Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001639.1

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Reverse (-)

171 .. 2009

Gene Structure 1839 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001639.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atgtggccggctctcctcgccgcagcagtcgccgcctccaccggactcctcgccaaaaaccacctcttcaagcccgccgccgagatcaccgactccgatccgcagaacgacgccgtctcggacgatgcgacgccgcagcgctccgtcgcttctgtttctcggtctccggtcctgccgtgggagagcgactgcgaggatcaaatgaaggaggggatctttaggttttcgagcgacggcgggagcgggaagaagaagaagaagaagaagaccaggtttcggttgaagaagaaagatgtggtggaggagcagaagaagaagagtgggaggagagctggtgtttgcttgaagaagaggaagactgtagcttccaaatgtggatcgtcttctgattccaaagatactagctcattgtttagttggggacttaacattgggatcatgtacatgatgactgctggaaaagcggaaatcaataagctgaacacaaccatggatgagactgcaaaagttgtgcaggagttaaaatctgagctaaataaaagaaaagcatcacagagtcagcaagtttcttgttctgaaagtgaagccaatacacaagttcagagccctagttgcaagcgtactcagacagaactcaagaagtcaagtgcagaaaacagtgaacctaattatatgagagcttccagttttcatatatttgatgatggcgaatgtccaagtagtgttcttacagaggatcaggagcctgagccagaggtgatggacatggatcaattggaagcagaacttgagtctgaactgcaaaaacttccatggtgctccacagaagctcctcatcaagagggattcagaaatctgggaaaggtcagtctttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

291

Amino Acids

32.1

Weight (kDa)

7.52

Isoelectric Point (pI)

64.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	243
AciI	CCGC	9 cut(s)	21, 33, 75, 78, 101, 134, 237, 243, 464
AclWI	GGATC	7 cut(s)	92, 204, 221, 385, 443, 744, 777
AcoI	YGGCCR	1 cut(s)	5
AcyI	GRCGYC	2 cut(s)	111, 131
AfaI	GTAC	2 cut(s)	443, 622
AfeI	AGCGCT	1 cut(s)	140
AfiI	CCNNNNNNNGG	2 cut(s)	178, 276
AgsI	TTSAA	3 cut(s)	70, 283, 346
AjnI	CCWGG	1 cut(s)	269
AluBI	AGCT	7 cut(s)	332, 365, 405, 478, 532, 680, 830
AluI	AGCT	7 cut(s)	332, 365, 405, 478, 532, 680, 830
Alw21I	GWGCWC	1 cut(s)	821
Alw26I	GTCTC	3 cut(s)	121, 168, 491
AlwI	GGATC	7 cut(s)	92, 204, 221, 385, 443, 744, 777
Aor51HI	AGCGCT	1 cut(s)	140
AoxI	GGCC	1 cut(s)	5
ApeKI	GCWGC	2 cut(s)	23, 136
AspLEI	GCGC	1 cut(s)	141
AspS9I	GGNCC	1 cut(s)	169
AsuHPI	GGTGA	2 cut(s)	79, 769
AvaII	GGWCC	1 cut(s)	169
BanII	GRGCYC	1 cut(s)	608
BbsI	GAAGAC	3 cut(s)	272, 362, 375
Bbv12I	GWGCWC	1 cut(s)	821
BbvI	GCAGC	2 cut(s)	35, 148
BccI	CCATC	2 cut(s)	698, 754
BceAI	ACGGC	3 cut(s)	98, 160, 250
BciT130I	CCWGG	1 cut(s)	271
BcoDI	GTCTC	3 cut(s)	121, 168, 491
BfaI	CTAG	2 cut(s)	402, 609
BfmI	CTRYAG	1 cut(s)	360
BfoI	RGCGCY	1 cut(s)	142
BisI	GCNGC	6 cut(s)	21, 24, 33, 78, 134, 137
BlsI	GCNGC	6 cut(s)	22, 25, 34, 79, 135, 138
Bme1390I	CCNGG	1 cut(s)	271
Bme18I	GGWCC	1 cut(s)	169
BmgT120I	GGNCC	1 cut(s)	169
BmiI	GGNNCC	1 cut(s)	744
BmrFI	CCNGG	1 cut(s)	271
BmsI	GCATC	2 cut(s)	115, 557
BpiI	GAAGAC	3 cut(s)	272, 362, 375
Bpu10I	CCTNAGC	1 cut(s)	747
BpuEI	CTTGAG	2 cut(s)	620, 809
BsaHI	GRCGYC	2 cut(s)	111, 131
BsaI	GGTCTC	1 cut(s)	168
BsaJI	CCNNGG	3 cut(s)	176, 489, 812
BsaWI	WCCGGW	2 cut(s)	41, 166
BsaXI	ACNNNNNCTCC	4 cut(s)	319, 349, 814, 844
Bsc4I	CCNNNNNNNGG	2 cut(s)	178, 276
Bse118I	RCCGGY	1 cut(s)	7
Bse1I	ACTGG	1 cut(s)	684
BseBI	CCWGG	1 cut(s)	271
BseDI	CCNNGG	3 cut(s)	176, 489, 812
BseGI	GGATG	1 cut(s)	499
BseLI	CCNNNNNNNGG	2 cut(s)	178, 276
BseMII	CTCAG	3 cut(s)	519, 638, 738
BseNI	ACTGG	1 cut(s)	684
BseRI	GAGGAG	5 cut(s)	5, 38, 317, 340, 822
BseXI	GCAGC	2 cut(s)	35, 148
BsgI	GTGCAG	2 cut(s)	533, 669
BshFI	GGCC	1 cut(s)	7
BsiHKAI	GWGCWC	1 cut(s)	821
BsiSI	CCGG	3 cut(s)	8, 42, 167
BslFI	GGGAC	1 cut(s)	435
BslI	CCNNNNNNNGG	2 cut(s)	178, 276
BsmAI	GTCTC	3 cut(s)	121, 168, 491
BsmBI	CGTCTC	1 cut(s)	121
BsmFI	GGGAC	1 cut(s)	435
BsnI	GGCC	1 cut(s)	7
Bso31I	GGTCTC	1 cut(s)	168
Bsp1286I	GDGCHC	2 cut(s)	608, 821
Bsp1407I	TGTACA	1 cut(s)	441
Bsp143I	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
Bsp19I	CCATGG	2 cut(s)	489, 812
BspACI	CCGC	9 cut(s)	21, 33, 75, 78, 101, 134, 237, 243, 464
BspANI	GGCC	1 cut(s)	7
BspCNI	CTCAG	3 cut(s)	520, 637, 739
BspLI	GGNNCC	1 cut(s)	744
BspPI	GGATC	7 cut(s)	92, 204, 221, 385, 443, 744, 777
BspTNI	GGTCTC	1 cut(s)	168
BsrBI	CCGCTC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	7
BsrGI	TGTACA	1 cut(s)	441
BsrI	ACTGG	1 cut(s)	684
BssAI	RCCGGY	1 cut(s)	7
BssECI	CCNNGG	3 cut(s)	176, 489, 812
BssMI	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
BssNI	GRCGYC	2 cut(s)	111, 131
BssT1I	CCWWGG	2 cut(s)	489, 812
Bst2UI	CCWGG	1 cut(s)	271
Bst4CI	ACNGT	2 cut(s)	361, 659
Bst6I	CTCTTC	3 cut(s)	71, 311, 344
BstACI	GRCGYC	2 cut(s)	111, 131
BstAUI	TGTACA	1 cut(s)	441
BstC8I	GCNNGC	3 cut(s)	9, 75, 617
BstDEI	CTNAG	3 cut(s)	528, 624, 747
BstDSI	CCRYGG	3 cut(s)	176, 489, 812
BstF5I	GGATG	1 cut(s)	499
BstH2I	RGCGCY	1 cut(s)	142
BstHHI	GCGC	1 cut(s)	141
BstKTI	GATC	8 cut(s)	87, 100, 199, 216, 380, 438, 739, 772
BstMAI	GTCTC	3 cut(s)	121, 168, 491
BstMBI	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
BstMWI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 461, 612
BstNI	CCWGG	1 cut(s)	271
BstSCI	CCNGG	1 cut(s)	269
BstSFI	CTRYAG	1 cut(s)	360
BstV1I	GCAGC	2 cut(s)	35, 148
BstV2I	GAAGAC	3 cut(s)	272, 362, 375
BstX2I	RGATCY	1 cut(s)	213
BstYI	RGATCY	1 cut(s)	213
BsuRI	GGCC	1 cut(s)	7
BtgI	CCRYGG	3 cut(s)	176, 489, 812
BtsCI	GGATG	1 cut(s)	499
BtsIMutI	CAGTG	1 cut(s)	664
Cac8I	GCNNGC	3 cut(s)	9, 75, 617
CfoI	GCGC	1 cut(s)	141
Cfr10I	RCCGGY	1 cut(s)	7
Cfr13I	GGNCC	1 cut(s)	169
CseI	GACGC	2 cut(s)	119, 139
CsiI	ACCWGGT	1 cut(s)	269
Csp6I	GTAC	2 cut(s)	442, 621
CviAII	CATG	5 cut(s)	439, 445, 490, 766, 813
CviQI	GTAC	2 cut(s)	442, 621
DdeI	CTNAG	3 cut(s)	528, 624, 747
DpnI	GATC	8 cut(s)	86, 99, 198, 215, 379, 437, 738, 771
DpnII	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
EaeI	YGGCCR	1 cut(s)	5
Eam1104I	CTCTTC	3 cut(s)	71, 311, 344
EarI	CTCTTC	3 cut(s)	71, 311, 344
Eco130I	CCWWGG	2 cut(s)	489, 812
Eco24I	GRGCYC	1 cut(s)	608
Eco31I	GGTCTC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	169
Eco47III	AGCGCT	1 cut(s)	140
EcoRII	CCWGG	1 cut(s)	269
EcoT14I	CCWWGG	2 cut(s)	489, 812
EcoT38I	GRGCYC	1 cut(s)	608
ErhI	CCWWGG	2 cut(s)	489, 812
Esp3I	CGTCTC	1 cut(s)	121
FaeI	CATG	5 cut(s)	442, 448, 493, 769, 816
FaiI	YATR	9 cut(s)	440, 446, 491, 672, 674, 693, 695, 767, 814
FalI	AAGNNNNNCTT	2 cut(s)	771, 803
FaqI	GGGAC	1 cut(s)	435
FatI	CATG	5 cut(s)	438, 444, 489, 765, 812
FauI	CCCGC	3 cut(s)	82, 230, 236
Fnu4HI	GCNGC	6 cut(s)	21, 24, 33, 78, 134, 137
FokI	GGATG	1 cut(s)	506
FriOI	GRGCYC	1 cut(s)	608
Fsp4HI	GCNGC	6 cut(s)	21, 24, 33, 78, 134, 137
FspBI	CTAG	2 cut(s)	402, 609
GlaI	GCGC	1 cut(s)	140
GluI	GCNGC	6 cut(s)	21, 24, 33, 78, 134, 137
HaeII	RGCGCY	1 cut(s)	142
HaeIII	GGCC	1 cut(s)	7
HapII	CCGG	3 cut(s)	8, 42, 167
HgaI	GACGC	2 cut(s)	119, 139
HhaI	GCGC	1 cut(s)	141
Hin1I	GRCGYC	2 cut(s)	111, 131
Hin1II	CATG	5 cut(s)	442, 448, 493, 769, 816
Hin6I	GCGC	1 cut(s)	139
HinP1I	GCGC	1 cut(s)	139
HinfI	GANTC	6 cut(s)	45, 92, 389, 556, 791, 846
HpaII	CCGG	3 cut(s)	8, 42, 167
HphI	GGTGA	2 cut(s)	79, 769
Hpy166II	GTNNAC	1 cut(s)	662
Hpy188I	TCNGA	9 cut(s)	97, 121, 388, 529, 577, 603, 627, 796, 851
Hpy188III	TCNNGA	3 cut(s)	637, 740, 839
Hpy8I	GTNNAC	1 cut(s)	662
Hpy99I	CGWCG	4 cut(s)	113, 133, 149, 236
HpyAV	CCTTC	1 cut(s)	199
HpyCH4III	ACNGT	2 cut(s)	361, 659
HpyCH4V	TGCA	5 cut(s)	503, 514, 615, 650, 802
HpyF10VI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 461, 612
HpyF3I	CTNAG	3 cut(s)	528, 624, 747
Hsp92I	GRCGYC	2 cut(s)	111, 131
Hsp92II	CATG	5 cut(s)	442, 448, 493, 769, 816
HspAI	GCGC	1 cut(s)	139
KroI	GCCGGC	1 cut(s)	7
KroNI	GCCGGC	1 cut(s)	9
Kzo9I	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
LmnI	GCTCC	6 cut(s)	146, 240, 304, 742, 824, 835
Lsp1109I	GCAGC	2 cut(s)	35, 148
LweI	GCATC	2 cut(s)	115, 557
MabI	ACCWGGT	1 cut(s)	269
MaeI	CTAG	2 cut(s)	402, 609
MalI	GATC	8 cut(s)	86, 99, 198, 215, 379, 437, 738, 771
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	213
MhlI	GDGCHC	2 cut(s)	608, 821
MluCI	AATT	2 cut(s)	667, 773
MlyI	GAGTC	4 cut(s)	39, 86, 565, 800
MroNI	GCCGGC	1 cut(s)	7
MseI	TTAA	3 cut(s)	426, 521, 874
MslI	CAYNNNNRTG	2 cut(s)	443, 488
MspI	CCGG	3 cut(s)	8, 42, 167
MspR9I	CCNGG	1 cut(s)	271
MunI	CAATTG	1 cut(s)	773
MvaI	CCWGG	1 cut(s)	271
MwoI	GCNNNNNNNGC	5 cut(s)	17, 29, 32, 461, 612
NaeI	GCCGGC	1 cut(s)	9
NcoI	CCATGG	2 cut(s)	489, 812
NdeII	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
NgoMIV	GCCGGC	1 cut(s)	7
NlaIII	CATG	5 cut(s)	442, 448, 493, 769, 816
NlaIV	GGNNCC	1 cut(s)	744
NmeAIII	GCCGAG	1 cut(s)	106
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PdiI	GCCGGC	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	389, 846
PflFI	GACNNNGTC	1 cut(s)	113
PkrI	GCNGC	6 cut(s)	22, 25, 34, 79, 135, 138
PleI	GAGTC	4 cut(s)	39, 86, 564, 799
PpsI	GAGTC	4 cut(s)	39, 86, 564, 799
Psp6I	CCWGG	1 cut(s)	269
PspGI	CCWGG	1 cut(s)	269
PspN4I	GGNNCC	1 cut(s)	744
PspPI	GGNCC	1 cut(s)	169
PsuI	RGATCY	1 cut(s)	213
PsyI	GACNNNGTC	1 cut(s)	113
RsaI	GTAC	2 cut(s)	443, 622
RsaNI	GTAC	2 cut(s)	442, 621
RseI	CAYNNNNRTG	2 cut(s)	443, 488
SaqAI	TTAA	3 cut(s)	426, 521, 874
SatI	GCNGC	6 cut(s)	21, 24, 33, 78, 134, 137
Sau3AI	GATC	8 cut(s)	84, 97, 196, 213, 377, 435, 736, 769
Sau96I	GGNCC	1 cut(s)	169
SchI	GAGTC	4 cut(s)	39, 86, 565, 800
ScrFI	CCNGG	1 cut(s)	271
SduI	GDGCHC	2 cut(s)	608, 821
SexAI	ACCWGGT	1 cut(s)	269
SfaNI	GCATC	2 cut(s)	115, 557
SfcI	CTRYAG	1 cut(s)	360
SinI	GGWCC	1 cut(s)	169
SmiMI	CAYNNNNRTG	2 cut(s)	443, 488
SmlI	CTYRAG	2 cut(s)	635, 788
SmoI	CTYRAG	2 cut(s)	635, 788
Sse9I	AATT	2 cut(s)	667, 773
SsiI	CCGC	9 cut(s)	21, 33, 75, 78, 101, 134, 237, 243, 464
SspMI	CTAG	2 cut(s)	402, 609
StyD4I	CCNGG	1 cut(s)	269
StyI	CCWWGG	2 cut(s)	489, 812
TaaI	ACNGT	2 cut(s)	361, 659
TaqI	TCGA	1 cut(s)	227
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	2 cut(s)	667, 773
TatI	WGTACW	1 cut(s)	441
TauI	GCSGC	4 cut(s)	23, 35, 80, 136
TfiI	GAWTC	2 cut(s)	389, 846
Tru1I	TTAA	3 cut(s)	426, 521, 874
Tru9I	TTAA	3 cut(s)	426, 521, 874
TscAI	CASTG	1 cut(s)	664
TseI	GCWGC	2 cut(s)	23, 136
TspDTI	ATGAA	2 cut(s)	218, 680
TspGWI	ACGGA	1 cut(s)	133
TspRI	CASTG	1 cut(s)	664
Tth111I	GACNNNGTC	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	169
XspI	CTAG	2 cut(s)	402, 609

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.