Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr12

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Reverse (-)

19709654 .. 19710732

Gene Structure 1079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD12G1122600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGCAAATGTCCAGTTTTACTGTATCTGAGGATGCCGGATGTGCTAGTAGTGTCCTTACGGAGGAGCAGGACCCACATTCCGAAGTGATGGACATGGATCAATTAGAAGCAGAACTTGAGTCTGAATTGCAAAAACTTCCATGGTGCGCTACGGATACTCCTCGCCATGAGGGATTGAGTAATCTGGGTGAGGACATTGTCTCTGAGGTTACAGCTCAAGGGTTTCATGACCTAGAGGGACAGTGTTTTGTTACTCAGGAGTTCCATGGAGTATTGCCAGCTCAACTGGATCAGAAACTATGCCATGTGCTCATCGAACAGCAGGAAATCCAAATTGTGGAGCTGGAATCTGAACTGCTGTTCGATCAGCCCAATCAAAACTCCAACACAAAGAAACGGAACTGGAAACATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

138

Amino Acids

15.53

Weight (kDa)

4.29

Isoelectric Point (pI)

50.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	337
AclWI	GGATC	2 cut(s)	105, 297
AfiI	CCNNNNNNNGG	2 cut(s)	61, 337
AluBI	AGCT	3 cut(s)	215, 281, 343
AluI	AGCT	3 cut(s)	215, 281, 343
Alw21I	GWGCWC	1 cut(s)	312
Alw26I	GTCTC	1 cut(s)	205
AlwI	GGATC	2 cut(s)	105, 297
AspLEI	GCGC	1 cut(s)	149
AspS9I	GGNCC	1 cut(s)	70
AsuHPI	GGTGA	1 cut(s)	200
AvaII	GGWCC	1 cut(s)	70
Bbv12I	GWGCWC	1 cut(s)	312
BccI	CCATC	1 cut(s)	82
BciVI	GTATCC	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	205
BfaI	CTAG	2 cut(s)	45, 233
BfuI	GTATCC	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	70
BmgT120I	GGNCC	1 cut(s)	70
BmiI	GGNNCC	1 cut(s)	72
BmsI	GCATC	1 cut(s)	22
BpuEI	CTTGAG	2 cut(s)	137, 201
BsaJI	CCNNGG	2 cut(s)	140, 265
BsaXI	ACNNNNNCTCC	2 cut(s)	142, 172
Bsc4I	CCNNNNNNNGG	2 cut(s)	61, 337
Bse1I	ACTGG	3 cut(s)	12, 291, 407
BseDI	CCNNGG	2 cut(s)	140, 265
BseGI	GGATG	2 cut(s)	37, 44
BseLI	CCNNNNNNNGG	2 cut(s)	61, 337
BseMII	CTCAG	3 cut(s)	18, 195, 269
BseNI	ACTGG	3 cut(s)	12, 291, 407
BseRI	GAGGAG	2 cut(s)	77, 150
BsiHKAI	GWGCWC	1 cut(s)	312
BsiSI	CCGG	1 cut(s)	36
BslFI	GGGAC	1 cut(s)	252
BslI	CCNNNNNNNGG	2 cut(s)	61, 337
BsmAI	GTCTC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	252
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp143I	GATC	3 cut(s)	97, 289, 364
Bsp19I	CCATGG	2 cut(s)	140, 265
BspCNI	CTCAG	3 cut(s)	19, 196, 268
BspHI	TCATGA	1 cut(s)	226
BspLI	GGNNCC	1 cut(s)	72
BspPI	GGATC	2 cut(s)	105, 297
BsrI	ACTGG	3 cut(s)	12, 291, 407
BssECI	CCNNGG	2 cut(s)	140, 265
BssMI	GATC	3 cut(s)	97, 289, 364
BssT1I	CCWWGG	2 cut(s)	140, 265
Bst4CI	ACNGT	2 cut(s)	22, 243
BstC8I	GCNNGC	1 cut(s)	279
BstDEI	CTNAG	3 cut(s)	27, 204, 255
BstDSI	CCRYGG	2 cut(s)	140, 265
BstENI	CCTNNNNNAGG	1 cut(s)	59
BstF5I	GGATG	2 cut(s)	37, 44
BstHHI	GCGC	1 cut(s)	149
BstKTI	GATC	3 cut(s)	100, 292, 367
BstMAI	GTCTC	1 cut(s)	205
BstMBI	GATC	3 cut(s)	97, 289, 364
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BsuI	GTATCC	1 cut(s)	148
BtgI	CCRYGG	2 cut(s)	140, 265
BtsCI	GGATG	2 cut(s)	37, 44
BtsIMutI	CAGTG	1 cut(s)	248
Cac8I	GCNNGC	1 cut(s)	279
CciI	TCATGA	1 cut(s)	226
CfoI	GCGC	1 cut(s)	149
Cfr13I	GGNCC	1 cut(s)	70
CviAII	CATG	6 cut(s)	94, 141, 167, 227, 266, 305
CviJI	RGCY	4 cut(s)	215, 281, 343, 370
CviKI_1	RGCY	4 cut(s)	215, 281, 343, 370
DdeI	CTNAG	3 cut(s)	27, 204, 255
DpnI	GATC	3 cut(s)	99, 291, 366
DpnII	GATC	3 cut(s)	97, 289, 364
Eco130I	CCWWGG	2 cut(s)	140, 265
Eco47I	GGWCC	1 cut(s)	70
EcoNI	CCTNNNNNAGG	1 cut(s)	59
EcoO109I	RGGNCCY	1 cut(s)	70
EcoT14I	CCWWGG	2 cut(s)	140, 265
ErhI	CCWWGG	2 cut(s)	140, 265
FaeI	CATG	6 cut(s)	97, 144, 170, 230, 269, 308
FaiI	YATR	7 cut(s)	95, 142, 168, 228, 267, 301, 306
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FaqI	GGGAC	1 cut(s)	252
FatI	CATG	6 cut(s)	93, 140, 166, 226, 265, 304
FokI	GGATG	2 cut(s)	44, 51
FspBI	CTAG	2 cut(s)	45, 233
GlaI	GCGC	1 cut(s)	148
HapII	CCGG	1 cut(s)	36
HhaI	GCGC	1 cut(s)	149
Hin1II	CATG	6 cut(s)	97, 144, 170, 230, 269, 308
Hin6I	GCGC	1 cut(s)	147
HinP1I	GCGC	1 cut(s)	147
HinfI	GANTC	2 cut(s)	119, 347
HpaII	CCGG	1 cut(s)	36
HphI	GGTGA	1 cut(s)	200
Hpy188I	TCNGA	6 cut(s)	28, 82, 124, 205, 294, 352
Hpy188III	TCNNGA	2 cut(s)	227, 257
HpyCH4III	ACNGT	2 cut(s)	22, 243
HpyCH4V	TGCA	2 cut(s)	4, 130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	27, 204, 255
Hsp92II	CATG	6 cut(s)	97, 144, 170, 230, 269, 308
HspAI	GCGC	1 cut(s)	147
Kzo9I	GATC	3 cut(s)	97, 289, 364
LmnI	GCTCC	2 cut(s)	64, 340
LweI	GCATC	1 cut(s)	22
MaeI	CTAG	2 cut(s)	45, 233
MaeIII	GTNAC	2 cut(s)	208, 250
MalI	GATC	3 cut(s)	99, 291, 366
MboI	GATC	3 cut(s)	97, 289, 364
MhlI	GDGCHC	1 cut(s)	312
MluCI	AATT	3 cut(s)	101, 125, 333
MlyI	GAGTC	1 cut(s)	128
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	7 cut(s)	22, 55, 163, 171, 184, 199, 229
MspI	CCGG	1 cut(s)	36
MwoI	GCNNNNNNNGC	1 cut(s)	41
NcoI	CCATGG	2 cut(s)	140, 265
NdeII	GATC	3 cut(s)	97, 289, 364
NlaIII	CATG	6 cut(s)	97, 144, 170, 230, 269, 308
NlaIV	GGNNCC	1 cut(s)	72
PagI	TCATGA	1 cut(s)	226
PfeI	GAWTC	1 cut(s)	347
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	337
PleI	GAGTC	1 cut(s)	127
PpsI	GAGTC	1 cut(s)	127
PpuMI	RGGWCCY	1 cut(s)	70
Psp5II	RGGWCCY	1 cut(s)	70
PspN4I	GGNNCC	1 cut(s)	72
PspPI	GGNCC	1 cut(s)	70
PspPPI	RGGWCCY	1 cut(s)	70
PsyI	GACNNNGTC	1 cut(s)	197
Sau3AI	GATC	3 cut(s)	97, 289, 364
Sau96I	GGNCC	1 cut(s)	70
SchI	GAGTC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	312
SetI	ASST	5 cut(s)	210, 217, 234, 283, 345
SfaNI	GCATC	1 cut(s)	22
SinI	GGWCC	1 cut(s)	70
SmlI	CTYRAG	2 cut(s)	116, 216
SmoI	CTYRAG	2 cut(s)	116, 216
Sse9I	AATT	3 cut(s)	101, 125, 333
SspMI	CTAG	2 cut(s)	45, 233
StyI	CCWWGG	2 cut(s)	140, 265
TaaI	ACNGT	2 cut(s)	22, 243
TaqI	TCGA	2 cut(s)	315, 363
TasI	AATT	3 cut(s)	101, 125, 333
TfiI	GAWTC	1 cut(s)	347
TscAI	CASTG	1 cut(s)	248
TspDTI	ATGAA	1 cut(s)	215
TspGWI	ACGGA	3 cut(s)	74, 167, 412
TspRI	CASTG	1 cut(s)	248
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	337
VpaK11BI	GGWCC	1 cut(s)	70
XagI	CCTNNNNNAGG	1 cut(s)	59
XspI	CTAG	2 cut(s)	45, 233

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.