2 cut(s)	862, 1180
PpsI	GAGTC	2 cut(s)	862, 1180
PpuMI	RGGWCCY	1 cut(s)	1078
Psp5II	RGGWCCY	1 cut(s)	1078
Psp6I	CCWGG	1 cut(s)	241
PspGI	CCWGG	1 cut(s)	241
PspN4I	GGNNCC	5 cut(s)	37, 120, 229, 729, 1109
PspPI	GGNCC	2 cut(s)	1051, 1078
PspPPI	RGGWCCY	1 cut(s)	1078
PstI	CTGCAG	1 cut(s)	789
PsuI	RGATCY	4 cut(s)	35, 227, 637, 1090
RseI	CAYNNNNRTG	2 cut(s)	862, 1154
SapI	GCTCTTC	1 cut(s)	105
SaqAI	TTAA	5 cut(s)	213, 573, 843, 1011, 1192
SatI	GCNGC	7 cut(s)	24, 414, 509, 516, 609, 712, 785
Sau96I	GGNCC	2 cut(s)	1051, 1078
SchI	GAGTC	2 cut(s)	863, 1181
ScrFI	CCNGG	3 cut(s)	202, 232, 243
SfaNI	GCATC	1 cut(s)	890
SfcI	CTRYAG	1 cut(s)	785
Sfr274I	CTCGAG	1 cut(s)	78
SinI	GGWCC	2 cut(s)	1051, 1078
SlaI	CTCGAG	1 cut(s)	78
SmiMI	CAYNNNNRTG	2 cut(s)	862, 1154
SmlI	CTYRAG	2 cut(s)	78, 1010
SmoI	CTYRAG	2 cut(s)	78, 1010
SphI	GCATGC	1 cut(s)	515
Sse9I	AATT	3 cut(s)	100, 758, 791
SseBI	AGGCCT	1 cut(s)	1165
SspMI	CTAG	4 cut(s)	17, 195, 567, 708
StuI	AGGCCT	1 cut(s)	1165
StyD4I	CCNGG	3 cut(s)	200, 230, 241
TaaI	ACNGT	2 cut(s)	211, 1055
TaqI	TCGA	6 cut(s)	79, 153, 336, 389, 675, 918
TasI	AATT	3 cut(s)	100, 758, 791
TfiI	GAWTC	4 cut(s)	83, 155, 776, 1084
Tru1I	TTAA	5 cut(s)	213, 573, 843, 1011, 1192
Tru9I	TTAA	5 cut(s)	213, 573, 843, 1011, 1192
TscAI	CASTG	2 cut(s)	46, 459
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	7 cut(s)	23, 413, 508, 515, 608, 711, 784
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	5 cut(s)	311, 386, 573, 1086, 1172
TspRI	CASTG	2 cut(s)	46, 459
Vha464I	CTTAAG	1 cut(s)	1010
VpaK11BI	GGWCC	2 cut(s)	1051, 1078
XagI	CCTNNNNNAGG	2 cut(s)	722, 1085
XceI	RCATGY	1 cut(s)	515
XhoI	CTCGAG	1 cut(s)	78
XmiI	GTMKAC	1 cut(s)	206
XspI	CTAG	4 cut(s)	17, 195, 567, 708

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.