Rh5CG129300

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
Physical Location & Seq
Forward (+)
10744092 .. 10744682
591 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG129300.1

Sequence Viewer

Length: 267 bp
ATGCCCGCCGCCGAGATCACGGACTCTGATCCGCAAAACGACGCTGTCTTAGACGATGCGACTCCGCTGCGCTCCATCACTTCTGTTTCTCGGTCTCTGGTGCTGCCGTGGGCGAGCGACTGTGAGGATCAGGTCAAGGAGGGGATCGTTAGGTTTTCGACCGATGGTGGGAGTGGCAAGAAGAAGAAAAGGAGAAGGTTTTGGTTGAAGAAGAAGGGAGTAGTTGGAATCAATTATGAAACCATCTTGAGGTTAGAGTTTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

88

Amino Acids

9.85

Weight (kDa)

8.85

Isoelectric Point (pI)

55.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 265
AciI CCGC 4 cut(s) 6, 9, 32, 65
AclWI GGATC 3 cut(s) 23, 135, 152
AfiI CCNNNNNNNGG 2 cut(s) 168, 249
AgsI TTSAA 1 cut(s) 208
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 3 cut(s) 23, 135, 152
ApeKI GCWGC 2 cut(s) 67, 103
AspLEI GCGC 1 cut(s) 72
BbvI GCAGC 2 cut(s) 54, 90
BccI CCATC 3 cut(s) 83, 158, 251
BceAI ACGGC 1 cut(s) 91
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BcoDI GTCTC 1 cut(s) 99
BisI GCNGC 3 cut(s) 9, 68, 104
BlsI GCNGC 3 cut(s) 10, 69, 105
BmsI GCATC 1 cut(s) 46
BsaI GGTCTC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 107
Bsc4I CCNNNNNNNGG 2 cut(s) 168, 249
BseDI CCNNGG 1 cut(s) 107
BseLI CCNNNNNNNGG 2 cut(s) 168, 249
BseXI GCAGC 2 cut(s) 54, 90
Bsh1285I CGRYCG 1 cut(s) 162
BsiEI CGRYCG 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 168, 249
BsmAI GTCTC 1 cut(s) 99
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 4 cut(s) 15, 28, 127, 144
BspACI CCGC 4 cut(s) 6, 9, 32, 65
BspPI GGATC 3 cut(s) 23, 135, 152
BspTNI GGTCTC 1 cut(s) 99
BssECI CCNNGG 1 cut(s) 107
BssMI GATC 4 cut(s) 15, 28, 127, 144
Bst4CI ACNGT 1 cut(s) 122
BstC8I GCNNGC 2 cut(s) 6, 115
BstDEI CTNAG 1 cut(s) 49
BstDSI CCRYGG 1 cut(s) 107
BstHHI GCGC 1 cut(s) 72
BstKTI GATC 4 cut(s) 18, 31, 130, 147
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 4 cut(s) 15, 28, 127, 144
BstMCI CGRYCG 1 cut(s) 162
BstV1I GCAGC 2 cut(s) 54, 90
BtgI CCRYGG 1 cut(s) 107
Cac8I GCNNGC 2 cut(s) 6, 115
CfoI GCGC 1 cut(s) 72
CseI GACGC 1 cut(s) 50
DdeI CTNAG 1 cut(s) 49
DpnI GATC 4 cut(s) 17, 30, 129, 146
DpnII GATC 4 cut(s) 15, 28, 127, 144
Eco31I GGTCTC 1 cut(s) 99
FaiI YATR 2 cut(s) 237, 265
FauI CCCGC 1 cut(s) 13
Fnu4HI GCNGC 3 cut(s) 9, 68, 104
Fsp4HI GCNGC 3 cut(s) 9, 68, 104
GlaI GCGC 1 cut(s) 71
GluI GCNGC 3 cut(s) 9, 68, 104
HgaI GACGC 1 cut(s) 50
HhaI GCGC 1 cut(s) 72
Hin6I GCGC 1 cut(s) 70
HinP1I GCGC 1 cut(s) 70
HinfI GANTC 3 cut(s) 23, 61, 228
Hpy188I TCNGA 1 cut(s) 28
Hpy188III TCNNGA 1 cut(s) 247
Hpy99I CGWCG 1 cut(s) 44
HpyAV CCTTC 2 cut(s) 189, 208
HpyCH4III ACNGT 1 cut(s) 122
HpyF3I CTNAG 1 cut(s) 49
HspAI GCGC 1 cut(s) 70
Kzo9I GATC 4 cut(s) 15, 28, 127, 144
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 83, 116
Lsp1109I GCAGC 2 cut(s) 54, 90
LweI GCATC 1 cut(s) 46
MalI GATC 4 cut(s) 17, 30, 129, 146
MboI GATC 4 cut(s) 15, 28, 127, 144
MboII GAAGA 4 cut(s) 193, 196, 220, 223
MluCI AATT 1 cut(s) 232
MlyI GAGTC 2 cut(s) 17, 55
MmeI TCCRAC 1 cut(s) 205
MnlI CCTC 3 cut(s) 118, 133, 243
MspA1I CMGCKG 1 cut(s) 67
NdeII GATC 4 cut(s) 15, 28, 127, 144
NmeAIII GCCGAG 1 cut(s) 37
PfeI GAWTC 1 cut(s) 228
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 3 cut(s) 10, 69, 105
PleI GAGTC 2 cut(s) 17, 55
PpsI GAGTC 2 cut(s) 17, 55
PsiI TTATAA 1 cut(s) 265
PsyI GACNNNGTC 1 cut(s) 44
SatI GCNGC 3 cut(s) 9, 68, 104
Sau3AI GATC 4 cut(s) 15, 28, 127, 144
SchI GAGTC 2 cut(s) 17, 55
SetI ASST 4 cut(s) 135, 155, 200, 254
SfaNI GCATC 1 cut(s) 46
SmlI CTYRAG 1 cut(s) 247
SmoI CTYRAG 1 cut(s) 247
Sse9I AATT 1 cut(s) 232
SsiI CCGC 4 cut(s) 6, 9, 32, 65
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 1 cut(s) 158
TaqII GACCGA 2 cut(s) 81, 176
TasI AATT 1 cut(s) 232
TauI GCSGC 1 cut(s) 11
TfiI GAWTC 1 cut(s) 228
TseI GCWGC 2 cut(s) 67, 103
TspDTI ATGAA 1 cut(s) 252
TspGWI ACGGA 1 cut(s) 35
Tth111I GACNNNGTC 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.