FvH4_6g15500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0003917
Physical Location & Seq
Forward (+)
9624632 .. 9628573
3942 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g15500.t1

Sequence Viewer

Length: 1236 bp
ATGTGGCCGGCTCTCTTCGCCGCGGCGGTGGCTGCCTCCACCGGGCTCCTCGCCAAGAACCACCTCTCCAAGCGCGCCTCCGTGATCACCGACTCCGATCCGCAAAACGACGCCGTCGTGGAGAACGCGACGCCGCGGAGCCCCGTCGGTTCGGTTTCTCGGCCTCCGTGGGACAGCGACTGCGAGGATCAGGTGAAGGAGGGGATCTTTAGGTTTTCGAGCGACTGCGGGAGTGGGGAGAAGAAGAAGAAGACGAAGCTTCGGTTGAAGAAGAAGAAGAATGTGGCGGAGGAGCAGCAGCAGAAGAAGAAGAGTGGGAGGAGAGTTGGCGTTTGCTTGAAGAGGAGGAAGACTGTTCCTTCCAAATGTGGATCGTCTTCGAATCCCAAAGATACTACCTCATTGTTTAACTGGGGACTTAATATTGGGATCATGTACATGATGACTGCTGGAAAAGCTGAAATCAATAAGCTGAACACAACCATGGATGAGACTGCAAAAGTTGTGCAGGAGTTAAAATCTGAGCTAAATAAAAGAAAAGCATCACAGAGTCAGCAAGTTTCTTGTTCTGAAAGTGAAGCCAATACACAATATCAGAGCCCTAGTTGCAAGCGTTCCCAGACAGAACTCACGAAGTCAAGTGCAGAATACGGTGAACCTAATTATATGAGAGCTTCCAGCTTCCAAATATCTGATGTCGAATGTCCAAGTAGTGTTCTTACAGAGGACCCAGAGCCAGAGGTCATGGACATGGATCAATTGGAAGCAGAACTTGAGTCTGAATTGCAAAAACTTCCATGGTGCTCTACAGAAGCTCCTCAGCAAGAGGGGTTCAGAAATCTGGAAAAGGGTTTTGTCTCTGATGATTCAGCTCAAAAGTTTCATGGACAAGCAGCAAAGGGTATTGTTATTGAGCAATTTCAAGGAGTATTACCAGCTGAGCTAGACCAGAAATTATGCCATGTGCTCATTGAACAGCAGGAAAGCCAAATTGTGGAGCTGGAATCCGGACTGCAGTCTGCCCAATCGAAACTCCAAGAAAAAGAAACTGAACTTCAAGCATTGAAGGACTGTGTTAAACGCCTGACTCAGTTAAATCTTTCTACTGTCTCAGATGATGAGAATGAGGCTCACAATGAACAAGAGCAGACCACTCATTGGAATTACAACATGGAGGGATCTGAGTCACTAAAATCAGTTGTTGGGATGAAAAGACCTATGGATTATGAAGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

412

Amino Acids

45.75

Weight (kDa)

5.4

Isoelectric Point (pI)

63.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 994, 1158
AccII CGCG 4 cut(s) 23, 75, 128, 136
AccIII TCCGGA 1 cut(s) 1007
AciI CCGC 8 cut(s) 21, 23, 26, 101, 134, 136, 228, 287
AclWI GGATC 7 cut(s) 92, 195, 212, 379, 437, 762, 1186
AcoI YGGCCR 1 cut(s) 5
AcyI GRCGYC 2 cut(s) 111, 131
AfaI GTAC 1 cut(s) 437
AfiI CCNNNNNNNGG 3 cut(s) 42, 994, 1158
AgsI TTSAA 6 cut(s) 268, 340, 923, 974, 1058, 1066
AloI GAACNNNNNNTCC 2 cut(s) 50, 82
Alw21I GWGCWC 2 cut(s) 806, 969
Alw26I GTCTC 3 cut(s) 485, 862, 1114
AlwI GGATC 7 cut(s) 92, 195, 212, 379, 437, 762, 1186
AlwNI CAGNNNCTG 1 cut(s) 180
Aor13HI TCCGGA 1 cut(s) 1007
AoxI GGCC 2 cut(s) 5, 161
ApeKI GCWGC 4 cut(s) 32, 295, 298, 893
AspLEI GCGC 2 cut(s) 75, 77
AspS9I GGNCC 1 cut(s) 727
AsuC2I CCSGG 1 cut(s) 43
AsuHPI GGTGA 3 cut(s) 79, 205, 665
AsuII TTCGAA 1 cut(s) 380
AvaII GGWCC 1 cut(s) 727
BanII GRGCYC 3 cut(s) 48, 143, 602
BbsI GAAGAC 3 cut(s) 257, 356, 369
Bbv12I GWGCWC 2 cut(s) 806, 969
BbvCI CCTCAGC 1 cut(s) 819
BbvI GCAGC 4 cut(s) 19, 307, 310, 905
BceAI ACGGC 1 cut(s) 98
BclI TGATCA 1 cut(s) 84
BcnI CCSGG 1 cut(s) 43
BcoDI GTCTC 3 cut(s) 485, 862, 1114
BfaI CTAG 2 cut(s) 603, 944
BfmI CTRYAG 2 cut(s) 807, 1013
BisI GCNGC 7 cut(s) 21, 24, 33, 134, 296, 299, 894
BlpI GCTNAGC 1 cut(s) 939
BlsI GCNGC 7 cut(s) 22, 25, 34, 135, 297, 300, 895
Bme1390I CCNGG 1 cut(s) 43
Bme18I GGWCC 1 cut(s) 727
BmgT120I GGNCC 1 cut(s) 727
BmiI GGNNCC 3 cut(s) 47, 140, 729
BmrFI CCNGG 1 cut(s) 43
BmrI ACTGGG 1 cut(s) 421
BmsI GCATC 1 cut(s) 551
BmuI ACTGGG 1 cut(s) 421
BoxI GACNNNNGTC 1 cut(s) 1015
BpiI GAAGAC 3 cut(s) 257, 356, 369
Bpu10I CCTNAGC 1 cut(s) 819
Bpu1102I GCTNAGC 1 cut(s) 939
Bpu14I TTCGAA 1 cut(s) 380
BpuEI CTTGAG 1 cut(s) 794
BpuMI CCSGG 1 cut(s) 43
BsaHI GRCGYC 2 cut(s) 111, 131
BsaJI CCNNGG 5 cut(s) 21, 134, 167, 483, 797
BsaWI WCCGGW 1 cut(s) 1007
BsaXI ACNNNNNCTCC 4 cut(s) 50, 80, 799, 829
Bsc4I CCNNNNNNNGG 3 cut(s) 42, 994, 1158
Bse118I RCCGGY 1 cut(s) 7
Bse1I ACTGG 1 cut(s) 416
BseAI TCCGGA 1 cut(s) 1007
BseDI CCNNGG 5 cut(s) 21, 134, 167, 483, 797
BseGI GGATG 2 cut(s) 493, 1212
BseLI CCNNNNNNNGG 3 cut(s) 42, 994, 1158
BseMII CTCAG 6 cut(s) 513, 833, 930, 1103, 1125, 1173
BseNI ACTGG 1 cut(s) 416
BsePI GCGCGC 1 cut(s) 73
BseRI GAGGAG 5 cut(s) 38, 305, 334, 358, 807
BseXI GCAGC 4 cut(s) 19, 307, 310, 905
BsgI GTGCAG 2 cut(s) 527, 663
Bsh1236I CGCG 4 cut(s) 23, 75, 128, 136
BshFI GGCC 2 cut(s) 7, 163
BsiHKAI GWGCWC 2 cut(s) 806, 969
BsiSI CCGG 3 cut(s) 8, 42, 1008
BslFI GGGAC 2 cut(s) 185, 429
BslI CCNNNNNNNGG 3 cut(s) 42, 994, 1158
BsmAI GTCTC 3 cut(s) 485, 862, 1114
BsmFI GGGAC 2 cut(s) 185, 429
BsnI GGCC 2 cut(s) 7, 163
Bsp119I TTCGAA 1 cut(s) 380
Bsp1286I GDGCHC 5 cut(s) 48, 143, 602, 806, 969
Bsp13I TCCGGA 1 cut(s) 1007
Bsp1407I TGTACA 1 cut(s) 435
Bsp143I GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
Bsp1720I GCTNAGC 1 cut(s) 939
Bsp19I CCATGG 2 cut(s) 483, 797
BspACI CCGC 8 cut(s) 21, 23, 26, 101, 134, 136, 228, 287
BspANI GGCC 2 cut(s) 7, 163
BspCNI CTCAG 6 cut(s) 514, 832, 931, 1102, 1124, 1174
BspEI TCCGGA 1 cut(s) 1007
BspFNI CGCG 4 cut(s) 23, 75, 128, 136
BspLI GGNNCC 3 cut(s) 47, 140, 729
BspMAI CTGCAG 1 cut(s) 1017
BspPI GGATC 7 cut(s) 92, 195, 212, 379, 437, 762, 1186
BspT104I TTCGAA 1 cut(s) 380
BsrFI RCCGGY 1 cut(s) 7
BsrGI TGTACA 1 cut(s) 435
BsrI ACTGG 1 cut(s) 416
BssAI RCCGGY 1 cut(s) 7
BssECI CCNNGG 5 cut(s) 21, 134, 167, 483, 797
BssHII GCGCGC 1 cut(s) 73
BssMI GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
BssNI GRCGYC 2 cut(s) 111, 131
BssT1I CCWWGG 2 cut(s) 483, 797
Bst4CI ACNGT 4 cut(s) 355, 653, 1073, 1108
Bst6I CTCTTC 3 cut(s) 20, 305, 335
BstACI GRCGYC 2 cut(s) 111, 131
BstAUI TGTACA 1 cut(s) 435
BstBI TTCGAA 1 cut(s) 380
BstC8I GCNNGC 3 cut(s) 9, 75, 611
BstDEI CTNAG 6 cut(s) 522, 819, 939, 1089, 1111, 1182
BstDSI CCRYGG 5 cut(s) 21, 134, 167, 483, 797
BstF5I GGATG 2 cut(s) 493, 1212
BstFNI CGCG 4 cut(s) 23, 75, 128, 136
BstHHI GCGC 2 cut(s) 75, 77
BstKTI GATC 8 cut(s) 87, 100, 190, 207, 374, 432, 757, 1181
BstMAI GTCTC 3 cut(s) 485, 862, 1114
BstMBI GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
BstMWI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
BstPAI GACNNNNGTC 1 cut(s) 1015
BstSCI CCNGG 1 cut(s) 41
BstSFI CTRYAG 2 cut(s) 807, 1013
BstUI CGCG 4 cut(s) 23, 75, 128, 136
BstV1I GCAGC 4 cut(s) 19, 307, 310, 905
BstV2I GAAGAC 3 cut(s) 257, 356, 369
BstX2I RGATCY 2 cut(s) 204, 1178
BstYI RGATCY 2 cut(s) 204, 1178
BsuRI GGCC 2 cut(s) 7, 163
BtgI CCRYGG 5 cut(s) 21, 134, 167, 483, 797
BtsCI GGATG 2 cut(s) 493, 1212
Cac8I GCNNGC 3 cut(s) 9, 75, 611
CaiI CAGNNNCTG 1 cut(s) 180
CfoI GCGC 2 cut(s) 75, 77
Cfr10I RCCGGY 1 cut(s) 7
Cfr13I GGNCC 1 cut(s) 727
Cfr42I CCGCGG 2 cut(s) 24, 137
CseI GACGC 2 cut(s) 119, 139
Csp6I GTAC 1 cut(s) 436
CviAII CATG 9 cut(s) 433, 439, 484, 745, 751, 798, 884, 962, 1171
CviQI GTAC 1 cut(s) 436
DdeI CTNAG 6 cut(s) 522, 819, 939, 1089, 1111, 1182
DpnI GATC 8 cut(s) 86, 99, 189, 206, 373, 431, 756, 1180
DpnII GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
EaeI YGGCCR 1 cut(s) 5
Eam1104I CTCTTC 3 cut(s) 20, 305, 335
EarI CTCTTC 3 cut(s) 20, 305, 335
EciI GGCGGA 1 cut(s) 302
Eco130I CCWWGG 2 cut(s) 483, 797
Eco24I GRGCYC 3 cut(s) 48, 143, 602
Eco47I GGWCC 1 cut(s) 727
EcoO109I RGGNCCY 1 cut(s) 727
EcoT14I CCWWGG 2 cut(s) 483, 797
EcoT38I GRGCYC 3 cut(s) 48, 143, 602
ErhI CCWWGG 2 cut(s) 483, 797
FaeI CATG 9 cut(s) 436, 442, 487, 748, 754, 801, 887, 965, 1174
FalI AAGNNNNNCTT 2 cut(s) 756, 788
FaqI GGGAC 2 cut(s) 185, 429
FatI CATG 9 cut(s) 432, 438, 483, 744, 750, 797, 883, 961, 1170
FauI CCCGC 1 cut(s) 221
FbaI TGATCA 1 cut(s) 84
Fnu4HI GCNGC 7 cut(s) 21, 24, 33, 134, 296, 299, 894
FokI GGATG 2 cut(s) 500, 1219
FriOI GRGCYC 3 cut(s) 48, 143, 602
Fsp4HI GCNGC 7 cut(s) 21, 24, 33, 134, 296, 299, 894
FspBI CTAG 2 cut(s) 603, 944
GlaI GCGC 2 cut(s) 74, 76
GluI GCNGC 7 cut(s) 21, 24, 33, 134, 296, 299, 894
HaeIII GGCC 2 cut(s) 7, 163
HapII CCGG 3 cut(s) 8, 42, 1008
HgaI GACGC 2 cut(s) 119, 139
HhaI GCGC 2 cut(s) 75, 77
Hin1I GRCGYC 2 cut(s) 111, 131
Hin1II CATG 9 cut(s) 436, 442, 487, 748, 754, 801, 887, 965, 1174
Hin6I GCGC 2 cut(s) 73, 75
HinP1I GCGC 2 cut(s) 73, 75
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 8 cut(s) 92, 382, 550, 776, 866, 1004, 1087, 1184
HpaII CCGG 3 cut(s) 8, 42, 1008
HphI GGTGA 3 cut(s) 79, 205, 665
Hpy166II GTNNAC 1 cut(s) 656
Hpy188III TCNNGA 3 cut(s) 631, 842, 1008
Hpy8I GTNNAC 1 cut(s) 656
Hpy99I CGWCG 4 cut(s) 113, 119, 133, 149
HpyAV CCTTC 3 cut(s) 190, 369, 1060
HpyCH4III ACNGT 4 cut(s) 355, 653, 1073, 1108
HpyCH4V TGCA 6 cut(s) 497, 508, 609, 644, 787, 1015
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
HpyF3I CTNAG 6 cut(s) 522, 819, 939, 1089, 1111, 1182
Hsp92I GRCGYC 2 cut(s) 111, 131
Hsp92II CATG 9 cut(s) 436, 442, 487, 748, 754, 801, 887, 965, 1174
HspAI GCGC 2 cut(s) 73, 75
Kpn2I TCCGGA 1 cut(s) 1007
KroI GCCGGC 1 cut(s) 7
KroNI GCCGGC 1 cut(s) 9
Ksp22I TGATCA 1 cut(s) 84
KspI CCGCGG 2 cut(s) 24, 137
Kzo9I GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
LmnI GCTCC 5 cut(s) 51, 138, 292, 820, 997
Lsp1109I GCAGC 4 cut(s) 19, 307, 310, 905
LweI GCATC 1 cut(s) 551
MaeI CTAG 2 cut(s) 603, 944
MaeIII GTNAC 1 cut(s) 1185
MalI GATC 8 cut(s) 86, 99, 189, 206, 373, 431, 756, 1180
MboI GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
MfeI CAATTG 1 cut(s) 758
MflI RGATCY 2 cut(s) 204, 1178
MhlI GDGCHC 5 cut(s) 48, 143, 602, 806, 969
MluCI AATT 7 cut(s) 661, 758, 782, 917, 953, 990, 1162
MlyI GAGTC 5 cut(s) 86, 559, 785, 1081, 1193
MroI TCCGGA 1 cut(s) 1007
MroNI GCCGGC 1 cut(s) 7
MseI TTAA 5 cut(s) 408, 420, 515, 1077, 1094
MslI CAYNNNNRTG 3 cut(s) 437, 482, 749
MspA1I CMGCKG 3 cut(s) 23, 136, 938
MspI CCGG 3 cut(s) 8, 42, 1008
MspR9I CCNGG 1 cut(s) 43
MunI CAATTG 1 cut(s) 758
MvnI CGCG 4 cut(s) 23, 75, 128, 136
MwoI GCNNNNNNNGC 5 cut(s) 17, 29, 32, 455, 606
NaeI GCCGGC 1 cut(s) 9
NciI CCSGG 1 cut(s) 43
NcoI CCATGG 2 cut(s) 483, 797
NdeII GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
NgoMIV GCCGGC 1 cut(s) 7
NlaIII CATG 9 cut(s) 436, 442, 487, 748, 754, 801, 887, 965, 1174
NlaIV GGNNCC 3 cut(s) 47, 140, 729
NmeAIII GCCGAG 1 cut(s) 139
NmuCI GTSAC 1 cut(s) 1185
NspV TTCGAA 1 cut(s) 380
PauI GCGCGC 1 cut(s) 73
PcsI WCGNNNNNNNCGW 1 cut(s) 114
PdiI GCCGGC 1 cut(s) 9
PfeI GAWTC 3 cut(s) 382, 866, 1004
PflFI GACNNNGTC 1 cut(s) 113
PflMI CCANNNNNTGG 2 cut(s) 994, 1158
PkrI GCNGC 7 cut(s) 22, 25, 34, 135, 297, 300, 895
PleI GAGTC 5 cut(s) 86, 558, 784, 1081, 1192
PpsI GAGTC 5 cut(s) 86, 558, 784, 1081, 1192
PpuMI RGGWCCY 1 cut(s) 727
PshAI GACNNNNGTC 1 cut(s) 1015
Psp5II RGGWCCY 1 cut(s) 727
PspN4I GGNNCC 3 cut(s) 47, 140, 729
PspPI GGNCC 1 cut(s) 727
PspPPI RGGWCCY 1 cut(s) 727
PstI CTGCAG 1 cut(s) 1017
PstNI CAGNNNCTG 1 cut(s) 180
PsuI RGATCY 2 cut(s) 204, 1178
PsyI GACNNNGTC 1 cut(s) 113
PteI GCGCGC 1 cut(s) 73
PvuII CAGCTG 1 cut(s) 938
RsaI GTAC 1 cut(s) 437
RsaNI GTAC 1 cut(s) 436
RseI CAYNNNNRTG 3 cut(s) 437, 482, 749
SacII CCGCGG 2 cut(s) 24, 137
SaqAI TTAA 5 cut(s) 408, 420, 515, 1077, 1094
SatI GCNGC 7 cut(s) 21, 24, 33, 134, 296, 299, 894
Sau3AI GATC 8 cut(s) 84, 97, 187, 204, 371, 429, 754, 1178
Sau96I GGNCC 1 cut(s) 727
SchI GAGTC 5 cut(s) 86, 559, 785, 1081, 1193
ScrFI CCNGG 1 cut(s) 43
SduI GDGCHC 5 cut(s) 48, 143, 602, 806, 969
SfaNI GCATC 1 cut(s) 551
SfcI CTRYAG 2 cut(s) 807, 1013
Sfr303I CCGCGG 2 cut(s) 24, 137
SfuI TTCGAA 1 cut(s) 380
SgrBI CCGCGG 2 cut(s) 24, 137
SinI GGWCC 1 cut(s) 727
SmiMI CAYNNNNRTG 3 cut(s) 437, 482, 749
SmlI CTYRAG 1 cut(s) 773
SmoI CTYRAG 1 cut(s) 773
Sse9I AATT 7 cut(s) 661, 758, 782, 917, 953, 990, 1162
SsiI CCGC 8 cut(s) 21, 23, 26, 101, 134, 136, 228, 287
SspI AATATT 1 cut(s) 424
SspMI CTAG 2 cut(s) 603, 944
StyD4I CCNGG 1 cut(s) 41
StyI CCWWGG 2 cut(s) 483, 797
TaaI ACNGT 4 cut(s) 355, 653, 1073, 1108
TaqI TCGA 4 cut(s) 218, 380, 699, 1028
TasI AATT 7 cut(s) 661, 758, 782, 917, 953, 990, 1162
TatI WGTACW 1 cut(s) 435
TauI GCSGC 3 cut(s) 23, 26, 136
TfiI GAWTC 3 cut(s) 382, 866, 1004
Tru1I TTAA 5 cut(s) 408, 420, 515, 1077, 1094
Tru9I TTAA 5 cut(s) 408, 420, 515, 1077, 1094
TseFI GTSAC 1 cut(s) 1185
TseI GCWGC 4 cut(s) 32, 295, 298, 893
Tsp45I GTSAC 1 cut(s) 1185
TspDTI ATGAA 3 cut(s) 872, 1152, 1223
TspGWI ACGGA 2 cut(s) 70, 156
Tth111I GACNNNGTC 1 cut(s) 113
Van91I CCANNNNNTGG 2 cut(s) 994, 1158
VpaK11BI GGWCC 1 cut(s) 727
XspI CTAG 2 cut(s) 603, 944
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.