Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Reverse (-)

14659314 .. 14660974

Gene Structure 1661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12130.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGTGGCAATTATTTGCCGCAACTGTTGCGGCCTCCACCGGACTCCTCGCCGGAAAACACATCTTCTTCAAACCCACCGCCGTTCCCGATCACAATGCGGAGCCTCCCCGTCCAGACCCCAATAACCCCTCCGCCGCCTCGCCATTTCAGTCTCAGCCGCCTCCGTGGGAGATCAACGACTTCGAGGAGCAGCGAGAAGGGACCATCTTTAGGTTTTCGAGCGAGGCGGCGTCGGGTCGGGGCAGGAGTGGGACCCAGTTTCTGATGAGGATGAAAACCGGTTCAACCGGGTCGAAGAAGAAGAAAGGGGTTGATGCTGAGGCTGAGAGATCTAATGGTGTGGAACAGAGGAGGACTGCTAGGAGAGGGGTTGGTGTTTGCTTGAAGAGGAGGAAAACTGGGAAGAATGTAGCTGCTGCCAAATGTGGATCGTCTTCTTCCAAAGATTCGACGTTATTTAGTTGGGGGCTTAATGTTGGGATCGATGTACGTGATGTCTGCTGGAAAAGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

18.46

Weight (kDa)

10.08

Isoelectric Point (pI)

47.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	18, 29, 78, 98, 132, 135, 158, 227
AclWI	GGATC	2 cut(s)	436, 488
AcyI	GRCGYC	1 cut(s)	230
AfaI	GTAC	1 cut(s)	489
AfiI	CCNNNNNNNGG	1 cut(s)	210
AgeI	ACCGGT	1 cut(s)	278
AgsI	TTSAA	3 cut(s)	70, 285, 385
AluBI	AGCT	2 cut(s)	413, 510
AluI	AGCT	2 cut(s)	413, 510
Alw26I	GTCTC	1 cut(s)	156
AlwI	GGATC	2 cut(s)	436, 488
AlwNI	CAGNNNCTG	1 cut(s)	262
AoxI	GGCC	1 cut(s)	30
ApeKI	GCWGC	3 cut(s)	190, 413, 416
AsiGI	ACCGGT	1 cut(s)	278
AspS9I	GGNCC	2 cut(s)	201, 252
AsuC2I	CCSGG	1 cut(s)	289
AvaII	GGWCC	2 cut(s)	201, 252
BbsI	GAAGAC	1 cut(s)	426
BbvCI	CCTCAGC	1 cut(s)	318
BbvI	GCAGC	3 cut(s)	202, 400, 403
BccI	CCATC	1 cut(s)	212
BceAI	ACGGC	1 cut(s)	65
BcgI	CGANNNNNNTGC	2 cut(s)	77, 111
BcnI	CCSGG	1 cut(s)	289
BcoDI	GTCTC	1 cut(s)	156
BfaI	CTAG	1 cut(s)	360
BglII	AGATCT	1 cut(s)	329
BisI	GCNGC	8 cut(s)	18, 30, 135, 158, 191, 228, 414, 417
BlsI	GCNGC	8 cut(s)	19, 31, 136, 159, 192, 229, 415, 418
Bme1390I	CCNGG	1 cut(s)	289
Bme18I	GGWCC	2 cut(s)	201, 252
BmgT120I	GGNCC	2 cut(s)	201, 252
BmiI	GGNNCC	4 cut(s)	102, 202, 253, 254
BmrFI	CCNGG	1 cut(s)	289
BmrI	ACTGGG	2 cut(s)	250, 408
BmsI	GCATC	1 cut(s)	304
BmuI	ACTGGG	2 cut(s)	250, 408
BpiI	GAAGAC	1 cut(s)	426
Bpu10I	CCTNAGC	1 cut(s)	318
BpuMI	CCSGG	1 cut(s)	289
Bsa29I	ATCGAT	1 cut(s)	483
BsaAI	YACGTR	1 cut(s)	491
BsaHI	GRCGYC	1 cut(s)	230
BsaJI	CCNNGG	1 cut(s)	164
BsaWI	WCCGGW	2 cut(s)	38, 278
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	1 cut(s)	278
Bse1I	ACTGG	2 cut(s)	256, 403
BseCI	ATCGAT	1 cut(s)	483
BseDI	CCNNGG	1 cut(s)	164
BseGI	GGATG	1 cut(s)	276
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	3 cut(s)	167, 309, 315
BseNI	ACTGG	2 cut(s)	256, 403
BseRI	GAGGAG	4 cut(s)	35, 200, 364, 403
BseXI	GCAGC	3 cut(s)	202, 400, 403
BshFI	GGCC	1 cut(s)	32
BshTI	ACCGGT	1 cut(s)	278
BshVI	ATCGAT	1 cut(s)	483
BsiSI	CCGG	4 cut(s)	39, 51, 279, 288
BslFI	GGGAC	2 cut(s)	214, 265
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	1 cut(s)	156
BsmFI	GGGAC	2 cut(s)	214, 265
BsnI	GGCC	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	88, 171, 329, 428, 480
BspACI	CCGC	8 cut(s)	18, 29, 78, 98, 132, 135, 158, 227
BspANI	GGCC	1 cut(s)	32
BspCNI	CTCAG	3 cut(s)	166, 310, 316
BspDI	ATCGAT	1 cut(s)	483
BspLI	GGNNCC	4 cut(s)	102, 202, 253, 254
BspPI	GGATC	2 cut(s)	436, 488
BsrFI	RCCGGY	1 cut(s)	278
BsrI	ACTGG	2 cut(s)	256, 403
BssAI	RCCGGY	1 cut(s)	278
BssECI	CCNNGG	1 cut(s)	164
BssMI	GATC	5 cut(s)	88, 171, 329, 428, 480
BssNI	GRCGYC	1 cut(s)	230
Bst4CI	ACNGT	1 cut(s)	25
Bst6I	CTCTTC	1 cut(s)	380
BstACI	GRCGYC	1 cut(s)	230
BstAPI	GCANNNNNTGC	1 cut(s)	26
BstBAI	YACGTR	1 cut(s)	491
BstDEI	CTNAG	3 cut(s)	153, 318, 324
BstDSI	CCRYGG	1 cut(s)	164
BstF5I	GGATG	1 cut(s)	276
BstKTI	GATC	5 cut(s)	91, 174, 332, 431, 483
BstMAI	GTCTC	1 cut(s)	156
BstMBI	GATC	5 cut(s)	88, 171, 329, 428, 480
BstMWI	GCNNNNNNNGC	2 cut(s)	26, 507
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	202, 400, 403
BstV2I	GAAGAC	1 cut(s)	426
BstX2I	RGATCY	1 cut(s)	329
BstYI	RGATCY	1 cut(s)	329
Bsu15I	ATCGAT	1 cut(s)	483
BsuRI	GGCC	1 cut(s)	32
BsuTUI	ATCGAT	1 cut(s)	483
BtgI	CCRYGG	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	276
CaiI	CAGNNNCTG	1 cut(s)	262
Cfr10I	RCCGGY	1 cut(s)	278
Cfr13I	GGNCC	2 cut(s)	201, 252
ClaI	ATCGAT	1 cut(s)	483
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	488
CspAI	ACCGGT	1 cut(s)	278
CviJI	RGCY	7 cut(s)	32, 103, 157, 323, 413, 469, 510
CviKI_1	RGCY	7 cut(s)	32, 103, 157, 323, 413, 469, 510
CviQI	GTAC	1 cut(s)	488
DdeI	CTNAG	3 cut(s)	153, 318, 324
DpnI	GATC	5 cut(s)	90, 173, 331, 430, 482
DpnII	GATC	5 cut(s)	88, 171, 329, 428, 480
Eam1104I	CTCTTC	1 cut(s)	380
EarI	CTCTTC	1 cut(s)	380
EciI	GGCGGA	1 cut(s)	121
Eco47I	GGWCC	2 cut(s)	201, 252
EcoO109I	RGGNCCY	1 cut(s)	252
FaqI	GGGAC	2 cut(s)	214, 265
Fnu4HI	GCNGC	8 cut(s)	18, 30, 135, 158, 191, 228, 414, 417
FokI	GGATG	1 cut(s)	283
Fsp4HI	GCNGC	8 cut(s)	18, 30, 135, 158, 191, 228, 414, 417
FspBI	CTAG	1 cut(s)	360
GluI	GCNGC	8 cut(s)	18, 30, 135, 158, 191, 228, 414, 417
HaeIII	GGCC	1 cut(s)	32
HapII	CCGG	4 cut(s)	39, 51, 279, 288
HgaI	GACGC	1 cut(s)	219
Hin1I	GRCGYC	1 cut(s)	230
HinfI	GANTC	2 cut(s)	42, 446
HpaII	CCGG	4 cut(s)	39, 51, 279, 288
Hpy188I	TCNGA	1 cut(s)	264
Hpy188III	TCNNGA	2 cut(s)	86, 113
Hpy99I	CGWCG	2 cut(s)	235, 454
HpyAV	CCTTC	1 cut(s)	191
HpyCH4III	ACNGT	1 cut(s)	25
HpyCH4IV	ACGT	2 cut(s)	452, 490
HpyF10VI	GCNNNNNNNGC	2 cut(s)	26, 507
HpyF3I	CTNAG	3 cut(s)	153, 318, 324
HpySE526I	ACGT	2 cut(s)	452, 490
Hsp92I	GRCGYC	1 cut(s)	230
KflI	GGGWCCC	1 cut(s)	252
Kzo9I	GATC	5 cut(s)	88, 171, 329, 428, 480
LmnI	GCTCC	2 cut(s)	100, 187
LpnPI	CCDG	9 cut(s)	52, 64, 126, 229, 269, 292, 301, 384, 487
Lsp1109I	GCAGC	3 cut(s)	202, 400, 403
LweI	GCATC	1 cut(s)	304
MaeI	CTAG	1 cut(s)	360
MaeII	ACGT	2 cut(s)	452, 490
MalI	GATC	5 cut(s)	90, 173, 331, 430, 482
MboI	GATC	5 cut(s)	88, 171, 329, 428, 480
MboII	GAAGA	9 cut(s)	55, 58, 307, 310, 313, 397, 415, 426, 429
MflI	RGATCY	1 cut(s)	329
MluCI	AATT	1 cut(s)	8
MlyI	GAGTC	1 cut(s)	36
MseI	TTAA	1 cut(s)	471
MspI	CCGG	4 cut(s)	39, 51, 279, 288
MspR9I	CCNGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	2 cut(s)	26, 507
NciI	CCSGG	1 cut(s)	289
NdeII	GATC	5 cut(s)	88, 171, 329, 428, 480
NlaIV	GGNNCC	4 cut(s)	102, 202, 253, 254
PfeI	GAWTC	1 cut(s)	446
PinAI	ACCGGT	1 cut(s)	278
PkrI	GCNGC	8 cut(s)	19, 31, 136, 159, 192, 229, 415, 418
PleI	GAGTC	1 cut(s)	36
PpsI	GAGTC	1 cut(s)	36
Ppu21I	YACGTR	1 cut(s)	491
PpuMI	RGGWCCY	1 cut(s)	252
Psp5II	RGGWCCY	1 cut(s)	252
PspN4I	GGNNCC	4 cut(s)	102, 202, 253, 254
PspPI	GGNCC	2 cut(s)	201, 252
PspPPI	RGGWCCY	1 cut(s)	252
PstNI	CAGNNNCTG	1 cut(s)	262
PsuI	RGATCY	1 cut(s)	329
RsaI	GTAC	1 cut(s)	489
RsaNI	GTAC	1 cut(s)	488
SaqAI	TTAA	1 cut(s)	471
SatI	GCNGC	8 cut(s)	18, 30, 135, 158, 191, 228, 414, 417
Sau3AI	GATC	5 cut(s)	88, 171, 329, 428, 480
Sau96I	GGNCC	2 cut(s)	201, 252
SchI	GAGTC	1 cut(s)	36
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	5 cut(s)	215, 415, 455, 493, 512
SfaNI	GCATC	1 cut(s)	304
SinI	GGWCC	2 cut(s)	201, 252
Sse9I	AATT	1 cut(s)	8
SsiI	CCGC	8 cut(s)	18, 29, 78, 98, 132, 135, 158, 227
SspMI	CTAG	1 cut(s)	360
StyD4I	CCNGG	1 cut(s)	287
TaaI	ACNGT	1 cut(s)	25
TaiI	ACGT	2 cut(s)	455, 493
TaqI	TCGA	5 cut(s)	183, 218, 293, 449, 483
TasI	AATT	1 cut(s)	8
TauI	GCSGC	5 cut(s)	20, 32, 137, 160, 230
TfiI	GAWTC	1 cut(s)	446
Tru1I	TTAA	1 cut(s)	471
Tru9I	TTAA	1 cut(s)	471
TseI	GCWGC	3 cut(s)	190, 413, 416
TspDTI	ATGAA	1 cut(s)	287
TspGWI	ACGGA	1 cut(s)	153
VpaK11BI	GGWCC	2 cut(s)	201, 252
XspI	CTAG	1 cut(s)	360

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.