Rh5DG238800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
Physical Location & Seq
Forward (+)
27312319 .. 27315525
3207 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG238800.1

Sequence Viewer

Length: 291 bp
ATGCCCGCCGCCGAGATCACGGACTCTGATCCGCAAAACAACGCTGTCTTAGACGATGTGACTTCACTGCTCTCCGTCGCTTCTGTTTCTCGGTCTCTGGTGCTGCTGTGGGAGAGCGACTGTGAGGATCAGGTCAAGGAGGGGATCGTTAGGTTTTCGACCGATGGCGGGAGTGGCGAGAAGAAGAAAAAGACAAGGTTTTGGTTGAAGAAGAAGGGAGTAGTTAATAATGTTACTAAGAACTTGGGTGATGATTCCATCTTAAAGGCCTTGAGGTATTTCTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.63

Weight (kDa)

6.22

Isoelectric Point (pI)

35.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 6, 9, 32, 168
AclWI GGATC 3 cut(s) 23, 135, 152
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 3 cut(s) 23, 135, 152
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 103
AsuHPI GGTGA 1 cut(s) 260
BbvI GCAGC 1 cut(s) 90
BccI CCATC 2 cut(s) 158, 266
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 289
BisI GCNGC 2 cut(s) 9, 104
BlsI GCNGC 2 cut(s) 10, 105
BsaI GGTCTC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 90
Bsh1285I CGRYCG 1 cut(s) 162
BshFI GGCC 1 cut(s) 269
BsiEI CGRYCG 1 cut(s) 162
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 15, 28, 127, 144
BspACI CCGC 4 cut(s) 6, 9, 32, 168
BspANI GGCC 1 cut(s) 269
BspPI GGATC 3 cut(s) 23, 135, 152
BspTNI GGTCTC 1 cut(s) 99
BssMI GATC 4 cut(s) 15, 28, 127, 144
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 1 cut(s) 6
BstDEI CTNAG 2 cut(s) 49, 237
BstKTI GATC 4 cut(s) 18, 31, 130, 147
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 4 cut(s) 15, 28, 127, 144
BstMCI CGRYCG 1 cut(s) 162
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstV1I GCAGC 1 cut(s) 90
BsuRI GGCC 1 cut(s) 269
BtsI GCAGTG 1 cut(s) 65
BtsIMutI CAGTG 1 cut(s) 65
Cac8I GCNNGC 1 cut(s) 6
CviJI RGCY 1 cut(s) 269
CviKI_1 RGCY 1 cut(s) 269
DdeI CTNAG 2 cut(s) 49, 237
DpnI GATC 4 cut(s) 17, 30, 129, 146
DpnII GATC 4 cut(s) 15, 28, 127, 144
Eco147I AGGCCT 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 99
FauI CCCGC 2 cut(s) 13, 161
Fnu4HI GCNGC 2 cut(s) 9, 104
Fsp4HI GCNGC 2 cut(s) 9, 104
FspBI CTAG 1 cut(s) 289
GluI GCNGC 2 cut(s) 9, 104
HaeIII GGCC 1 cut(s) 269
HinfI GANTC 2 cut(s) 23, 254
HphI GGTGA 1 cut(s) 260
Hpy188I TCNGA 1 cut(s) 28
Hpy99I CGWCG 1 cut(s) 80
HpyAV CCTTC 1 cut(s) 208
HpyCH4III ACNGT 1 cut(s) 122
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 49, 237
Kzo9I GATC 4 cut(s) 15, 28, 127, 144
LpnPI CCDG 2 cut(s) 83, 116
Lsp1109I GCAGC 1 cut(s) 90
MaeI CTAG 1 cut(s) 289
MaeIII GTNAC 2 cut(s) 58, 232
MalI GATC 4 cut(s) 17, 30, 129, 146
MboI GATC 4 cut(s) 15, 28, 127, 144
MboII GAAGA 4 cut(s) 193, 196, 220, 223
MlyI GAGTC 1 cut(s) 17
MnlI CCTC 3 cut(s) 118, 133, 267
MseI TTAA 2 cut(s) 225, 263
MwoI GCNNNNNNNGC 1 cut(s) 174
NdeII GATC 4 cut(s) 15, 28, 127, 144
NmeAIII GCCGAG 1 cut(s) 37
NmuCI GTSAC 1 cut(s) 58
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 254
PkrI GCNGC 2 cut(s) 10, 105
PleI GAGTC 1 cut(s) 17
PpsI GAGTC 1 cut(s) 17
PsrI GAACNNNNNNTAC 1 cut(s) 269
SaqAI TTAA 2 cut(s) 225, 263
SatI GCNGC 2 cut(s) 9, 104
Sau3AI GATC 4 cut(s) 15, 28, 127, 144
SchI GAGTC 1 cut(s) 17
SetI ASST 4 cut(s) 135, 155, 200, 278
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 4 cut(s) 6, 9, 32, 168
SspMI CTAG 1 cut(s) 289
StuI AGGCCT 1 cut(s) 269
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 2 cut(s) 81, 176
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 225, 263
Tru9I TTAA 2 cut(s) 225, 263
TscAI CASTG 1 cut(s) 72
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 1 cut(s) 103
Tsp45I GTSAC 1 cut(s) 58
TspGWI ACGGA 2 cut(s) 35, 64
TspRI CASTG 1 cut(s) 72
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.