Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000326.1

Orthogroup ID

OG0003917

Physical Location & Seq

Genomic Coordinates Reverse (-)

55669 .. 56948

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000326.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 813 bp

atgtacatgatgactgctggaaaagcggaaatcaataagctgaacacaaccatggatgagactgcaaaagttgtgcaggagttaaaatctgagctaaataaaagaaaagcatcacagagtcagcaagtttcttgttctgaaagtgaagccaatacacaagttcagagccctagttgcaagcgtactcagacagaactcaagaagtcaagtgcagaaaacagtgaacctaattatatgagagcttccagttttcatatatttgatgatggcgaatgtccaagtagtgttcttacagaggatcaggagcctgagccagaggtgatggacatggatcaattggaagcagaacttgagtctgaactgcaaaagcttccatggtgctccacagaagctccccatcaagagggattcagaaatctgggaaaggatattgtctctgaagtctcagcacaaaaatttcagggacaagcagctcaaggtattgatatcgagcaatttcaaggagtattaccagctgaactagaccagaagttatgccatgtgctcatcgaacagcaggaaagccaaattgtggagctggaatccgaactgcagtcggcccaatccaaactccaagaaaaagaaactgaacttcaagcattgaaggactgtgttaaacgcctaactcagttatccctttcaactgtctcagatgatgaaaatgaggctcacaatgaacaagagcagatcactggttggaattacaacacggagagatctgagtcaataaaaccagtggttgggatgaaaagacctatagattctgaatcctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

270

Amino Acids

30.36

Weight (kDa)

4.51

Isoelectric Point (pI)

77.7

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003917)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G09730 AT3G09730 AT3G09730
fragaria_vesca	FvH4_6g15500
malus_domestica	MD04G1102800.v1.1 MD04G1105400.v1.1 MD12G1122600.v1.1
prunus_persica	Prupe.6G240300_v2.0.a1
pyrus_communis	pycom04g09790 pycom12g12130
rosa_chinensis	RchiOBHm_Chr3g0469001 RchiOBHm_Chr5g0015291
rosa_laevigata	RLG00000001459 RLG00000024392
rosa_multiflora	Rmu_co8286187.1_g000001 Rmu_co8500389.1_g000002 Rmu_sc0000326.1_g000009 Rmu_sc0001639.1_g000001
rosa_roxburghii	Rroxscaffold_6G00412380
rosa_rugosa	Rorug03G0098200 Rorug03G0098300 Rorug04G0163800 Rorug07G0218400
rosa_samantha	Rh3AG147800 Rh3BG170400 Rh3BG279500 Rh3BG372900 Rh3DG204600 Rh5CG129300 Rh5CG196300 Rh5CG272700 Rh5DG238800 Rh6CG165900
rosa_wichuraiana	Rw3G013920

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	2 cut(s)	571, 779
AciI	CCGC	1 cut(s)	26
AclWI	GGATC	2 cut(s)	306, 339
AcsI	RAATTY	1 cut(s)	455
AcuI	CTGAAG	1 cut(s)	459
AfaI	GTAC	2 cut(s)	5, 184
AfiI	CCNNNNNNNGG	3 cut(s)	403, 571, 779
AgsI	TTSAA	4 cut(s)	500, 635, 643, 681
AluBI	AGCT	8 cut(s)	40, 94, 242, 370, 392, 473, 515, 577
AluI	AGCT	8 cut(s)	40, 94, 242, 370, 392, 473, 515, 577
Alw21I	GWGCWC	2 cut(s)	383, 546
Alw26I	GTCTC	4 cut(s)	53, 439, 448, 691
AlwI	GGATC	2 cut(s)	306, 339
AoxI	GGCC	1 cut(s)	597
ApeKI	GCWGC	1 cut(s)	470
ApoI	RAATTY	1 cut(s)	455
AspS9I	GGNCC	1 cut(s)	598
AsuHPI	GGTGA	1 cut(s)	331
BanII	GRGCYC	1 cut(s)	170
Bbv12I	GWGCWC	2 cut(s)	383, 546
BbvI	GCAGC	1 cut(s)	482
BccI	CCATC	3 cut(s)	260, 316, 405
BcoDI	GTCTC	4 cut(s)	53, 439, 448, 691
BfaI	CTAG	2 cut(s)	171, 521
BfmI	CTRYAG	2 cut(s)	590, 795
BglII	AGATCT	1 cut(s)	755
BisI	GCNGC	1 cut(s)	471
BlsI	GCNGC	1 cut(s)	472
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	306
BmsI	GCATC	1 cut(s)	119
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	3 cut(s)	182, 371, 459
BsaJI	CCNNGG	2 cut(s)	51, 374
BsaXI	ACNNNNNCTCC	2 cut(s)	376, 406
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 571, 779
Bse1I	ACTGG	3 cut(s)	246, 736, 773
BseDI	CCNNGG	2 cut(s)	51, 374
BseGI	GGATG	2 cut(s)	61, 789
BseLI	CCNNNNNNNGG	3 cut(s)	403, 571, 779
BseMII	CTCAG	7 cut(s)	81, 200, 300, 459, 680, 702, 750
BseNI	ACTGG	3 cut(s)	246, 736, 773
BseXI	GCAGC	1 cut(s)	482
BsgI	GTGCAG	2 cut(s)	95, 231
BshFI	GGCC	1 cut(s)	599
BsiHKAI	GWGCWC	2 cut(s)	383, 546
BslFI	GGGAC	1 cut(s)	477
BslI	CCNNNNNNNGG	3 cut(s)	403, 571, 779
BsmAI	GTCTC	4 cut(s)	53, 439, 448, 691
BsmFI	GGGAC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	599
Bsp1286I	GDGCHC	3 cut(s)	170, 383, 546
Bsp1407I	TGTACA	1 cut(s)	3
Bsp143I	GATC	4 cut(s)	298, 331, 726, 755
Bsp19I	CCATGG	2 cut(s)	51, 374
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	599
BspCNI	CTCAG	7 cut(s)	82, 199, 301, 458, 679, 701, 751
BspLI	GGNNCC	1 cut(s)	306
BspMAI	CTGCAG	1 cut(s)	594
BspPI	GGATC	2 cut(s)	306, 339
BsrGI	TGTACA	1 cut(s)	3
BsrI	ACTGG	3 cut(s)	246, 736, 773
BssECI	CCNNGG	2 cut(s)	51, 374
BssMI	GATC	4 cut(s)	298, 331, 726, 755
BssT1I	CCWWGG	2 cut(s)	51, 374
Bst4CI	ACNGT	3 cut(s)	221, 650, 685
BstAUI	TGTACA	1 cut(s)	3
BstC8I	GCNNGC	1 cut(s)	179
BstDEI	CTNAG	7 cut(s)	90, 186, 309, 445, 666, 688, 759
BstDSI	CCRYGG	2 cut(s)	51, 374
BstF5I	GGATG	2 cut(s)	61, 789
BstKTI	GATC	4 cut(s)	301, 334, 729, 758
BstMAI	GTCTC	4 cut(s)	53, 439, 448, 691
BstMBI	GATC	4 cut(s)	298, 331, 726, 755
BstMWI	GCNNNNNNNGC	2 cut(s)	23, 174
BstSFI	CTRYAG	2 cut(s)	590, 795
BstV1I	GCAGC	1 cut(s)	482
BstX2I	RGATCY	1 cut(s)	755
BstYI	RGATCY	1 cut(s)	755
BsuRI	GGCC	1 cut(s)	599
BtgI	CCRYGG	2 cut(s)	51, 374
BtsCI	GGATG	2 cut(s)	61, 789
BtsIMutI	CAGTG	3 cut(s)	226, 729, 780
Cac8I	GCNNGC	1 cut(s)	179
Cfr13I	GGNCC	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	4, 183
CviAII	CATG	5 cut(s)	7, 52, 328, 375, 539
CviQI	GTAC	2 cut(s)	4, 183
DdeI	CTNAG	7 cut(s)	90, 186, 309, 445, 666, 688, 759
DpnI	GATC	4 cut(s)	300, 333, 728, 757
DpnII	GATC	4 cut(s)	298, 331, 726, 755
Eco130I	CCWWGG	2 cut(s)	51, 374
Eco24I	GRGCYC	1 cut(s)	170
Eco32I	GATATC	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	459
EcoRV	GATATC	1 cut(s)	487
EcoT14I	CCWWGG	2 cut(s)	51, 374
EcoT38I	GRGCYC	1 cut(s)	170
ErhI	CCWWGG	2 cut(s)	51, 374
FaeI	CATG	5 cut(s)	10, 55, 331, 378, 542
FalI	AAGNNNNNCTT	2 cut(s)	333, 365
FaqI	GGGAC	1 cut(s)	477
FatI	CATG	5 cut(s)	6, 51, 327, 374, 538
Fnu4HI	GCNGC	1 cut(s)	471
FokI	GGATG	2 cut(s)	68, 796
FriOI	GRGCYC	1 cut(s)	170
Fsp4HI	GCNGC	1 cut(s)	471
FspBI	CTAG	2 cut(s)	171, 521
GluI	GCNGC	1 cut(s)	471
HaeIII	GGCC	1 cut(s)	599
Hin1II	CATG	5 cut(s)	10, 55, 331, 378, 542
HindIII	AAGCTT	1 cut(s)	368
HinfI	GANTC	7 cut(s)	118, 353, 408, 581, 761, 800, 806
HphI	GGTGA	1 cut(s)	331
Hpy166II	GTNNAC	1 cut(s)	224
Hpy188III	TCNNGA	4 cut(s)	199, 302, 401, 810
Hpy8I	GTNNAC	1 cut(s)	224
HpyAV	CCTTC	1 cut(s)	637
HpyCH4III	ACNGT	3 cut(s)	221, 650, 685
HpyCH4V	TGCA	6 cut(s)	65, 76, 177, 212, 364, 592
HpyF10VI	GCNNNNNNNGC	2 cut(s)	23, 174
HpyF3I	CTNAG	7 cut(s)	90, 186, 309, 445, 666, 688, 759
Hsp92II	CATG	5 cut(s)	10, 55, 331, 378, 542
Kzo9I	GATC	4 cut(s)	298, 331, 726, 755
LmnI	GCTCC	4 cut(s)	304, 386, 397, 574
Lsp1109I	GCAGC	1 cut(s)	482
LweI	GCATC	1 cut(s)	119
MaeI	CTAG	2 cut(s)	171, 521
MalI	GATC	4 cut(s)	300, 333, 728, 757
MboI	GATC	4 cut(s)	298, 331, 726, 755
MfeI	CAATTG	1 cut(s)	335
MflI	RGATCY	1 cut(s)	755
MhlI	GDGCHC	3 cut(s)	170, 383, 546
MluCI	AATT	6 cut(s)	229, 335, 455, 494, 567, 739
MlyI	GAGTC	3 cut(s)	127, 362, 770
MmeI	TCCRAC	1 cut(s)	716
MnlI	CCTC	4 cut(s)	289, 310, 397, 697
MseI	TTAA	2 cut(s)	83, 654
MslI	CAYNNNNRTG	1 cut(s)	50
MspA1I	CMGCKG	1 cut(s)	515
MunI	CAATTG	1 cut(s)	335
MwoI	GCNNNNNNNGC	2 cut(s)	23, 174
NcoI	CCATGG	2 cut(s)	51, 374
NdeII	GATC	4 cut(s)	298, 331, 726, 755
NlaIII	CATG	5 cut(s)	10, 55, 331, 378, 542
NlaIV	GGNNCC	1 cut(s)	306
PfeI	GAWTC	4 cut(s)	408, 581, 800, 806
PflMI	CCANNNNNTGG	2 cut(s)	571, 779
PkrI	GCNGC	1 cut(s)	472
PleI	GAGTC	3 cut(s)	126, 361, 769
PpsI	GAGTC	3 cut(s)	126, 361, 769
PspN4I	GGNNCC	1 cut(s)	306
PspPI	GGNCC	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	594
PsuI	RGATCY	1 cut(s)	755
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	2 cut(s)	5, 184
RsaNI	GTAC	2 cut(s)	4, 183
RseI	CAYNNNNRTG	1 cut(s)	50
SaqAI	TTAA	2 cut(s)	83, 654
SatI	GCNGC	1 cut(s)	471
Sau3AI	GATC	4 cut(s)	298, 331, 726, 755
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	3 cut(s)	127, 362, 770
SduI	GDGCHC	3 cut(s)	170, 383, 546
SfaNI	GCATC	1 cut(s)	119
SfcI	CTRYAG	2 cut(s)	590, 795
SmiMI	CAYNNNNRTG	1 cut(s)	50
SmlI	CTYRAG	3 cut(s)	197, 350, 474
SmoI	CTYRAG	3 cut(s)	197, 350, 474
Sse9I	AATT	6 cut(s)	229, 335, 455, 494, 567, 739
SsiI	CCGC	1 cut(s)	26
SspMI	CTAG	2 cut(s)	171, 521
StyI	CCWWGG	2 cut(s)	51, 374
TaaI	ACNGT	3 cut(s)	221, 650, 685
TaqI	TCGA	2 cut(s)	489, 549
TasI	AATT	6 cut(s)	229, 335, 455, 494, 567, 739
TatI	WGTACW	1 cut(s)	3
TfiI	GAWTC	4 cut(s)	408, 581, 800, 806
Tru1I	TTAA	2 cut(s)	83, 654
Tru9I	TTAA	2 cut(s)	83, 654
TscAI	CASTG	3 cut(s)	226, 736, 780
TseI	GCWGC	1 cut(s)	470
TspDTI	ATGAA	4 cut(s)	242, 711, 729, 800
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	226, 736, 780
Van91I	CCANNNNNTGG	2 cut(s)	571, 779
XapI	RAATTY	1 cut(s)	455
XspI	CTAG	2 cut(s)	171, 521

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.