Rh3AG147800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0003917
Physical Location & Seq
Forward (+)
13038428 .. 13042310
3883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG147800.1

Sequence Viewer

Length: 1203 bp
ATGTGGCCGGCTCTCCTCGCCGCAGCAGTAGCCGCCTCCACCGGACTCCTCGCCAAAAACCACCTCTTCAAGCCCGCCGCCGAGATCACAGACTCCGATCCGCAGAACGACGCCGTCTCGGACGATGCGACGCCGCAGCGCTCCGTCGCTTCTGTTTCTCGGTCTCCGATGCTGCCGTGGGAGAGCGACTGCGAGGATCAAATGAAGGAGGGGATCTTTAGGTTTTCGAGCGACGGCGGGAGCGGGAAGAAGAAGAAGAAGAAGACCAGGTTTCGGTTGAAGAAGAAAGATGTGGTGGAGGAGCAGAAGAAGAAGAGTGGGAGGAGAGCTGGTGTTTGCTTGAAGAAGAGGAAGACTGTAGCTTCCAAATGTGGATCGTCTTCTGATTCCAAAGATACTAGCTCATTGTTTAGTTGGGGACTTAACATTGGGATCATGTACATGATGACTGCTGGAAAAGCGGAAATCAATAAGCTGAACACTACCATGGATGAGACTGCAAAAGTTGTGCAGGAGTTAAAATCTGAGCTAAATAAAAGAAAAGCATCACAGAGTCAGCAAGTTTCTTGTTCTGAAAGTGAAGCCAATACACAAGTTCAGAGCCCTAGTTGCAAGTGTACTCAGACAGAACTCAAGAAGTCAAGTGCAGAAAACAGTGAACCTAATTATATGAGAGCTTCCAGTTTTCATATATTTGATGATGGCGAATGTCCAAGTAGTGTTCTTACAGAGGATCAGGAGCCTGAGCCAGAGGTGATGGACATGGATCAATTGGAAGCAGAACTTGAGTCTGAACTGCAAAAACTTCCATGGTGCTCCACAGAAGCTCCTCATCAAGAGGGATTCAGAAATCTGGGAAAGGATATTGTCTCTGAAGTCTCAGCACAAAAATTTCAGGGACAAGCAGCTCAAGGTATTGATATCGAGCAATTTCAAGGAGTATTACCAGCTGAACTAGACCAGAAGTTATGCCATGTGCTCATCGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCCGAACTGCAGTCGGCCCAATCCAAACTCCAAGAAAAAGAAACTGAACTTCGAGCATTGAAGGACTGTGTTAAACGCCTAACTCAGTTATCCCTTTCAACTGTCTCAGGCAGGACTTCACCTCCTTTTAAGACCTTTCTCATTTTCCTTGCATTAATTCTCTACTCTACTTGGTTCCAGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

400

Amino Acids

44.38

Weight (kDa)

5.58

Isoelectric Point (pI)

63.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1006
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 461
AclWI GGATC 7 cut(s) 92, 204, 221, 382, 440, 741, 774
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 1 cut(s) 890
AcuI CTGAAG 1 cut(s) 894
AcyI GRCGYC 2 cut(s) 111, 131
AfaI GTAC 2 cut(s) 440, 619
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 2 cut(s) 273, 1006
AgsI TTSAA 6 cut(s) 70, 280, 343, 935, 1078, 1116
AjnI CCWGG 1 cut(s) 266
Alw21I GWGCWC 2 cut(s) 818, 981
Alw26I GTCTC 6 cut(s) 121, 168, 488, 874, 883, 1126
AlwI GGATC 7 cut(s) 92, 204, 221, 382, 440, 741, 774
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 5, 1032
ApeKI GCWGC 4 cut(s) 23, 136, 172, 905
ApoI RAATTY 1 cut(s) 890
AseI ATTAAT 1 cut(s) 1172
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 1033
AsuHPI GGTGA 2 cut(s) 766, 1128
BanII GRGCYC 1 cut(s) 605
BbsI GAAGAC 3 cut(s) 269, 359, 372
Bbv12I GWGCWC 2 cut(s) 818, 981
BbvI GCAGC 4 cut(s) 35, 148, 159, 917
BccI CCATC 2 cut(s) 695, 751
BceAI ACGGC 3 cut(s) 98, 160, 250
BciT130I CCWGG 1 cut(s) 268
BcoDI GTCTC 6 cut(s) 121, 168, 488, 874, 883, 1126
BfaI CTAG 3 cut(s) 399, 606, 956
BfmI CTRYAG 2 cut(s) 357, 1025
BfoI RGCGCY 1 cut(s) 142
BisI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 906
BlsI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 907
Bme1390I CCNGG 1 cut(s) 268
BmgT120I GGNCC 1 cut(s) 1033
BmiI GGNNCC 2 cut(s) 741, 1193
BmrFI CCNGG 1 cut(s) 268
BmsI GCATC 3 cut(s) 115, 159, 554
BpiI GAAGAC 3 cut(s) 269, 359, 372
Bpu10I CCTNAGC 1 cut(s) 744
BpuEI CTTGAG 3 cut(s) 617, 806, 894
BsaHI GRCGYC 2 cut(s) 111, 131
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 176, 486, 809
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 6 cut(s) 316, 346, 811, 841, 1123, 1153
Bsc4I CCNNNNNNNGG 2 cut(s) 273, 1006
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 681
BseBI CCWGG 1 cut(s) 268
BseDI CCNNGG 3 cut(s) 176, 486, 809
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 2 cut(s) 273, 1006
BseMII CTCAG 6 cut(s) 516, 635, 735, 894, 1115, 1137
BseNI ACTGG 1 cut(s) 681
BseRI GAGGAG 5 cut(s) 5, 38, 314, 337, 819
BseXI GCAGC 4 cut(s) 35, 148, 159, 917
BsgI GTGCAG 2 cut(s) 530, 666
BshFI GGCC 2 cut(s) 7, 1034
BsiHKAI GWGCWC 2 cut(s) 818, 981
BsiSI CCGG 2 cut(s) 8, 42
BslFI GGGAC 2 cut(s) 432, 912
BslI CCNNNNNNNGG 2 cut(s) 273, 1006
BsmAI GTCTC 6 cut(s) 121, 168, 488, 874, 883, 1126
BsmBI CGTCTC 1 cut(s) 121
BsmFI GGGAC 2 cut(s) 432, 912
BsnI GGCC 2 cut(s) 7, 1034
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 605, 818, 981
Bsp1407I TGTACA 1 cut(s) 438
Bsp143I GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
Bsp19I CCATGG 2 cut(s) 486, 809
BspACI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 461
BspANI GGCC 2 cut(s) 7, 1034
BspCNI CTCAG 6 cut(s) 517, 634, 736, 893, 1114, 1136
BspLI GGNNCC 2 cut(s) 741, 1193
BspMAI CTGCAG 1 cut(s) 1029
BspPI GGATC 7 cut(s) 92, 204, 221, 382, 440, 741, 774
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 438
BsrI ACTGG 1 cut(s) 681
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 3 cut(s) 176, 486, 809
BssMI GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
BssNI GRCGYC 2 cut(s) 111, 131
BssT1I CCWWGG 2 cut(s) 486, 809
Bst2UI CCWGG 1 cut(s) 268
Bst4CI ACNGT 4 cut(s) 358, 656, 1085, 1120
Bst6I CTCTTC 3 cut(s) 71, 308, 341
BstACI GRCGYC 2 cut(s) 111, 131
BstAUI TGTACA 1 cut(s) 438
BstC8I GCNNGC 2 cut(s) 9, 75
BstDEI CTNAG 6 cut(s) 525, 621, 744, 880, 1101, 1123
BstDSI CCRYGG 3 cut(s) 176, 486, 809
BstF5I GGATG 1 cut(s) 496
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstKTI GATC 8 cut(s) 87, 100, 199, 216, 377, 435, 736, 769
BstMAI GTCTC 6 cut(s) 121, 168, 488, 874, 883, 1126
BstMBI GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
BstMWI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 458, 609
BstNI CCWGG 1 cut(s) 268
BstSCI CCNGG 1 cut(s) 266
BstSFI CTRYAG 2 cut(s) 357, 1025
BstV1I GCAGC 4 cut(s) 35, 148, 159, 917
BstV2I GAAGAC 3 cut(s) 269, 359, 372
BstX2I RGATCY 1 cut(s) 213
BstYI RGATCY 1 cut(s) 213
BsuRI GGCC 2 cut(s) 7, 1034
BtgI CCRYGG 3 cut(s) 176, 486, 809
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 1 cut(s) 661
Cac8I GCNNGC 2 cut(s) 9, 75
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 1033
CseI GACGC 2 cut(s) 119, 139
CsiI ACCWGGT 1 cut(s) 266
Csp6I GTAC 2 cut(s) 439, 618
CviAII CATG 6 cut(s) 436, 442, 487, 763, 810, 974
CviQI GTAC 2 cut(s) 439, 618
DdeI CTNAG 6 cut(s) 525, 621, 744, 880, 1101, 1123
DpnI GATC 8 cut(s) 86, 99, 198, 215, 376, 434, 735, 768
DpnII GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 3 cut(s) 71, 308, 341
EarI CTCTTC 3 cut(s) 71, 308, 341
Eco130I CCWWGG 2 cut(s) 486, 809
Eco24I GRGCYC 1 cut(s) 605
Eco31I GGTCTC 1 cut(s) 168
Eco32I GATATC 1 cut(s) 922
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 894
EcoRII CCWGG 1 cut(s) 266
EcoRV GATATC 1 cut(s) 922
EcoT14I CCWWGG 2 cut(s) 486, 809
EcoT38I GRGCYC 1 cut(s) 605
ErhI CCWWGG 2 cut(s) 486, 809
Esp3I CGTCTC 1 cut(s) 121
FaeI CATG 6 cut(s) 439, 445, 490, 766, 813, 977
FalI AAGNNNNNCTT 2 cut(s) 768, 800
FaqI GGGAC 2 cut(s) 432, 912
FatI CATG 6 cut(s) 435, 441, 486, 762, 809, 973
FauI CCCGC 3 cut(s) 82, 230, 236
Fnu4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 906
FokI GGATG 1 cut(s) 503
FriOI GRGCYC 1 cut(s) 605
Fsp4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 906
FspBI CTAG 3 cut(s) 399, 606, 956
GlaI GCGC 1 cut(s) 140
GluI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 906
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 7, 1034
HapII CCGG 2 cut(s) 8, 42
HgaI GACGC 2 cut(s) 119, 139
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 111, 131
Hin1II CATG 6 cut(s) 439, 445, 490, 766, 813, 977
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 7 cut(s) 45, 92, 386, 553, 788, 843, 1016
HpaII CCGG 2 cut(s) 8, 42
HphI GGTGA 2 cut(s) 766, 1128
Hpy166II GTNNAC 2 cut(s) 618, 659
Hpy188III TCNNGA 4 cut(s) 634, 737, 836, 1195
Hpy8I GTNNAC 2 cut(s) 618, 659
Hpy99I CGWCG 4 cut(s) 113, 133, 149, 236
HpyAV CCTTC 2 cut(s) 199, 1072
HpyCH4III ACNGT 4 cut(s) 358, 656, 1085, 1120
HpyCH4V TGCA 7 cut(s) 500, 511, 612, 647, 799, 1027, 1169
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 458, 609
HpyF3I CTNAG 6 cut(s) 525, 621, 744, 880, 1101, 1123
Hsp92I GRCGYC 2 cut(s) 111, 131
Hsp92II CATG 6 cut(s) 439, 445, 490, 766, 813, 977
HspAI GCGC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Kzo9I GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
LmnI GCTCC 7 cut(s) 146, 240, 301, 739, 821, 832, 1009
Lsp1109I GCAGC 4 cut(s) 35, 148, 159, 917
LweI GCATC 3 cut(s) 115, 159, 554
MabI ACCWGGT 1 cut(s) 266
MaeI CTAG 3 cut(s) 399, 606, 956
MalI GATC 8 cut(s) 86, 99, 198, 215, 376, 434, 735, 768
MbiI CCGCTC 1 cut(s) 243
MboI GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
MfeI CAATTG 1 cut(s) 770
MflI RGATCY 1 cut(s) 213
MhlI GDGCHC 3 cut(s) 605, 818, 981
MluCI AATT 6 cut(s) 664, 770, 890, 929, 1002, 1173
MlyI GAGTC 4 cut(s) 39, 86, 562, 797
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 5 cut(s) 423, 518, 1089, 1146, 1172
MslI CAYNNNNRTG 2 cut(s) 440, 485
MspA1I CMGCKG 1 cut(s) 950
MspI CCGG 2 cut(s) 8, 42
MspR9I CCNGG 1 cut(s) 268
MunI CAATTG 1 cut(s) 770
MvaI CCWGG 1 cut(s) 268
MwoI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 458, 609
NaeI GCCGGC 1 cut(s) 9
NcoI CCATGG 2 cut(s) 486, 809
NdeII GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 439, 445, 490, 766, 813, 977
NlaIV GGNNCC 2 cut(s) 741, 1193
NmeAIII GCCGAG 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 386, 843, 1016
PflFI GACNNNGTC 1 cut(s) 113
PflMI CCANNNNNTGG 1 cut(s) 1006
PkrI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 907
PleI GAGTC 4 cut(s) 39, 86, 561, 796
PpsI GAGTC 4 cut(s) 39, 86, 561, 796
PshBI ATTAAT 1 cut(s) 1172
Psp6I CCWGG 1 cut(s) 266
PspGI CCWGG 1 cut(s) 266
PspN4I GGNNCC 2 cut(s) 741, 1193
PspPI GGNCC 1 cut(s) 1033
PstI CTGCAG 1 cut(s) 1029
PsuI RGATCY 1 cut(s) 213
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 2 cut(s) 440, 619
RsaNI GTAC 2 cut(s) 439, 618
RseI CAYNNNNRTG 2 cut(s) 440, 485
SaqAI TTAA 5 cut(s) 423, 518, 1089, 1146, 1172
SatI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 906
Sau3AI GATC 8 cut(s) 84, 97, 196, 213, 374, 432, 733, 766
Sau96I GGNCC 1 cut(s) 1033
SchI GAGTC 4 cut(s) 39, 86, 562, 797
ScrFI CCNGG 1 cut(s) 268
SduI GDGCHC 3 cut(s) 605, 818, 981
SexAI ACCWGGT 1 cut(s) 266
SfaNI GCATC 3 cut(s) 115, 159, 554
SfcI CTRYAG 2 cut(s) 357, 1025
SmiMI CAYNNNNRTG 2 cut(s) 440, 485
SmlI CTYRAG 3 cut(s) 632, 785, 909
SmoI CTYRAG 3 cut(s) 632, 785, 909
Sse9I AATT 6 cut(s) 664, 770, 890, 929, 1002, 1173
SsiI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 461
SspMI CTAG 3 cut(s) 399, 606, 956
StyD4I CCNGG 1 cut(s) 266
StyI CCWWGG 2 cut(s) 486, 809
TaaI ACNGT 4 cut(s) 358, 656, 1085, 1120
TaqI TCGA 4 cut(s) 227, 924, 984, 1069
TaqII GACCGA 1 cut(s) 150
TasI AATT 6 cut(s) 664, 770, 890, 929, 1002, 1173
TatI WGTACW 2 cut(s) 438, 617
TauI GCSGC 4 cut(s) 23, 35, 80, 136
TfiI GAWTC 3 cut(s) 386, 843, 1016
Tru1I TTAA 5 cut(s) 423, 518, 1089, 1146, 1172
Tru9I TTAA 5 cut(s) 423, 518, 1089, 1146, 1172
TscAI CASTG 1 cut(s) 661
TseI GCWGC 4 cut(s) 23, 136, 172, 905
TspDTI ATGAA 2 cut(s) 218, 677
TspGWI ACGGA 1 cut(s) 133
TspRI CASTG 1 cut(s) 661
Tth111I GACNNNGTC 1 cut(s) 113
Van91I CCANNNNNTGG 1 cut(s) 1006
VspI ATTAAT 1 cut(s) 1172
XapI RAATTY 1 cut(s) 890
XspI CTAG 3 cut(s) 399, 606, 956
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.