Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Forward (+)

19508814 .. 19511368

Gene Structure 2555 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0218400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGGATGATAATGGTATTGTCATGCCTGATATTGTAATTCTCAACATTCGCAACCCCTTTTTGGATCCCAAGATTGTCTGCCCCATAAAACTGATAAAAGCCAGTAACGACGTCTTCAGTACGGCTAAACATTTGTTTTCTGCGGAGCGTTGGTGGTGTACTTACCATTTATTGTCAGTGATGGAAAGTAATTCCTGGATGTCCTTCGATCGGAGGTGGAATTTATTGATAGCATCCCCTACTGAAGCCTATTTCGAGCAACATTTAATGCAGCTACGCACCGAGTCAAGTGGGTATCCAGAGGCAGTTGAATATTTAATCGACACTTTGTTGAAGCTTAAGGAAACGTGTGTTGCAGCATGGACAGATAAAGTTATGCACTTTGGGAATACAAACCGGCATGTGAGCTATTACGGCACGGGACGCTCCCGTATTTTGAAAATTTATCTCCGTGAATGTAAATATCCTGTAGTCGAAGAGCAAACATTAATCGACAAATTTTGGAAGAATGCGCATAGTCAAAATGAGAAAAGTCGCCTAGAAATTGACGGTTCGTTTCTGAAATCTTTAAATAATGAGTACAATAATGATGAAGAGGGAGTATTGAAGGAACTCCATGGGGCTATTTCCATTTATGCATTAGATAATATCCGTAAGCAGACCTCGCTAGCCAATGAGATAGATGATGACCATAGTGAGTGTAGTTGTGCTATAAAACGTACCCATGGCTTACCATGTGCACATGAAATTGCCAAGTACAAGAGAGAAGGTCGACCTATTCCACTTGAATGCATCAATTCTCATTGGAGGAAAGTTCCCCGCTTGAAACCTTTGAGAAGGACCGGAGAGCCCAATGTGCATGAGACGCTGAAACGACCTAGGTTAAGTGAGGGGATGAATACAAATGCTCATTCTGCTCTATCCTTACCTGGCATTGTGGAATCTGAACGTAATTCATCACCGAATGCTGGTCCATCTATCGTGCCCTCAACACATGAGTGGCAGCCAAGGGATGGGGTGTATGACATCCAGACAACTAAGCAACTTGAGTTTGTAGATGTATGTCCGCTTGTAATGAGGCCATATATCTCTCATGTAAGGGGTGTTCCAAGAGATGGCCATTGCGGTTTTAGAGCTATAGCATCATTTATGGGTTACGGTGAAGAGGTTGGATGGGTGAAAGTGCGGGAGGACTTAATTAACAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

46.15

Weight (kDa)

6.97

Isoelectric Point (pI)

45.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	114
Acc16I	TGCGCA	1 cut(s)	513
AccB7I	CCANNNNNTGG	2 cut(s)	1013, 1115
AccI	GTMKAC	1 cut(s)	772
AciI	CCGC	5 cut(s)	143, 820, 1067, 1125, 1186
AclWI	GGATC	2 cut(s)	59, 72
AcoI	YGGCCR	1 cut(s)	1117
AcsI	RAATTY	3 cut(s)	220, 441, 497
AcuI	CTGAAG	2 cut(s)	100, 264
AcyI	GRCGYC	1 cut(s)	111
AfaI	GTAC	5 cut(s)	121, 160, 581, 721, 758
AfiI	CCNNNNNNNGG	5 cut(s)	61, 210, 968, 1013, 1115
AflII	CTTAAG	1 cut(s)	338
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	6 cut(s)	311, 334, 439, 607, 788, 826
AjnI	CCWGG	2 cut(s)	194, 928
AleI	CACNNNNGTG	1 cut(s)	997
AluBI	AGCT	4 cut(s)	274, 337, 408, 1136
AluI	AGCT	4 cut(s)	274, 337, 408, 1136
Alw21I	GWGCWC	1 cut(s)	742
Alw26I	GTCTC	1 cut(s)	857
Alw44I	GTGCAC	1 cut(s)	738
AlwI	GGATC	2 cut(s)	59, 72
AoxI	GGCC	2 cut(s)	1079, 1117
ApaLI	GTGCAC	1 cut(s)	738
ApeKI	GCWGC	3 cut(s)	271, 356, 1003
ApoI	RAATTY	3 cut(s)	220, 441, 497
AseI	ATTAAT	1 cut(s)	488
AspA2I	CCTAGG	1 cut(s)	878
AspLEI	GCGC	1 cut(s)	514
AspS9I	GGNCC	2 cut(s)	840, 971
AsuHPI	GGTGA	3 cut(s)	951, 1172, 1189
AsuNHI	GCTAGC	1 cut(s)	667
AvaII	GGWCC	2 cut(s)	840, 971
AvrII	CCTAGG	1 cut(s)	878
BaeGI	GKGCMC	2 cut(s)	742, 987
BalI	TGGCCA	1 cut(s)	1119
BamHI	GGATCC	1 cut(s)	64
BanII	GRGCYC	1 cut(s)	852
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	742
BbvI	GCAGC	3 cut(s)	283, 368, 1015
BccI	CCATC	5 cut(s)	175, 982, 1007, 1109, 1167
BceAI	ACGGC	2 cut(s)	138, 430
BciT130I	CCWGG	2 cut(s)	196, 930
BciVI	GTATCC	1 cut(s)	306
BcoDI	GTCTC	1 cut(s)	857
BfaI	CTAG	3 cut(s)	539, 668, 879
BfmI	CTRYAG	2 cut(s)	468, 1137
BfrI	CTTAAG	1 cut(s)	338
BfuI	GTATCC	1 cut(s)	306
BisI	GCNGC	3 cut(s)	272, 357, 1004
BlnI	CCTAGG	1 cut(s)	878
BlsI	GCNGC	3 cut(s)	273, 358, 1005
Bme1390I	CCNGG	2 cut(s)	196, 930
Bme18I	GGWCC	2 cut(s)	840, 971
BmgT120I	GGNCC	2 cut(s)	840, 971
BmiI	GGNNCC	1 cut(s)	66
BmrFI	CCNGG	2 cut(s)	196, 930
BmsI	GCATC	3 cut(s)	242, 801, 1151
BmtI	GCTAGC	1 cut(s)	671
BpiI	GAAGAC	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	1067
BsaHI	GRCGYC	1 cut(s)	111
BsaJI	CCNNGG	4 cut(s)	616, 724, 878, 1007
BsaWI	WCCGGW	1 cut(s)	842
BsaXI	ACNNNNNCTCC	2 cut(s)	137, 167
Bsc4I	CCNNNNNNNGG	5 cut(s)	61, 210, 968, 1013, 1115
Bse118I	RCCGGY	1 cut(s)	396
Bse1I	ACTGG	1 cut(s)	102
Bse3DI	GCAATG	1 cut(s)	1120
BseBI	CCWGG	2 cut(s)	196, 930
BseDI	CCNNGG	4 cut(s)	616, 724, 878, 1007
BseGI	GGATG	7 cut(s)	10, 204, 233, 900, 1018, 1026, 1178
BseLI	CCNNNNNNNGG	5 cut(s)	61, 210, 968, 1013, 1115
BseMI	GCAATG	1 cut(s)	1120
BseNI	ACTGG	1 cut(s)	102
BseSI	GKGCMC	2 cut(s)	742, 987
BseXI	GCAGC	3 cut(s)	283, 368, 1015
Bsh1285I	CGRYCG	1 cut(s)	211
BshFI	GGCC	2 cut(s)	1081, 1119
BsiEI	CGRYCG	1 cut(s)	211
BsiHKAI	GWGCWC	1 cut(s)	742
BsiSI	CCGG	2 cut(s)	397, 843
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	5 cut(s)	61, 210, 968, 1013, 1115
BsmAI	GTCTC	1 cut(s)	857
BsmBI	CGTCTC	1 cut(s)	857
BsmFI	GGGAC	1 cut(s)	435
BsmI	GAATGC	3 cut(s)	514, 794, 970
BsnI	GGCC	2 cut(s)	1081, 1119
Bsp1286I	GDGCHC	3 cut(s)	742, 852, 987
Bsp143I	GATC	2 cut(s)	64, 208
Bsp19I	CCATGG	2 cut(s)	616, 724
BspACI	CCGC	5 cut(s)	143, 820, 1067, 1125, 1186
BspANI	GGCC	2 cut(s)	1081, 1119
BspLI	GGNNCC	1 cut(s)	66
BspOI	GCTAGC	1 cut(s)	671
BspPI	GGATC	2 cut(s)	59, 72
BspQI	GCTCTTC	1 cut(s)	471
BspTI	CTTAAG	1 cut(s)	338
BsrDI	GCAATG	1 cut(s)	1120
BsrFI	RCCGGY	1 cut(s)	396
BsrI	ACTGG	1 cut(s)	102
BssAI	RCCGGY	1 cut(s)	396
BssECI	CCNNGG	4 cut(s)	616, 724, 878, 1007
BssMI	GATC	2 cut(s)	64, 208
BssNI	GRCGYC	1 cut(s)	111
BssT1I	CCWWGG	4 cut(s)	616, 724, 878, 1007
Bst2UI	CCWGG	2 cut(s)	196, 930
Bst4CI	ACNGT	2 cut(s)	551, 1160
Bst6I	CTCTTC	3 cut(s)	471, 588, 1158
BstACI	GRCGYC	1 cut(s)	111
BstAFI	CTTAAG	1 cut(s)	338
BstC8I	GCNNGC	1 cut(s)	669
BstDEI	CTNAG	1 cut(s)	1038
BstDSI	CCRYGG	2 cut(s)	616, 724
BstF5I	GGATG	7 cut(s)	10, 204, 233, 900, 1018, 1026, 1178
BstHHI	GCGC	1 cut(s)	514
BstKTI	GATC	2 cut(s)	67, 211
BstMAI	GTCTC	1 cut(s)	857
BstMBI	GATC	2 cut(s)	64, 208
BstMCI	CGRYCG	1 cut(s)	211
BstMWI	GCNNNNNNNGC	6 cut(s)	414, 423, 664, 856, 865, 914
BstNI	CCWGG	2 cut(s)	196, 930
BstNSI	RCATGY	1 cut(s)	404
BstSCI	CCNGG	2 cut(s)	194, 928
BstSFI	CTRYAG	2 cut(s)	468, 1137
BstSLI	GKGCMC	2 cut(s)	742, 987
BstV1I	GCAGC	3 cut(s)	283, 368, 1015
BstV2I	GAAGAC	1 cut(s)	106
BstX2I	RGATCY	1 cut(s)	64
BstYI	RGATCY	1 cut(s)	64
BsuI	GTATCC	1 cut(s)	306
BsuRI	GGCC	2 cut(s)	1081, 1119
BtgI	CCRYGG	2 cut(s)	616, 724
BtsCI	GGATG	7 cut(s)	10, 204, 233, 900, 1018, 1026, 1178
BtsIMutI	CAGTG	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	669
CfoI	GCGC	1 cut(s)	514
Cfr10I	RCCGGY	1 cut(s)	396
Cfr13I	GGNCC	2 cut(s)	840, 971
CseI	GACGC	2 cut(s)	432, 874
Csp6I	GTAC	5 cut(s)	120, 159, 580, 720, 757
CviQI	GTAC	5 cut(s)	120, 159, 580, 720, 757
DdeI	CTNAG	1 cut(s)	1038
DpnI	GATC	2 cut(s)	66, 210
DpnII	GATC	2 cut(s)	64, 208
DraI	TTTAAA	1 cut(s)	570
EaeI	YGGCCR	1 cut(s)	1117
Eam1104I	CTCTTC	3 cut(s)	471, 588, 1158
EarI	CTCTTC	3 cut(s)	471, 588, 1158
Eco130I	CCWWGG	4 cut(s)	616, 724, 878, 1007
Eco24I	GRGCYC	1 cut(s)	852
Eco47I	GGWCC	2 cut(s)	840, 971
Eco57I	CTGAAG	2 cut(s)	100, 264
EcoRII	CCWGG	2 cut(s)	194, 928
EcoT14I	CCWWGG	4 cut(s)	616, 724, 878, 1007
EcoT22I	ATGCAT	2 cut(s)	640, 794
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	4 cut(s)	616, 724, 878, 1007
Esp3I	CGTCTC	1 cut(s)	857
FaqI	GGGAC	1 cut(s)	435
FauI	CCCGC	2 cut(s)	827, 1179
FblI	GTMKAC	1 cut(s)	772
Fnu4HI	GCNGC	3 cut(s)	272, 357, 1004
FokI	GGATG	7 cut(s)	17, 211, 220, 907, 1013, 1025, 1185
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	3 cut(s)	272, 357, 1004
FspAI	RTGCGCAY	1 cut(s)	513
FspBI	CTAG	3 cut(s)	539, 668, 879
FspI	TGCGCA	1 cut(s)	513
GlaI	GCGC	1 cut(s)	513
GluI	GCNGC	3 cut(s)	272, 357, 1004
HaeIII	GGCC	2 cut(s)	1081, 1119
HapII	CCGG	2 cut(s)	397, 843
HgaI	GACGC	2 cut(s)	432, 874
HhaI	GCGC	1 cut(s)	514
Hin1I	GRCGYC	1 cut(s)	111
Hin6I	GCGC	1 cut(s)	512
HinP1I	GCGC	1 cut(s)	512
HincII	GTYRAC	1 cut(s)	773
HindII	GTYRAC	1 cut(s)	773
HindIII	AAGCTT	1 cut(s)	335
HinfI	GANTC	2 cut(s)	284, 941
HpaII	CCGG	2 cut(s)	397, 843
HphI	GGTGA	3 cut(s)	951, 1172, 1189
Hpy166II	GTNNAC	3 cut(s)	159, 740, 773
Hpy188I	TCNGA	3 cut(s)	213, 561, 946
Hpy188III	TCNNGA	2 cut(s)	299, 1030
Hpy8I	GTNNAC	3 cut(s)	159, 740, 773
Hpy99I	CGWCG	1 cut(s)	113
HpyAV	CCTTC	4 cut(s)	214, 601, 761, 831
HpyCH4III	ACNGT	2 cut(s)	551, 1160
HpyCH4IV	ACGT	4 cut(s)	111, 347, 718, 949
HpyCH4V	TGCA	7 cut(s)	271, 356, 379, 638, 740, 792, 859
HpyF10VI	GCNNNNNNNGC	6 cut(s)	414, 423, 664, 856, 865, 914
HpyF3I	CTNAG	1 cut(s)	1038
HpySE526I	ACGT	4 cut(s)	111, 347, 718, 949
Hsp92I	GRCGYC	1 cut(s)	111
HspAI	GCGC	1 cut(s)	512
Kzo9I	GATC	2 cut(s)	64, 208
LguI	GCTCTTC	1 cut(s)	471
LmnI	GCTCC	2 cut(s)	145, 431
Lsp1109I	GCAGC	3 cut(s)	283, 368, 1015
LweI	GCATC	3 cut(s)	242, 801, 1151
MaeI	CTAG	3 cut(s)	539, 668, 879
MaeII	ACGT	4 cut(s)	111, 347, 718, 949
MaeIII	GTNAC	2 cut(s)	104, 1154
MalI	GATC	2 cut(s)	66, 210
MboI	GATC	2 cut(s)	64, 208
MboII	GAAGA	5 cut(s)	106, 488, 517, 605, 1175
MflI	RGATCY	1 cut(s)	64
MhlI	GDGCHC	3 cut(s)	742, 852, 987
MlsI	TGGCCA	1 cut(s)	1119
MluNI	TGGCCA	1 cut(s)	1119
MlyI	GAGTC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	1150
Mox20I	TGGCCA	1 cut(s)	1119
Mph1103I	ATGCAT	2 cut(s)	640, 794
MscI	TGGCCA	1 cut(s)	1119
MseI	TTAA	8 cut(s)	266, 317, 339, 488, 569, 884, 1196, 1200
MslI	CAYNNNNRTG	2 cut(s)	787, 997
Msp20I	TGGCCA	1 cut(s)	1119
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	2 cut(s)	397, 843
MspR9I	CCNGG	2 cut(s)	196, 930
Mva1269I	GAATGC	3 cut(s)	514, 794, 970
MvaI	CCWGG	2 cut(s)	196, 930
MwoI	GCNNNNNNNGC	6 cut(s)	414, 423, 664, 856, 865, 914
NcoI	CCATGG	2 cut(s)	616, 724
NdeII	GATC	2 cut(s)	64, 208
NheI	GCTAGC	1 cut(s)	667
NlaIV	GGNNCC	1 cut(s)	66
NsbI	TGCGCA	1 cut(s)	513
NsiI	ATGCAT	2 cut(s)	640, 794
NspI	RCATGY	1 cut(s)	404
OliI	CACNNNNGTG	1 cut(s)	997
PacI	TTAATTAA	1 cut(s)	1200
PciSI	GCTCTTC	1 cut(s)	471
PctI	GAATGC	3 cut(s)	514, 794, 970
PfeI	GAWTC	1 cut(s)	941
PflMI	CCANNNNNTGG	2 cut(s)	1013, 1115
PfoI	TCCNGGA	1 cut(s)	194
PkrI	GCNGC	3 cut(s)	273, 358, 1005
Ple19I	CGATCG	1 cut(s)	211
PleI	GAGTC	1 cut(s)	292
PpsI	GAGTC	1 cut(s)	292
PshBI	ATTAAT	1 cut(s)	488
Psp6I	CCWGG	2 cut(s)	194, 928
PspGI	CCWGG	2 cut(s)	194, 928
PspN4I	GGNNCC	1 cut(s)	66
PspPI	GGNCC	2 cut(s)	840, 971
PsrI	GAACNNNNNNTAC	2 cut(s)	1089, 1121
PsuI	RGATCY	1 cut(s)	64
PvuI	CGATCG	1 cut(s)	211
RsaI	GTAC	5 cut(s)	121, 160, 581, 721, 758
RsaNI	GTAC	5 cut(s)	120, 159, 580, 720, 757
RseI	CAYNNNNRTG	2 cut(s)	787, 997
SalI	GTCGAC	1 cut(s)	771
SapI	GCTCTTC	1 cut(s)	471
SaqAI	TTAA	8 cut(s)	266, 317, 339, 488, 569, 884, 1196, 1200
SatI	GCNGC	3 cut(s)	272, 357, 1004
Sau3AI	GATC	2 cut(s)	64, 208
Sau96I	GGNCC	2 cut(s)	840, 971
SchI	GAGTC	1 cut(s)	293
ScrFI	CCNGG	2 cut(s)	196, 930
SduI	GDGCHC	3 cut(s)	742, 852, 987
SfaNI	GCATC	3 cut(s)	242, 801, 1151
SfcI	CTRYAG	2 cut(s)	468, 1137
SinI	GGWCC	2 cut(s)	840, 971
SmiMI	CAYNNNNRTG	2 cut(s)	787, 997
SmlI	CTYRAG	2 cut(s)	338, 1046
SmoI	CTYRAG	2 cut(s)	338, 1046
SsiI	CCGC	5 cut(s)	143, 820, 1067, 1125, 1186
SspI	AATATT	1 cut(s)	314
SspMI	CTAG	3 cut(s)	539, 668, 879
StyD4I	CCNGG	2 cut(s)	194, 928
StyI	CCWWGG	4 cut(s)	616, 724, 878, 1007
TaaI	ACNGT	2 cut(s)	551, 1160
TaiI	ACGT	4 cut(s)	114, 350, 721, 952
TaqI	TCGA	6 cut(s)	207, 255, 321, 474, 492, 772
TatI	WGTACW	3 cut(s)	158, 579, 756
TfiI	GAWTC	1 cut(s)	941
Tru1I	TTAA	8 cut(s)	266, 317, 339, 488, 569, 884, 1196, 1200
Tru9I	TTAA	8 cut(s)	266, 317, 339, 488, 569, 884, 1196, 1200
TscAI	CASTG	1 cut(s)	183
TseI	GCWGC	3 cut(s)	271, 356, 1003
TspDTI	ATGAA	4 cut(s)	606, 759, 911, 945
TspGWI	ACGGA	2 cut(s)	440, 641
TspRI	CASTG	1 cut(s)	183
Van91I	CCANNNNNTGG	2 cut(s)	1013, 1115
Vha464I	CTTAAG	1 cut(s)	338
VneI	GTGCAC	1 cut(s)	738
VpaK11BI	GGWCC	2 cut(s)	840, 971
VspI	ATTAAT	1 cut(s)	488
XapI	RAATTY	3 cut(s)	220, 441, 497
XceI	RCATGY	1 cut(s)	404
XmaJI	CCTAGG	1 cut(s)	878
XmiI	GTMKAC	1 cut(s)	772
XspI	CTAG	3 cut(s)	539, 668, 879
ZraI	GACGTC	1 cut(s)	112
Zsp2I	ATGCAT	2 cut(s)	640, 794

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.