Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Forward (+)

23921895 .. 23925720

Gene Structure 3826 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G240300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTGGCAAGCGGTTTTTGCGGCAGCAGTAGCAGCCTCCACCGGGCTGCTTGCCAAAAATCACATATTCAACTTCAAACCCGCCACCGATTCCGATCCCACCACCGATCACAATGCGGAGCCCCACCCAAACCCTAACCCTAACCTCTCCATCGCTTCCGCATTTCAGTCTGAGCTGCCTCCCTGGGAGATCAGCGACTGCGAGGAGCAACCAGAAGGGACGATCTTTAGGTTTTCGAGCGAGGGTCGGGGCGAGAGTGGGACCCGGTTTCGCTTGAGAAGGGGGGCCCGGTCGAAGAAGAAGAAAGGGGTTGGTGTTGAGGATGAGAGATCTAATGGTGCGGAACAGAGGAGGACTGCTAGGAAAGTTGGCGTTTGCTTGAAGAAGAGGAAGACTGGGAAGAGTGTAGCTGCTGCCAAATGTGGATCGTCTTCTTCCGCAGATACCTCCTTATTTAGTTGGGGACTTAATGTTGGGATCATGTACATGATGTCTGCTGGAAAAGCTGAGATCAATAAGCTGAACACAGCCATGGATGAGACTGCAAGAATTGTACATGAATTAAAATCGGAGCTTCATAAAAGAAAATCACCACAAAAGCTGCAAGCTTCAGGTTCTGCTAGTGAAGACAGTATGAACGATCAGACAACTAATTACAAGCTTACTCATCCAGGACTAAACAAGTCAAGTTCAGAAAACAGAGGCCCCAATGATATGAGAATTTCCAGTTTTCCTGTATCTGATGGCGAATGTGCAAGTAGTGTTCTTACGGAGGAGCAGGAGCCAGGGCCAGAAGTTATGGACATGGATCAATTGGAAGCAGAACTTGAGTCTGAACTTCAAAAACTTCCATGGTGCATCACAGAAGCTCCTCGCCAAGAGGGATTGAGTAATCTGGGTGAGGATATTGTCCCTGAGCTAGAGGGACAGGGTGTTGATACCCAGCAGTTCCATGGAGTATTGCCAGCTCAACTAGATCAGAAACTATGCCATGTGCTCATCGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCTGAACTTCACTCAGCCCAATCAAAACTCCAAGAGAAAGAAACTGAACTTCAATCATTGAAGGACTGCGTTAGACGCCTGACCGAGTTATCTCTTTCAAATGTCTCAGATGATGAAACCGAGGCACGCAATGGACAAGAGCAAGCCACTGATTGGAATTACAACATGCAGAGATCTGAGTCAACAAAACCAACGGTTGGGATGAAGAGACCCTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

418

Amino Acids

46.05

Weight (kDa)

5.24

Isoelectric Point (pI)

56.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	3 cut(s)	1024, 1188, 1232
AciI	CCGC	7 cut(s)	11, 20, 81, 116, 159, 341, 438
AclWI	GGATC	4 cut(s)	89, 433, 485, 816
AcsI	RAATTY	1 cut(s)	720
AcuI	CTGAAG	1 cut(s)	594
AcyI	GRCGYC	1 cut(s)	1111
AfaI	GTAC	2 cut(s)	485, 555
AfiI	CCNNNNNNNGG	4 cut(s)	42, 1024, 1188, 1232
AgsI	TTSAA	7 cut(s)	70, 76, 382, 842, 1088, 1096, 1134
AjnI	CCWGG	3 cut(s)	182, 670, 784
Alw21I	GWGCWC	1 cut(s)	999
Alw26I	GTCTC	3 cut(s)	533, 1144, 1237
AlwI	GGATC	4 cut(s)	89, 433, 485, 816
AlwNI	CAGNNNCTG	2 cut(s)	198, 617
AoxI	GGCC	3 cut(s)	285, 703, 788
ApaI	GGGCCC	1 cut(s)	289
ApeKI	GCWGC	7 cut(s)	23, 32, 46, 175, 410, 413, 601
ApoI	RAATTY	1 cut(s)	720
AspS9I	GGNCC	5 cut(s)	261, 285, 286, 704, 788
AsuC2I	CCSGG	3 cut(s)	43, 265, 289
AsuHPI	GGTGA	2 cut(s)	582, 911
AvaII	GGWCC	1 cut(s)	261
BaeGI	GKGCMC	1 cut(s)	289
BanII	GRGCYC	2 cut(s)	123, 289
BbsI	GAAGAC	3 cut(s)	398, 423, 633
Bbv12I	GWGCWC	1 cut(s)	999
BbvI	GCAGC	7 cut(s)	33, 35, 44, 162, 397, 400, 588
BccI	CCATC	2 cut(s)	158, 737
BcgI	CGANNNNNNTGC	2 cut(s)	95, 129
BciT130I	CCWGG	3 cut(s)	184, 672, 786
BcnI	CCSGG	3 cut(s)	43, 265, 289
BcoDI	GTCTC	3 cut(s)	533, 1144, 1237
BfaI	CTAG	4 cut(s)	360, 621, 920, 974
BglII	AGATCT	2 cut(s)	329, 1208
BisI	GCNGC	8 cut(s)	21, 24, 33, 47, 176, 411, 414, 602
BlsI	GCNGC	8 cut(s)	22, 25, 34, 48, 177, 412, 415, 603
Bme1390I	CCNGG	6 cut(s)	43, 184, 265, 289, 672, 786
Bme18I	GGWCC	1 cut(s)	261
BmgT120I	GGNCC	5 cut(s)	261, 285, 286, 704, 788
BmiI	GGNNCC	7 cut(s)	120, 262, 263, 286, 287, 706, 783
BmrFI	CCNGG	6 cut(s)	43, 184, 265, 289, 672, 786
BmrI	ACTGGG	1 cut(s)	405
BmsI	GCATC	1 cut(s)	867
BmuI	ACTGGG	1 cut(s)	405
BpiI	GAAGAC	3 cut(s)	398, 423, 633
Bpu10I	CCTNAGC	1 cut(s)	915
BpuEI	CTTGAG	2 cut(s)	295, 848
BpuMI	CCSGG	3 cut(s)	43, 265, 289
BsaBI	GATNNNNATC	1 cut(s)	93
BsaHI	GRCGYC	1 cut(s)	1111
BsaI	GGTCTC	1 cut(s)	1237
BsaJI	CCNNGG	7 cut(s)	182, 183, 531, 785, 851, 952, 1155
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	4 cut(s)	42, 1024, 1188, 1232
Bse1I	ACTGG	2 cut(s)	400, 726
Bse3DI	GCAATG	1 cut(s)	1171
Bse8I	GATNNNNATC	1 cut(s)	93
BseBI	CCWGG	3 cut(s)	184, 672, 786
BseDI	CCNNGG	7 cut(s)	182, 183, 531, 785, 851, 952, 1155
BseGI	GGATG	4 cut(s)	328, 541, 667, 1242
BseJI	GATNNNNATC	1 cut(s)	93
BseLI	CCNNNNNNNGG	4 cut(s)	42, 1024, 1188, 1232
BseMI	GCAATG	1 cut(s)	1171
BseMII	CTCAG	6 cut(s)	162, 498, 906, 1062, 1155, 1203
BseNI	ACTGG	2 cut(s)	400, 726
BseRI	GAGGAG	4 cut(s)	218, 364, 788, 861
BseSI	GKGCMC	1 cut(s)	289
BseXI	GCAGC	7 cut(s)	33, 35, 44, 162, 397, 400, 588
BseYI	CCCAGC	1 cut(s)	942
Bsh1285I	CGRYCG	1 cut(s)	293
BshFI	GGCC	3 cut(s)	287, 705, 790
BsiEI	CGRYCG	1 cut(s)	293
BsiHKAI	GWGCWC	1 cut(s)	999
BsiSI	CCGG	3 cut(s)	42, 265, 289
BslFI	GGGAC	5 cut(s)	232, 274, 477, 896, 939
BslI	CCNNNNNNNGG	4 cut(s)	42, 1024, 1188, 1232
BsmAI	GTCTC	3 cut(s)	533, 1144, 1237
BsmFI	GGGAC	5 cut(s)	232, 274, 477, 896, 939
BsnI	GGCC	3 cut(s)	287, 705, 790
Bso31I	GGTCTC	1 cut(s)	1237
Bsp120I	GGGCCC	1 cut(s)	285
Bsp1286I	GDGCHC	3 cut(s)	123, 289, 999
Bsp1407I	TGTACA	2 cut(s)	483, 553
Bsp19I	CCATGG	3 cut(s)	531, 851, 952
BspACI	CCGC	7 cut(s)	11, 20, 81, 116, 159, 341, 438
BspANI	GGCC	3 cut(s)	287, 705, 790
BspCNI	CTCAG	6 cut(s)	163, 499, 907, 1061, 1154, 1204
BspLI	GGNNCC	7 cut(s)	120, 262, 263, 286, 287, 706, 783
BspPI	GGATC	4 cut(s)	89, 433, 485, 816
BspTNI	GGTCTC	1 cut(s)	1237
BsrDI	GCAATG	1 cut(s)	1171
BsrGI	TGTACA	2 cut(s)	483, 553
BsrI	ACTGG	2 cut(s)	400, 726
BssECI	CCNNGG	7 cut(s)	182, 183, 531, 785, 851, 952, 1155
BssNI	GRCGYC	1 cut(s)	1111
BssT1I	CCWWGG	3 cut(s)	531, 851, 952
Bst2UI	CCWGG	3 cut(s)	184, 672, 786
Bst4CI	ACNGT	2 cut(s)	632, 1231
Bst6I	CTCTTC	3 cut(s)	380, 395, 1235
BstACI	GRCGYC	1 cut(s)	1111
BstAUI	TGTACA	2 cut(s)	483, 553
BstC8I	GCNNGC	6 cut(s)	9, 51, 606, 966, 1162, 1179
BstDEI	CTNAG	6 cut(s)	171, 507, 915, 1048, 1141, 1212
BstDSI	CCRYGG	3 cut(s)	531, 851, 952
BstF5I	GGATG	4 cut(s)	328, 541, 667, 1242
BstMAI	GTCTC	3 cut(s)	533, 1144, 1237
BstMCI	CGRYCG	1 cut(s)	293
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 503, 1110
BstNI	CCWGG	3 cut(s)	184, 672, 786
BstNSI	RCATGY	1 cut(s)	1204
BstSCI	CCNGG	6 cut(s)	41, 182, 263, 287, 670, 784
BstSLI	GKGCMC	1 cut(s)	289
BstV1I	GCAGC	7 cut(s)	33, 35, 44, 162, 397, 400, 588
BstV2I	GAAGAC	3 cut(s)	398, 423, 633
BstX2I	RGATCY	2 cut(s)	329, 1208
BstYI	RGATCY	2 cut(s)	329, 1208
BsuRI	GGCC	3 cut(s)	287, 705, 790
BtgI	CCRYGG	3 cut(s)	531, 851, 952
BtgZI	GCGATG	1 cut(s)	136
BtsCI	GGATG	4 cut(s)	328, 541, 667, 1242
BtsIMutI	CAGTG	1 cut(s)	1182
Cac8I	GCNNGC	6 cut(s)	9, 51, 606, 966, 1162, 1179
CaiI	CAGNNNCTG	2 cut(s)	198, 617
Cfr13I	GGNCC	5 cut(s)	261, 285, 286, 704, 788
CseI	GACGC	1 cut(s)	1119
Csp6I	GTAC	2 cut(s)	484, 554
CviAII	CATG	9 cut(s)	481, 487, 532, 557, 805, 852, 953, 992, 1201
CviQI	GTAC	2 cut(s)	484, 554
DdeI	CTNAG	6 cut(s)	171, 507, 915, 1048, 1141, 1212
Eam1104I	CTCTTC	3 cut(s)	380, 395, 1235
EarI	CTCTTC	3 cut(s)	380, 395, 1235
Eco130I	CCWWGG	3 cut(s)	531, 851, 952
Eco24I	GRGCYC	2 cut(s)	123, 289
Eco31I	GGTCTC	1 cut(s)	1237
Eco47I	GGWCC	1 cut(s)	261
Eco57I	CTGAAG	1 cut(s)	594
EcoO109I	RGGNCCY	3 cut(s)	261, 285, 704
EcoRII	CCWGG	3 cut(s)	182, 670, 784
EcoT14I	CCWWGG	3 cut(s)	531, 851, 952
EcoT38I	GRGCYC	2 cut(s)	123, 289
ErhI	CCWWGG	3 cut(s)	531, 851, 952
FaeI	CATG	9 cut(s)	484, 490, 535, 560, 808, 855, 956, 995, 1204
FalI	AAGNNNNNCTT	2 cut(s)	810, 842
FaqI	GGGAC	5 cut(s)	232, 274, 477, 896, 939
FatI	CATG	9 cut(s)	480, 486, 531, 556, 804, 851, 952, 991, 1200
FauI	CCCGC	1 cut(s)	88
Fnu4HI	GCNGC	8 cut(s)	21, 24, 33, 47, 176, 411, 414, 602
FokI	GGATG	4 cut(s)	335, 548, 654, 1249
FriOI	GRGCYC	2 cut(s)	123, 289
Fsp4HI	GCNGC	8 cut(s)	21, 24, 33, 47, 176, 411, 414, 602
FspBI	CTAG	4 cut(s)	360, 621, 920, 974
GluI	GCNGC	8 cut(s)	21, 24, 33, 47, 176, 411, 414, 602
GsaI	CCCAGC	1 cut(s)	946
HaeIII	GGCC	3 cut(s)	287, 705, 790
HapII	CCGG	3 cut(s)	42, 265, 289
HgaI	GACGC	1 cut(s)	1119
Hin1I	GRCGYC	1 cut(s)	1111
Hin1II	CATG	9 cut(s)	484, 490, 535, 560, 808, 855, 956, 995, 1204
HincII	GTYRAC	1 cut(s)	1218
HindII	GTYRAC	1 cut(s)	1218
HindIII	AAGCTT	2 cut(s)	606, 659
HinfI	GANTC	4 cut(s)	89, 830, 1034, 1214
HpaII	CCGG	3 cut(s)	42, 265, 289
HphI	GGTGA	2 cut(s)	582, 911
Hpy166II	GTNNAC	1 cut(s)	1218
Hpy8I	GTNNAC	1 cut(s)	1218
HpyAV	CCTTC	3 cut(s)	209, 273, 1090
HpyCH4III	ACNGT	2 cut(s)	632, 1231
HpyCH4V	TGCA	5 cut(s)	545, 604, 755, 858, 1204
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 503, 1110
HpyF3I	CTNAG	6 cut(s)	171, 507, 915, 1048, 1141, 1212
Hsp92I	GRCGYC	1 cut(s)	1111
Hsp92II	CATG	9 cut(s)	484, 490, 535, 560, 808, 855, 956, 995, 1204
KflI	GGGWCCC	1 cut(s)	261
LmnI	GCTCC	7 cut(s)	118, 205, 571, 775, 781, 874, 1027
Lsp1109I	GCAGC	7 cut(s)	33, 35, 44, 162, 397, 400, 588
LweI	GCATC	1 cut(s)	867
MaeI	CTAG	4 cut(s)	360, 621, 920, 974
MfeI	CAATTG	1 cut(s)	812
MflI	RGATCY	2 cut(s)	329, 1208
MhlI	GDGCHC	3 cut(s)	123, 289, 999
MluCI	AATT	7 cut(s)	549, 560, 652, 720, 812, 1020, 1192
MlyI	GAGTC	2 cut(s)	839, 1223
MseI	TTAA	2 cut(s)	468, 563
MslI	CAYNNNNRTG	2 cut(s)	485, 530
MspI	CCGG	3 cut(s)	42, 265, 289
MspR9I	CCNGG	6 cut(s)	43, 184, 265, 289, 672, 786
MunI	CAATTG	1 cut(s)	812
MvaI	CCWGG	3 cut(s)	184, 672, 786
MwoI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 503, 1110
NciI	CCSGG	3 cut(s)	43, 265, 289
NcoI	CCATGG	3 cut(s)	531, 851, 952
NlaIII	CATG	9 cut(s)	484, 490, 535, 560, 808, 855, 956, 995, 1204
NlaIV	GGNNCC	7 cut(s)	120, 262, 263, 286, 287, 706, 783
NspI	RCATGY	1 cut(s)	1204
PasI	CCCWGGG	1 cut(s)	183
PfeI	GAWTC	2 cut(s)	89, 1034
PflMI	CCANNNNNTGG	3 cut(s)	1024, 1188, 1232
PfoI	TCCNGGA	1 cut(s)	670
PkrI	GCNGC	8 cut(s)	22, 25, 34, 48, 177, 412, 415, 603
PleI	GAGTC	2 cut(s)	838, 1222
PpsI	GAGTC	2 cut(s)	838, 1222
PpuMI	RGGWCCY	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	261
Psp6I	CCWGG	3 cut(s)	182, 670, 784
PspFI	CCCAGC	1 cut(s)	942
PspGI	CCWGG	3 cut(s)	182, 670, 784
PspN4I	GGNNCC	7 cut(s)	120, 262, 263, 286, 287, 706, 783
PspOMI	GGGCCC	1 cut(s)	285
PspPI	GGNCC	5 cut(s)	261, 285, 286, 704, 788
PspPPI	RGGWCCY	1 cut(s)	261
PstNI	CAGNNNCTG	2 cut(s)	198, 617
PsuI	RGATCY	2 cut(s)	329, 1208
RsaI	GTAC	2 cut(s)	485, 555
RsaNI	GTAC	2 cut(s)	484, 554
RseI	CAYNNNNRTG	2 cut(s)	485, 530
SaqAI	TTAA	2 cut(s)	468, 563
SatI	GCNGC	8 cut(s)	21, 24, 33, 47, 176, 411, 414, 602
Sau96I	GGNCC	5 cut(s)	261, 285, 286, 704, 788
SchI	GAGTC	2 cut(s)	839, 1223
ScrFI	CCNGG	6 cut(s)	43, 184, 265, 289, 672, 786
SduI	GDGCHC	3 cut(s)	123, 289, 999
SfaNI	GCATC	1 cut(s)	867
SinI	GGWCC	1 cut(s)	261
SmiMI	CAYNNNNRTG	2 cut(s)	485, 530
SmlI	CTYRAG	2 cut(s)	274, 827
SmoI	CTYRAG	2 cut(s)	274, 827
Sse9I	AATT	7 cut(s)	549, 560, 652, 720, 812, 1020, 1192
SsiI	CCGC	7 cut(s)	11, 20, 81, 116, 159, 341, 438
SspMI	CTAG	4 cut(s)	360, 621, 920, 974
StyD4I	CCNGG	6 cut(s)	41, 182, 263, 287, 670, 784
StyI	CCWWGG	3 cut(s)	531, 851, 952
TaaI	ACNGT	2 cut(s)	632, 1231
TaqI	TCGA	3 cut(s)	236, 293, 1002
TaqII	GACCGA	1 cut(s)	1133
TasI	AATT	7 cut(s)	549, 560, 652, 720, 812, 1020, 1192
TatI	WGTACW	2 cut(s)	483, 553
TauI	GCSGC	1 cut(s)	23
TfiI	GAWTC	2 cut(s)	89, 1034
Tru1I	TTAA	2 cut(s)	468, 563
Tru9I	TTAA	2 cut(s)	468, 563
TscAI	CASTG	1 cut(s)	1189
TseI	GCWGC	7 cut(s)	23, 32, 46, 175, 410, 413, 601
TspDTI	ATGAA	5 cut(s)	566, 573, 650, 1164, 1253
TspGWI	ACGGA	1 cut(s)	785
TspRI	CASTG	1 cut(s)	1189
Van91I	CCANNNNNTGG	3 cut(s)	1024, 1188, 1232
VpaK11BI	GGWCC	1 cut(s)	261
XapI	RAATTY	1 cut(s)	720
XceI	RCATGY	1 cut(s)	1204
XcmI	CCANNNNNNNNNTGG	1 cut(s)	950
XspI	CTAG	4 cut(s)	360, 621, 920, 974

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.