RLG00000024392

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0003917
Physical Location & Seq
Reverse (-)
35435389 .. 35438519
3131 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000024392

Sequence Viewer

Length: 1215 bp
ATGTGGCCGGCTCTCTTCGCCGCAGCAGTCGCCGCCTCCACCGGACTCCTCGCCAAAAACCACCTCTTCAAGCCCGCCGCCGAGATCACCGACTCCGATCCGCAGAACGACGCCGTCTCGGACGATGCGACGCCGCAGCGCTCCGTCGCTTCTGTTTCTCGGTCTCCAGTGCTGCCGTTGGAAAGCGACTGCGGGGATCAGGTCAAGGACGGGATCTTTAGGTTTTCGAGCGACGGCGGGAGTGGGAAGAAGAAGAAGAAGAAGAAGACCAGGTTTCGGTTGAAGAAGAAAGATGTGGTGGATGAGCAGAAGAAGAAGAGTGGGAGGAGAGTTGGTGTTTGCTTGAAGAAGAGGAAGACTGTAGCTTCCAAATGTGGATCGTCTTCTGATGCCAAAGATACCAGCTCATTGTTTAGTTGGGGACTTAACATTGGGATCATGTACATGATGACTGCTGGAAAAGCGGAAATCAATAAGCTGAACACAACCATGGATGAGACTGCAAAAGTTGTGCAGGAGTTAAAATCTGAGCTAAATAAAAGAAAAGCATCACAAAGTCAGCAAGTTTCTTGTTCTGAAAGTGAAGCCAATACACAAGTTCAGAGCCCTAGTTGCAAGCGTACTCAGACAGAACTCAAGAAGTCAAGTGCAGAAAACAGTGAACCTAATTATATGAGAGCTTCCAGTTTTCATATATTTGATGATGGCGAATGTCCAAGTAGTGTTCTTACAGAGGAACAGGAGCCTGAGCCAGAGGTGATGGACATGGATCAATTGGAAGCAGAACTTGAGTCTGAACTGCAAAAACTTCCATGGTGCTCCACAGAAGCTCCTCATCAAGAGGGATTCAGAAATCTGGGAAAGGGACAAGCAGCTCAAGGTATTGATATCGAGCAATTTCAAGGAGTATTACCAGCTGAACTAGACCAGAAGTTATGCCATGTGCTCATTGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCCGAACTGCAGTCGGCCCAATCCAAACTCCAAGAAAAAGAAACTGAACTTCAAGCATTGAAGGACTGTGTTAAACGCCTAACTCAGTTATCCCTTTCAACTGTCTCAGATGATGAAAATGAGGCTCACAATGAACAAGAGCAGATCACTGGTTGGAATTACAACACGGAGAGATATGAGTCAATAAAACCAGTGGTTGGGATGAAAAGACCTATAGATTCTGAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

405

Amino Acids

44.78

Weight (kDa)

5.27

Isoelectric Point (pI)

64.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 973, 1181
AciI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 192, 237, 464
AclWI GGATC 6 cut(s) 92, 204, 221, 385, 443, 777
AcoI YGGCCR 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 111, 131
AfaI GTAC 2 cut(s) 443, 622
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 276, 973, 1181
AgsI TTSAA 8 cut(s) 70, 283, 346, 902, 953, 1037, 1045, 1083
AjnI CCWGG 1 cut(s) 269
AluBI AGCT 9 cut(s) 365, 405, 478, 532, 680, 830, 875, 917, 979
AluI AGCT 9 cut(s) 365, 405, 478, 532, 680, 830, 875, 917, 979
Alw21I GWGCWC 2 cut(s) 821, 948
Alw26I GTCTC 4 cut(s) 121, 168, 491, 1093
AlwI GGATC 6 cut(s) 92, 204, 221, 385, 443, 777
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 5, 999
ApeKI GCWGC 4 cut(s) 23, 136, 172, 872
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 1000
AsuHPI GGTGA 2 cut(s) 79, 769
BanII GRGCYC 1 cut(s) 608
BbsI GAAGAC 3 cut(s) 272, 362, 375
Bbv12I GWGCWC 2 cut(s) 821, 948
BbvI GCAGC 4 cut(s) 35, 148, 159, 884
BccI CCATC 2 cut(s) 698, 754
BceAI ACGGC 3 cut(s) 98, 160, 250
BciT130I CCWGG 1 cut(s) 271
BcoDI GTCTC 4 cut(s) 121, 168, 491, 1093
BfaI CTAG 2 cut(s) 609, 923
BfmI CTRYAG 3 cut(s) 360, 992, 1197
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 873
BlsI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 874
Bme1390I CCNGG 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 1000
BmiI GGNNCC 1 cut(s) 744
BmrFI CCNGG 1 cut(s) 271
BmsI GCATC 3 cut(s) 115, 379, 557
BpiI GAAGAC 3 cut(s) 272, 362, 375
BpmI CTGGAG 1 cut(s) 150
Bpu10I CCTNAGC 1 cut(s) 747
BpuEI CTTGAG 3 cut(s) 620, 809, 861
BsaHI GRCGYC 2 cut(s) 111, 131
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 2 cut(s) 489, 812
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 4 cut(s) 319, 349, 814, 844
Bsc4I CCNNNNNNNGG 3 cut(s) 276, 973, 1181
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 4 cut(s) 167, 684, 1138, 1175
BseBI CCWGG 1 cut(s) 271
BseDI CCNNGG 2 cut(s) 489, 812
BseGI GGATG 3 cut(s) 307, 499, 1191
BseLI CCNNNNNNNGG 3 cut(s) 276, 973, 1181
BseMII CTCAG 5 cut(s) 519, 638, 738, 1082, 1104
BseNI ACTGG 4 cut(s) 167, 684, 1138, 1175
BseRI GAGGAG 3 cut(s) 38, 340, 822
BseXI GCAGC 4 cut(s) 35, 148, 159, 884
BsgI GTGCAG 2 cut(s) 533, 669
BshFI GGCC 2 cut(s) 7, 1001
BsiHKAI GWGCWC 2 cut(s) 821, 948
BsiSI CCGG 2 cut(s) 8, 42
BslFI GGGAC 2 cut(s) 435, 879
BslI CCNNNNNNNGG 3 cut(s) 276, 973, 1181
BsmAI GTCTC 4 cut(s) 121, 168, 491, 1093
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 435, 879
BsnI GGCC 2 cut(s) 7, 1001
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 608, 821, 948
Bsp1407I TGTACA 1 cut(s) 441
Bsp143I GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
Bsp19I CCATGG 2 cut(s) 489, 812
BspACI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 192, 237, 464
BspANI GGCC 2 cut(s) 7, 1001
BspCNI CTCAG 5 cut(s) 520, 637, 739, 1081, 1103
BspLI GGNNCC 1 cut(s) 744
BspMAI CTGCAG 1 cut(s) 996
BspPI GGATC 6 cut(s) 92, 204, 221, 385, 443, 777
BspTNI GGTCTC 1 cut(s) 168
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 441
BsrI ACTGG 4 cut(s) 167, 684, 1138, 1175
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 2 cut(s) 489, 812
BssMI GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
BssNI GRCGYC 2 cut(s) 111, 131
BssT1I CCWWGG 2 cut(s) 489, 812
Bst2UI CCWGG 1 cut(s) 271
Bst4CI ACNGT 4 cut(s) 361, 659, 1052, 1087
Bst6I CTCTTC 4 cut(s) 20, 71, 311, 344
BstACI GRCGYC 2 cut(s) 111, 131
BstAUI TGTACA 1 cut(s) 441
BstC8I GCNNGC 3 cut(s) 9, 75, 617
BstDEI CTNAG 5 cut(s) 528, 624, 747, 1068, 1090
BstDSI CCRYGG 2 cut(s) 489, 812
BstF5I GGATG 3 cut(s) 307, 499, 1191
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 8 cut(s) 87, 100, 199, 216, 380, 438, 772, 1131
BstMAI GTCTC 4 cut(s) 121, 168, 491, 1093
BstMBI GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
BstMWI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 461, 612
BstNI CCWGG 1 cut(s) 271
BstSCI CCNGG 1 cut(s) 269
BstSFI CTRYAG 3 cut(s) 360, 992, 1197
BstV1I GCAGC 4 cut(s) 35, 148, 159, 884
BstV2I GAAGAC 3 cut(s) 272, 362, 375
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 2 cut(s) 7, 1001
BtgI CCRYGG 2 cut(s) 489, 812
BtsCI GGATG 3 cut(s) 307, 499, 1191
BtsIMutI CAGTG 4 cut(s) 174, 664, 1131, 1182
Cac8I GCNNGC 3 cut(s) 9, 75, 617
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 1000
CseI GACGC 2 cut(s) 119, 139
CsiI ACCWGGT 1 cut(s) 269
Csp6I GTAC 2 cut(s) 442, 621
CviAII CATG 6 cut(s) 439, 445, 490, 766, 813, 941
CviQI GTAC 2 cut(s) 442, 621
DdeI CTNAG 5 cut(s) 528, 624, 747, 1068, 1090
DpnI GATC 8 cut(s) 86, 99, 198, 215, 379, 437, 771, 1130
DpnII GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 4 cut(s) 20, 71, 311, 344
EarI CTCTTC 4 cut(s) 20, 71, 311, 344
Eco130I CCWWGG 2 cut(s) 489, 812
Eco24I GRGCYC 1 cut(s) 608
Eco31I GGTCTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 889
Eco47III AGCGCT 1 cut(s) 140
EcoRII CCWGG 1 cut(s) 269
EcoRV GATATC 1 cut(s) 889
EcoT14I CCWWGG 2 cut(s) 489, 812
EcoT38I GRGCYC 1 cut(s) 608
ErhI CCWWGG 2 cut(s) 489, 812
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 6 cut(s) 442, 448, 493, 769, 816, 944
FalI AAGNNNNNCTT 2 cut(s) 771, 803
FaqI GGGAC 2 cut(s) 435, 879
FatI CATG 6 cut(s) 438, 444, 489, 765, 812, 940
FauI CCCGC 3 cut(s) 82, 185, 230
Fnu4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 873
FokI GGATG 3 cut(s) 314, 506, 1198
FriOI GRGCYC 1 cut(s) 608
Fsp4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 873
FspBI CTAG 2 cut(s) 609, 923
GlaI GCGC 1 cut(s) 140
GluI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 873
GsuI CTGGAG 1 cut(s) 150
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 7, 1001
HapII CCGG 2 cut(s) 8, 42
HgaI GACGC 2 cut(s) 119, 139
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 111, 131
Hin1II CATG 6 cut(s) 442, 448, 493, 769, 816, 944
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 8 cut(s) 45, 92, 791, 846, 983, 1163, 1202, 1208
HpaII CCGG 2 cut(s) 8, 42
HphI GGTGA 2 cut(s) 79, 769
Hpy166II GTNNAC 1 cut(s) 662
Hpy188III TCNNGA 3 cut(s) 637, 839, 1212
Hpy8I GTNNAC 1 cut(s) 662
Hpy99I CGWCG 4 cut(s) 113, 133, 149, 236
HpyAV CCTTC 1 cut(s) 1039
HpyCH4III ACNGT 4 cut(s) 361, 659, 1052, 1087
HpyCH4V TGCA 6 cut(s) 503, 514, 615, 650, 802, 994
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 461, 612
HpyF3I CTNAG 5 cut(s) 528, 624, 747, 1068, 1090
Hsp92I GRCGYC 2 cut(s) 111, 131
Hsp92II CATG 6 cut(s) 442, 448, 493, 769, 816, 944
HspAI GCGC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
LmnI GCTCC 5 cut(s) 146, 742, 824, 835, 976
Lsp1109I GCAGC 4 cut(s) 35, 148, 159, 884
LweI GCATC 3 cut(s) 115, 379, 557
MabI ACCWGGT 1 cut(s) 269
MaeI CTAG 2 cut(s) 609, 923
MalI GATC 8 cut(s) 86, 99, 198, 215, 379, 437, 771, 1130
MboI GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
MfeI CAATTG 1 cut(s) 773
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 608, 821, 948
MluCI AATT 5 cut(s) 667, 773, 896, 969, 1141
MlyI GAGTC 4 cut(s) 39, 86, 800, 1172
MmeI TCCRAC 2 cut(s) 159, 1118
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 3 cut(s) 426, 521, 1056
MslI CAYNNNNRTG 2 cut(s) 443, 488
MspA1I CMGCKG 1 cut(s) 917
MspI CCGG 2 cut(s) 8, 42
MspR9I CCNGG 1 cut(s) 271
MunI CAATTG 1 cut(s) 773
MvaI CCWGG 1 cut(s) 271
MwoI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 461, 612
NaeI GCCGGC 1 cut(s) 9
NcoI CCATGG 2 cut(s) 489, 812
NdeII GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 442, 448, 493, 769, 816, 944
NlaIV GGNNCC 1 cut(s) 744
NmeAIII GCCGAG 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 4 cut(s) 846, 983, 1202, 1208
PflFI GACNNNGTC 1 cut(s) 113
PflMI CCANNNNNTGG 2 cut(s) 973, 1181
PkrI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 874
PleI GAGTC 4 cut(s) 39, 86, 799, 1171
PpsI GAGTC 4 cut(s) 39, 86, 799, 1171
Psp6I CCWGG 1 cut(s) 269
PspGI CCWGG 1 cut(s) 269
PspN4I GGNNCC 1 cut(s) 744
PspPI GGNCC 1 cut(s) 1000
PstI CTGCAG 1 cut(s) 996
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 917
RsaI GTAC 2 cut(s) 443, 622
RsaNI GTAC 2 cut(s) 442, 621
RseI CAYNNNNRTG 2 cut(s) 443, 488
SaqAI TTAA 3 cut(s) 426, 521, 1056
SatI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 873
Sau3AI GATC 8 cut(s) 84, 97, 196, 213, 377, 435, 769, 1128
Sau96I GGNCC 1 cut(s) 1000
SchI GAGTC 4 cut(s) 39, 86, 800, 1172
ScrFI CCNGG 1 cut(s) 271
SduI GDGCHC 3 cut(s) 608, 821, 948
SexAI ACCWGGT 1 cut(s) 269
SfaNI GCATC 3 cut(s) 115, 379, 557
SfcI CTRYAG 3 cut(s) 360, 992, 1197
SmiMI CAYNNNNRTG 2 cut(s) 443, 488
SmlI CTYRAG 3 cut(s) 635, 788, 876
SmoI CTYRAG 3 cut(s) 635, 788, 876
Sse9I AATT 5 cut(s) 667, 773, 896, 969, 1141
SsiI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 192, 237, 464
SspMI CTAG 2 cut(s) 609, 923
StyD4I CCNGG 1 cut(s) 269
StyI CCWWGG 2 cut(s) 489, 812
TaaI ACNGT 4 cut(s) 361, 659, 1052, 1087
TaqI TCGA 2 cut(s) 227, 891
TaqII GACCGA 1 cut(s) 150
TasI AATT 5 cut(s) 667, 773, 896, 969, 1141
TatI WGTACW 1 cut(s) 441
TauI GCSGC 4 cut(s) 23, 35, 80, 136
TfiI GAWTC 4 cut(s) 846, 983, 1202, 1208
Tru1I TTAA 3 cut(s) 426, 521, 1056
Tru9I TTAA 3 cut(s) 426, 521, 1056
TscAI CASTG 4 cut(s) 174, 664, 1138, 1182
TseI GCWGC 4 cut(s) 23, 136, 172, 872
TspDTI ATGAA 4 cut(s) 680, 1113, 1131, 1202
TspGWI ACGGA 2 cut(s) 133, 1166
TspRI CASTG 4 cut(s) 174, 664, 1138, 1182
Tth111I GACNNNGTC 1 cut(s) 113
Van91I CCANNNNNTGG 2 cut(s) 973, 1181
XspI CTAG 2 cut(s) 609, 923
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.