Rh3DG204600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0003917
Physical Location & Seq
Reverse (-)
18690235 .. 18694254
4020 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG204600.1

Sequence Viewer

Length: 1245 bp
ATGTGGCCGGCTCTCCTCGCCGCAGCAGTCGCCGCCTCCACCGGACTCCTCGCCAAAAACCACCTCTTCAAGCCCGCCGCCGAGATCACCGACTCCGATCCGCAGAACGACGCCGTCTCGGACGATGCGACGCCGCAGCGCTCCGTCGCTTCTGTTTCTCGGTCTCCGATGCTGCCGTGGGAGAGCGACTGCGAGGATCAAATGAAGGAGGGGATCTTTAGGTTTTCGAGCGACGGCGGGAGCGGGAAGAAGAAGAAGAAGACCAGGTTTCGGTTGAAGAAGAAAGATGTGGTGGAGGAGCAGAAGAAGAAGAGTGGGAGGAGAGCTGGTGTTTGCTTGAAGAAGAGGAAGACTGTAGCTTCCAAATGTGGATCGTCTTCTGATTCCAAAGATACCAGCTCATTGTTTAGTTGGGGACTTAACATTGGGATCATGTACATGATGACTGCTGGAAAAGCGGAAATCAATAAGCTGAACACAACCATGGATGAGACTGCAAAAGTTGTGCAGGAGTTAAAATCTGAGCTAAATAAAAGAAAAGCATCACAGAGTCAGCAAGTTTCTTGTTCTGAAAGTGGAGCCAATACACAAGTTCAGAGCCCTAGTTGCAAGCGTACTCAGACAGAACTCAAGAAGTCAAGTGCAGAAAACAGTGAACCTAATTATATGAGAGCTTCCAGTTTTCATATATTTGATGATGGCGAATGTCCAAGTAGTGTTCTTACAGAGGATCAGGAGCCTGAGCCAGAGGTGATGGACATGGATCAATTGGAAGCAGAACTTGAGTCTGAACTGCAAAAACTTCCATGGTGCTCCACAGAAGCTCCTCATCAAGAGGAATTCAGAAATCTGGGAAAGGATATCGTCTCTGAAGTCTCAGCACAAAAATTTCAGGGACAAGCAGCTCAAGGTATTGATATCGAGCAATTTCAAGGAGTATTACCAGCTGAACTAGACCAGAAGTTATGCCATGTGCTCATCGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCCGAACTGCAGTCGGCCCAATCCAAACTCCAAGAAAAAGAAACTGAACTTCAAGCATTGAAGGACTGTGTTAAACGCCTAACTCAGTTATCCCTTTCAAATGTCTCAGATGATGAAAATGAGGCTCACAATGAACAAGAGCAGATCACTGGTTGGAATTACAACACGGAGAGATCTGAGTCAATAAAACCAGTGGTTGGGATGAAAAGACCTATAGATACTGAATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

414

Amino Acids

45.98

Weight (kDa)

5.07

Isoelectric Point (pI)

66.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1003, 1211
AccBSI CCGCTC 1 cut(s) 243
AciI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 458
AclWI GGATC 7 cut(s) 92, 204, 221, 379, 437, 738, 771
AcoI YGGCCR 1 cut(s) 5
AcsI RAATTY 2 cut(s) 839, 887
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 2 cut(s) 111, 131
AfaI GTAC 2 cut(s) 437, 616
AfeI AGCGCT 1 cut(s) 140
AfiI CCNNNNNNNGG 3 cut(s) 270, 1003, 1211
AgsI TTSAA 7 cut(s) 70, 277, 340, 932, 1067, 1075, 1113
AjnI CCWGG 1 cut(s) 263
Alw21I GWGCWC 2 cut(s) 815, 978
Alw26I GTCTC 6 cut(s) 121, 168, 485, 871, 880, 1123
AlwI GGATC 7 cut(s) 92, 204, 221, 379, 437, 738, 771
Aor51HI AGCGCT 1 cut(s) 140
AoxI GGCC 2 cut(s) 5, 1029
ApeKI GCWGC 4 cut(s) 23, 136, 172, 902
ApoI RAATTY 2 cut(s) 839, 887
AspLEI GCGC 1 cut(s) 141
AspS9I GGNCC 1 cut(s) 1030
AsuHPI GGTGA 2 cut(s) 79, 763
BanII GRGCYC 1 cut(s) 602
BbsI GAAGAC 3 cut(s) 266, 356, 369
Bbv12I GWGCWC 2 cut(s) 815, 978
BbvI GCAGC 4 cut(s) 35, 148, 159, 914
BccI CCATC 2 cut(s) 692, 748
BceAI ACGGC 3 cut(s) 98, 160, 250
BciT130I CCWGG 1 cut(s) 265
BcoDI GTCTC 6 cut(s) 121, 168, 485, 871, 880, 1123
BfaI CTAG 2 cut(s) 603, 953
BfmI CTRYAG 3 cut(s) 354, 1022, 1227
BfoI RGCGCY 1 cut(s) 142
BglII AGATCT 1 cut(s) 1187
BisI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 903
BlsI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 904
Bme1390I CCNGG 1 cut(s) 265
BmgT120I GGNCC 1 cut(s) 1030
BmiI GGNNCC 2 cut(s) 580, 738
BmrFI CCNGG 1 cut(s) 265
BmsI GCATC 3 cut(s) 115, 159, 551
BpiI GAAGAC 3 cut(s) 266, 356, 369
Bpu10I CCTNAGC 1 cut(s) 741
BpuEI CTTGAG 3 cut(s) 614, 803, 891
BsaHI GRCGYC 2 cut(s) 111, 131
BsaI GGTCTC 1 cut(s) 168
BsaJI CCNNGG 3 cut(s) 176, 483, 806
BsaWI WCCGGW 1 cut(s) 41
BsaXI ACNNNNNCTCC 4 cut(s) 313, 343, 808, 838
Bsc4I CCNNNNNNNGG 3 cut(s) 270, 1003, 1211
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 3 cut(s) 678, 1168, 1205
BseBI CCWGG 1 cut(s) 265
BseDI CCNNGG 3 cut(s) 176, 483, 806
BseGI GGATG 2 cut(s) 493, 1221
BseLI CCNNNNNNNGG 3 cut(s) 270, 1003, 1211
BseMII CTCAG 7 cut(s) 513, 632, 732, 891, 1112, 1134, 1182
BseNI ACTGG 3 cut(s) 678, 1168, 1205
BseRI GAGGAG 5 cut(s) 5, 38, 311, 334, 816
BseXI GCAGC 4 cut(s) 35, 148, 159, 914
BsgI GTGCAG 2 cut(s) 527, 663
BshFI GGCC 2 cut(s) 7, 1031
BsiHKAI GWGCWC 2 cut(s) 815, 978
BsiSI CCGG 2 cut(s) 8, 42
BslFI GGGAC 2 cut(s) 429, 909
BslI CCNNNNNNNGG 3 cut(s) 270, 1003, 1211
BsmAI GTCTC 6 cut(s) 121, 168, 485, 871, 880, 1123
BsmBI CGTCTC 2 cut(s) 121, 871
BsmFI GGGAC 2 cut(s) 429, 909
BsnI GGCC 2 cut(s) 7, 1031
Bso31I GGTCTC 1 cut(s) 168
Bsp1286I GDGCHC 3 cut(s) 602, 815, 978
Bsp1407I TGTACA 1 cut(s) 435
Bsp19I CCATGG 2 cut(s) 483, 806
BspACI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 458
BspANI GGCC 2 cut(s) 7, 1031
BspCNI CTCAG 7 cut(s) 514, 631, 733, 890, 1111, 1133, 1183
BspLI GGNNCC 2 cut(s) 580, 738
BspMAI CTGCAG 1 cut(s) 1026
BspPI GGATC 7 cut(s) 92, 204, 221, 379, 437, 738, 771
BspTNI GGTCTC 1 cut(s) 168
BsrBI CCGCTC 1 cut(s) 243
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 3 cut(s) 678, 1168, 1205
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 3 cut(s) 176, 483, 806
BssNI GRCGYC 2 cut(s) 111, 131
BssT1I CCWWGG 2 cut(s) 483, 806
Bst2UI CCWGG 1 cut(s) 265
Bst4CI ACNGT 3 cut(s) 355, 653, 1082
Bst6I CTCTTC 3 cut(s) 71, 305, 338
BstACI GRCGYC 2 cut(s) 111, 131
BstAUI TGTACA 1 cut(s) 435
BstC8I GCNNGC 3 cut(s) 9, 75, 611
BstDEI CTNAG 7 cut(s) 522, 618, 741, 877, 1098, 1120, 1191
BstDSI CCRYGG 3 cut(s) 176, 483, 806
BstF5I GGATG 2 cut(s) 493, 1221
BstH2I RGCGCY 1 cut(s) 142
BstHHI GCGC 1 cut(s) 141
BstMAI GTCTC 6 cut(s) 121, 168, 485, 871, 880, 1123
BstMWI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
BstNI CCWGG 1 cut(s) 265
BstSCI CCNGG 1 cut(s) 263
BstSFI CTRYAG 3 cut(s) 354, 1022, 1227
BstV1I GCAGC 4 cut(s) 35, 148, 159, 914
BstV2I GAAGAC 3 cut(s) 266, 356, 369
BstX2I RGATCY 2 cut(s) 213, 1187
BstYI RGATCY 2 cut(s) 213, 1187
BsuRI GGCC 2 cut(s) 7, 1031
BtgI CCRYGG 3 cut(s) 176, 483, 806
BtsCI GGATG 2 cut(s) 493, 1221
BtsIMutI CAGTG 3 cut(s) 658, 1161, 1212
Cac8I GCNNGC 3 cut(s) 9, 75, 611
CfoI GCGC 1 cut(s) 141
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 1030
CseI GACGC 2 cut(s) 119, 139
CsiI ACCWGGT 1 cut(s) 263
Csp6I GTAC 2 cut(s) 436, 615
CviAII CATG 6 cut(s) 433, 439, 484, 760, 807, 971
CviQI GTAC 2 cut(s) 436, 615
DdeI CTNAG 7 cut(s) 522, 618, 741, 877, 1098, 1120, 1191
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 3 cut(s) 71, 305, 338
EarI CTCTTC 3 cut(s) 71, 305, 338
Eco130I CCWWGG 2 cut(s) 483, 806
Eco24I GRGCYC 1 cut(s) 602
Eco31I GGTCTC 1 cut(s) 168
Eco32I GATATC 2 cut(s) 862, 919
Eco47III AGCGCT 1 cut(s) 140
Eco57I CTGAAG 1 cut(s) 891
EcoRI GAATTC 1 cut(s) 839
EcoRII CCWGG 1 cut(s) 263
EcoRV GATATC 2 cut(s) 862, 919
EcoT14I CCWWGG 2 cut(s) 483, 806
EcoT38I GRGCYC 1 cut(s) 602
ErhI CCWWGG 2 cut(s) 483, 806
Esp3I CGTCTC 2 cut(s) 121, 871
FaeI CATG 6 cut(s) 436, 442, 487, 763, 810, 974
FalI AAGNNNNNCTT 2 cut(s) 765, 797
FaqI GGGAC 2 cut(s) 429, 909
FatI CATG 6 cut(s) 432, 438, 483, 759, 806, 970
FauI CCCGC 3 cut(s) 82, 230, 236
Fnu4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 903
FokI GGATG 2 cut(s) 500, 1228
FriOI GRGCYC 1 cut(s) 602
Fsp4HI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 903
FspBI CTAG 2 cut(s) 603, 953
GlaI GCGC 1 cut(s) 140
GluI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 903
HaeII RGCGCY 1 cut(s) 142
HaeIII GGCC 2 cut(s) 7, 1031
HapII CCGG 2 cut(s) 8, 42
HgaI GACGC 2 cut(s) 119, 139
HhaI GCGC 1 cut(s) 141
Hin1I GRCGYC 2 cut(s) 111, 131
Hin1II CATG 6 cut(s) 436, 442, 487, 763, 810, 974
Hin6I GCGC 1 cut(s) 139
HinP1I GCGC 1 cut(s) 139
HinfI GANTC 8 cut(s) 45, 92, 383, 550, 785, 1013, 1193, 1238
HpaII CCGG 2 cut(s) 8, 42
HphI GGTGA 2 cut(s) 79, 763
Hpy166II GTNNAC 1 cut(s) 656
Hpy188III TCNNGA 4 cut(s) 631, 734, 833, 1242
Hpy8I GTNNAC 1 cut(s) 656
Hpy99I CGWCG 4 cut(s) 113, 133, 149, 236
HpyAV CCTTC 2 cut(s) 199, 1069
HpyCH4III ACNGT 3 cut(s) 355, 653, 1082
HpyCH4V TGCA 6 cut(s) 497, 508, 609, 644, 796, 1024
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
HpyF3I CTNAG 7 cut(s) 522, 618, 741, 877, 1098, 1120, 1191
Hsp92I GRCGYC 2 cut(s) 111, 131
Hsp92II CATG 6 cut(s) 436, 442, 487, 763, 810, 974
HspAI GCGC 1 cut(s) 139
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
LmnI GCTCC 8 cut(s) 146, 240, 298, 578, 736, 818, 829, 1006
Lsp1109I GCAGC 4 cut(s) 35, 148, 159, 914
LweI GCATC 3 cut(s) 115, 159, 551
MabI ACCWGGT 1 cut(s) 263
MaeI CTAG 2 cut(s) 603, 953
MbiI CCGCTC 1 cut(s) 243
MfeI CAATTG 1 cut(s) 767
MflI RGATCY 2 cut(s) 213, 1187
MhlI GDGCHC 3 cut(s) 602, 815, 978
MluCI AATT 7 cut(s) 661, 767, 839, 887, 926, 999, 1171
MlyI GAGTC 5 cut(s) 39, 86, 559, 794, 1202
MmeI TCCRAC 1 cut(s) 1148
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 3 cut(s) 420, 515, 1086
MslI CAYNNNNRTG 2 cut(s) 437, 482
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 2 cut(s) 8, 42
MspR9I CCNGG 1 cut(s) 265
MunI CAATTG 1 cut(s) 767
MvaI CCWGG 1 cut(s) 265
MwoI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
NaeI GCCGGC 1 cut(s) 9
NcoI CCATGG 2 cut(s) 483, 806
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 6 cut(s) 436, 442, 487, 763, 810, 974
NlaIV GGNNCC 2 cut(s) 580, 738
NmeAIII GCCGAG 1 cut(s) 106
PcsI WCGNNNNNNNCGW 1 cut(s) 125
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 383, 1013, 1238
PflFI GACNNNGTC 1 cut(s) 113
PflMI CCANNNNNTGG 2 cut(s) 1003, 1211
PkrI GCNGC 8 cut(s) 22, 25, 34, 79, 135, 138, 174, 904
PleI GAGTC 5 cut(s) 39, 86, 558, 793, 1201
PpsI GAGTC 5 cut(s) 39, 86, 558, 793, 1201
Psp6I CCWGG 1 cut(s) 263
PspGI CCWGG 1 cut(s) 263
PspN4I GGNNCC 2 cut(s) 580, 738
PspPI GGNCC 1 cut(s) 1030
PstI CTGCAG 1 cut(s) 1026
PsuI RGATCY 2 cut(s) 213, 1187
PsyI GACNNNGTC 1 cut(s) 113
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 2 cut(s) 437, 616
RsaNI GTAC 2 cut(s) 436, 615
RseI CAYNNNNRTG 2 cut(s) 437, 482
SaqAI TTAA 3 cut(s) 420, 515, 1086
SatI GCNGC 8 cut(s) 21, 24, 33, 78, 134, 137, 173, 903
Sau96I GGNCC 1 cut(s) 1030
SchI GAGTC 5 cut(s) 39, 86, 559, 794, 1202
ScrFI CCNGG 1 cut(s) 265
SduI GDGCHC 3 cut(s) 602, 815, 978
SexAI ACCWGGT 1 cut(s) 263
SfaNI GCATC 3 cut(s) 115, 159, 551
SfcI CTRYAG 3 cut(s) 354, 1022, 1227
SmiMI CAYNNNNRTG 2 cut(s) 437, 482
SmlI CTYRAG 3 cut(s) 629, 782, 906
SmoI CTYRAG 3 cut(s) 629, 782, 906
Sse9I AATT 7 cut(s) 661, 767, 839, 887, 926, 999, 1171
SsiI CCGC 9 cut(s) 21, 33, 75, 78, 101, 134, 237, 243, 458
SspMI CTAG 2 cut(s) 603, 953
StyD4I CCNGG 1 cut(s) 263
StyI CCWWGG 2 cut(s) 483, 806
TaaI ACNGT 3 cut(s) 355, 653, 1082
TaqI TCGA 3 cut(s) 227, 921, 981
TaqII GACCGA 1 cut(s) 150
TasI AATT 7 cut(s) 661, 767, 839, 887, 926, 999, 1171
TatI WGTACW 1 cut(s) 435
TauI GCSGC 4 cut(s) 23, 35, 80, 136
TfiI GAWTC 3 cut(s) 383, 1013, 1238
Tru1I TTAA 3 cut(s) 420, 515, 1086
Tru9I TTAA 3 cut(s) 420, 515, 1086
TscAI CASTG 3 cut(s) 658, 1168, 1212
TseI GCWGC 4 cut(s) 23, 136, 172, 902
TspDTI ATGAA 5 cut(s) 218, 674, 1143, 1161, 1232
TspGWI ACGGA 2 cut(s) 133, 1196
TspRI CASTG 3 cut(s) 658, 1168, 1212
Tth111I GACNNNGTC 1 cut(s) 113
Van91I CCANNNNNTGG 2 cut(s) 1003, 1211
XapI RAATTY 2 cut(s) 839, 887
XspI CTAG 2 cut(s) 603, 953
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.