Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Reverse (-)

12551854 .. 12553395

Gene Structure 1542 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g09790.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 828 bp

ATGTTGGGATCGATGTACATGATGTCTGCTGGAAAAGCTGAGATCAATAAGCTGAATACAGCTATGGATGAGACTGCAAGAATTGTGCAGGAGTTAAAATCTGAGCTTCATAAAAGAAAATCACCGCACAATCTGCAAGTTTCGGGCTCTGCAGGTGAAGCCAATACAACTAGTTGCACGCTTACTCAGCCAGAACTCAACAAGTCAAGTACAGAAAACAGAGGCCCCAGTAATATGAAAATGTCCAGTTTTACTGTATCTGAGGATGGTGAATGTGCTAGTAGTGTTCTTACAGAAGAGCAGGAGCTACATCCTGAGGTTATGGACATGGATCAATTGGAAGCAGAACTCGAGTCTGAACTACAAAAACTTCCATGGTGTGCCATGGATACTCCTCGCCATGATGGATTGAGTAATCTGGGCCAGGACATTGTCTCCGAAGTTACAGCTCAAGGGTTTCATGACCTAGAGGGACGGGGTTTGGATAGTGAGCAGTACCACGGAGTATTGCCAGCTCAACTAGATCAGAAACTATGCCATGTGCTCATGGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCTGAACTGCATTCAGCCCAATCAAAACTCCAACAGAAAGAAACTGAACTTGAAACATTGAAGGACTGTGTTAGATGCCTAACTGAGTTATCTCTTGGAAATGTCTCAGATGACGAAAACGAGACATGCATTGGACAAGAGCAGAGCATTGAATGGAACTGCAACATGGAGGGATGCGAGTCCACAAAACCAATGGTTGGGATGAAACGACCTATTGGTTCCGAATCCTGCAGTTACAATGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

276

Amino Acids

30.45

Weight (kDa)

4.51

Isoelectric Point (pI)

62.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	143
Acc36I	ACCTGC	1 cut(s)	143
AccB7I	CCANNNNNTGG	2 cut(s)	571, 779
AciI	CCGC	1 cut(s)	125
AclWI	GGATC	2 cut(s)	16, 339
AfaI	GTAC	3 cut(s)	17, 211, 497
AfiI	CCNNNNNNNGG	2 cut(s)	571, 779
AgsI	TTSAA	3 cut(s)	635, 643, 734
AhlI	ACTAGT	1 cut(s)	170
AjnI	CCWGG	1 cut(s)	423
AluBI	AGCT	8 cut(s)	38, 52, 62, 106, 307, 449, 515, 577
AluI	AGCT	8 cut(s)	38, 52, 62, 106, 307, 449, 515, 577
Alw21I	GWGCWC	1 cut(s)	546
Alw26I	GTCTC	4 cut(s)	65, 439, 691, 698
AlwI	GGATC	2 cut(s)	16, 339
Ama87I	CYCGRG	1 cut(s)	350
AoxI	GGCC	2 cut(s)	223, 421
AspS9I	GGNCC	2 cut(s)	224, 421
AsuHPI	GGTGA	3 cut(s)	114, 167, 281
AvaI	CYCGRG	1 cut(s)	350
AxyI	CCTNAGG	1 cut(s)	315
BanII	GRGCYC	1 cut(s)	149
Bbv12I	GWGCWC	1 cut(s)	546
BccI	CCATC	2 cut(s)	260, 398
BciT130I	CCWGG	1 cut(s)	425
BciVI	GTATCC	1 cut(s)	382
BcoDI	GTCTC	4 cut(s)	65, 439, 691, 698
BcuI	ACTAGT	1 cut(s)	170
BfaI	CTAG	4 cut(s)	171, 279, 467, 521
BfmI	CTRYAG	2 cut(s)	150, 811
BfuAI	ACCTGC	1 cut(s)	143
BfuI	GTATCC	1 cut(s)	382
Bme1390I	CCNGG	1 cut(s)	425
BmeT110I	CYCGRG	1 cut(s)	350
BmgT120I	GGNCC	2 cut(s)	224, 421
BmiI	GGNNCC	2 cut(s)	226, 802
BmrFI	CCNGG	1 cut(s)	425
BmrI	ACTGGG	1 cut(s)	222
BmsI	GCATC	2 cut(s)	647, 746
BmuI	ACTGGG	1 cut(s)	222
BpuEI	CTTGAG	1 cut(s)	435
Bsa29I	ATCGAT	1 cut(s)	11
BsaJI	CCNNGG	3 cut(s)	374, 384, 499
BsaXI	ACNNNNNCTCC	2 cut(s)	419, 449
Bsc4I	CCNNNNNNNGG	2 cut(s)	571, 779
Bse1I	ACTGG	2 cut(s)	228, 246
Bse21I	CCTNAGG	1 cut(s)	315
BseBI	CCWGG	1 cut(s)	425
BseCI	ATCGAT	1 cut(s)	11
BseDI	CCNNGG	3 cut(s)	374, 384, 499
BseGI	GGATG	5 cut(s)	73, 271, 310, 761, 789
BseLI	CCNNNNNNNGG	2 cut(s)	571, 779
BseMII	CTCAG	7 cut(s)	30, 93, 200, 252, 306, 657, 702
BseNI	ACTGG	2 cut(s)	228, 246
BseRI	GAGGAG	1 cut(s)	384
BsgI	GTGCAG	1 cut(s)	107
BshFI	GGCC	2 cut(s)	225, 423
BshVI	ATCGAT	1 cut(s)	11
BsiHKAI	GWGCWC	1 cut(s)	546
BsiHKCI	CYCGRG	1 cut(s)	350
BslFI	GGGAC	1 cut(s)	486
BslI	CCNNNNNNNGG	2 cut(s)	571, 779
BsmAI	GTCTC	4 cut(s)	65, 439, 691, 698
BsmFI	GGGAC	1 cut(s)	486
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	2 cut(s)	225, 423
BsoBI	CYCGRG	1 cut(s)	350
Bsp1286I	GDGCHC	2 cut(s)	149, 546
Bsp1407I	TGTACA	1 cut(s)	15
Bsp143I	GATC	4 cut(s)	8, 42, 331, 523
Bsp19I	CCATGG	2 cut(s)	374, 384
BspACI	CCGC	1 cut(s)	125
BspANI	GGCC	2 cut(s)	225, 423
BspCNI	CTCAG	7 cut(s)	31, 94, 199, 253, 307, 658, 701
BspDI	ATCGAT	1 cut(s)	11
BspHI	TCATGA	1 cut(s)	460
BspLI	GGNNCC	2 cut(s)	226, 802
BspMAI	CTGCAG	2 cut(s)	154, 815
BspMI	ACCTGC	1 cut(s)	143
BspPI	GGATC	2 cut(s)	16, 339
BspQI	GCTCTTC	1 cut(s)	291
BsrGI	TGTACA	1 cut(s)	15
BsrI	ACTGG	2 cut(s)	228, 246
BssECI	CCNNGG	3 cut(s)	374, 384, 499
BssMI	GATC	4 cut(s)	8, 42, 331, 523
BssT1I	CCWWGG	2 cut(s)	374, 384
Bst2UI	CCWGG	1 cut(s)	425
Bst4CI	ACNGT	2 cut(s)	256, 650
Bst6I	CTCTTC	1 cut(s)	291
BstAPI	GCANNNNNTGC	1 cut(s)	133
BstAUI	TGTACA	1 cut(s)	15
BstC8I	GCNNGC	2 cut(s)	179, 513
BstDEI	CTNAG	7 cut(s)	39, 102, 186, 261, 315, 666, 688
BstDSI	CCRYGG	3 cut(s)	374, 384, 499
BstF5I	GGATG	5 cut(s)	73, 271, 310, 761, 789
BstKTI	GATC	4 cut(s)	11, 45, 334, 526
BstMAI	GTCTC	4 cut(s)	65, 439, 691, 698
BstMBI	GATC	4 cut(s)	8, 42, 331, 523
BstMWI	GCNNNNNNNGC	4 cut(s)	35, 133, 158, 187
BstNI	CCWGG	1 cut(s)	425
BstNSI	RCATGY	1 cut(s)	711
BstSCI	CCNGG	1 cut(s)	423
BstSFI	CTRYAG	2 cut(s)	150, 811
Bsu15I	ATCGAT	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	315
BsuI	GTATCC	1 cut(s)	382
BsuRI	GGCC	2 cut(s)	225, 423
BsuTUI	ATCGAT	1 cut(s)	11
BtgI	CCRYGG	3 cut(s)	374, 384, 499
BtsCI	GGATG	5 cut(s)	73, 271, 310, 761, 789
BveI	ACCTGC	1 cut(s)	143
Cac8I	GCNNGC	2 cut(s)	179, 513
CciI	TCATGA	1 cut(s)	460
Cfr13I	GGNCC	2 cut(s)	224, 421
ClaI	ATCGAT	1 cut(s)	11
Csp6I	GTAC	3 cut(s)	16, 210, 496
CviQI	GTAC	3 cut(s)	16, 210, 496
DdeI	CTNAG	7 cut(s)	39, 102, 186, 261, 315, 666, 688
DpnI	GATC	4 cut(s)	10, 44, 333, 525
DpnII	GATC	4 cut(s)	8, 42, 331, 523
Eam1104I	CTCTTC	1 cut(s)	291
EarI	CTCTTC	1 cut(s)	291
Eco130I	CCWWGG	2 cut(s)	374, 384
Eco24I	GRGCYC	1 cut(s)	149
Eco81I	CCTNAGG	1 cut(s)	315
Eco88I	CYCGRG	1 cut(s)	350
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRII	CCWGG	1 cut(s)	423
EcoT14I	CCWWGG	2 cut(s)	374, 384
EcoT22I	ATGCAT	2 cut(s)	713, 826
EcoT38I	GRGCYC	1 cut(s)	149
ErhI	CCWWGG	2 cut(s)	374, 384
FaqI	GGGAC	1 cut(s)	486
FokI	GGATG	5 cut(s)	80, 278, 297, 768, 796
FriOI	GRGCYC	1 cut(s)	149
FspBI	CTAG	4 cut(s)	171, 279, 467, 521
HaeIII	GGCC	2 cut(s)	225, 423
HinfI	GANTC	4 cut(s)	353, 581, 761, 806
HphI	GGTGA	3 cut(s)	114, 167, 281
Hpy166II	GTNNAC	1 cut(s)	765
Hpy188I	TCNGA	8 cut(s)	103, 262, 358, 439, 528, 586, 691, 805
Hpy188III	TCNNGA	2 cut(s)	314, 461
Hpy8I	GTNNAC	1 cut(s)	765
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	2 cut(s)	256, 650
HpyF10VI	GCNNNNNNNGC	4 cut(s)	35, 133, 158, 187
HpyF3I	CTNAG	7 cut(s)	39, 102, 186, 261, 315, 666, 688
Kzo9I	GATC	4 cut(s)	8, 42, 331, 523
LguI	GCTCTTC	1 cut(s)	291
LmnI	GCTCC	2 cut(s)	304, 574
LweI	GCATC	2 cut(s)	647, 746
MaeI	CTAG	4 cut(s)	171, 279, 467, 521
MaeIII	GTNAC	2 cut(s)	442, 815
MalI	GATC	4 cut(s)	10, 44, 333, 525
MboI	GATC	4 cut(s)	8, 42, 331, 523
MboII	GAAGA	1 cut(s)	308
MfeI	CAATTG	1 cut(s)	335
MhlI	GDGCHC	2 cut(s)	149, 546
MluCI	AATT	3 cut(s)	81, 335, 567
MlyI	GAGTC	2 cut(s)	362, 770
MmeI	TCCRAC	1 cut(s)	637
MnlI	CCTC	6 cut(s)	215, 256, 310, 405, 463, 745
Mph1103I	ATGCAT	2 cut(s)	713, 826
MseI	TTAA	1 cut(s)	95
MspR9I	CCNGG	1 cut(s)	425
MunI	CAATTG	1 cut(s)	335
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	1 cut(s)	425
MwoI	GCNNNNNNNGC	4 cut(s)	35, 133, 158, 187
NcoI	CCATGG	2 cut(s)	374, 384
NdeII	GATC	4 cut(s)	8, 42, 331, 523
NlaIV	GGNNCC	2 cut(s)	226, 802
NsiI	ATGCAT	2 cut(s)	713, 826
NspI	RCATGY	1 cut(s)	711
PaeR7I	CTCGAG	1 cut(s)	350
PagI	TCATGA	1 cut(s)	460
PaqCI	CACCTGC	1 cut(s)	143
PciSI	GCTCTTC	1 cut(s)	291
PctI	GAATGC	1 cut(s)	592
PfeI	GAWTC	2 cut(s)	581, 806
PflFI	GACNNNGTC	1 cut(s)	431
PflMI	CCANNNNNTGG	2 cut(s)	571, 779
PleI	GAGTC	2 cut(s)	361, 769
PpsI	GAGTC	2 cut(s)	361, 769
Psp6I	CCWGG	1 cut(s)	423
PspGI	CCWGG	1 cut(s)	423
PspN4I	GGNNCC	2 cut(s)	226, 802
PspPI	GGNCC	2 cut(s)	224, 421
PspXI	VCTCGAGB	1 cut(s)	350
PstI	CTGCAG	2 cut(s)	154, 815
PsyI	GACNNNGTC	1 cut(s)	431
RsaI	GTAC	3 cut(s)	17, 211, 497
RsaNI	GTAC	3 cut(s)	16, 210, 496
SapI	GCTCTTC	1 cut(s)	291
SaqAI	TTAA	1 cut(s)	95
Sau3AI	GATC	4 cut(s)	8, 42, 331, 523
Sau96I	GGNCC	2 cut(s)	224, 421
SchI	GAGTC	2 cut(s)	362, 770
ScrFI	CCNGG	1 cut(s)	425
SduI	GDGCHC	2 cut(s)	149, 546
SfaNI	GCATC	2 cut(s)	647, 746
SfcI	CTRYAG	2 cut(s)	150, 811
Sfr274I	CTCGAG	1 cut(s)	350
SlaI	CTCGAG	1 cut(s)	350
SmlI	CTYRAG	2 cut(s)	350, 450
SmoI	CTYRAG	2 cut(s)	350, 450
SpeI	ACTAGT	1 cut(s)	170
Sse9I	AATT	3 cut(s)	81, 335, 567
SsiI	CCGC	1 cut(s)	125
SspMI	CTAG	4 cut(s)	171, 279, 467, 521
StyD4I	CCNGG	1 cut(s)	423
StyI	CCWWGG	2 cut(s)	374, 384
TaaI	ACNGT	2 cut(s)	256, 650
TaqI	TCGA	2 cut(s)	11, 351
TasI	AATT	3 cut(s)	81, 335, 567
TatI	WGTACW	2 cut(s)	15, 209
TfiI	GAWTC	2 cut(s)	581, 806
Tru1I	TTAA	1 cut(s)	95
Tru9I	TTAA	1 cut(s)	95
TspDTI	ATGAA	4 cut(s)	98, 251, 449, 800
TspGWI	ACGGA	1 cut(s)	516
Tth111I	GACNNNGTC	1 cut(s)	431
Van91I	CCANNNNNTGG	2 cut(s)	571, 779
XceI	RCATGY	1 cut(s)	711
XcmI	CCANNNNNNNNNTGG	1 cut(s)	772
XhoI	CTCGAG	1 cut(s)	350
XspI	CTAG	4 cut(s)	171, 279, 467, 521
Zsp2I	ATGCAT	2 cut(s)	713, 826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.