Rh3BG279500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0003917
Physical Location & Seq
Reverse (-)
27554126 .. 27554416
291 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG279500.1

Sequence Viewer

Length: 291 bp
ATGCCCGGTGCCGAGATCACCAACTCTGATCCGCAAAACGACGTTGTCTTAGACGATGCGATGCCGCTGCGCTCCGTCGCTTCTGTTTCTCGGTCTCCGGCGCTGTCGTGGGAGAGCGACTGTGAGGATCAGGTCAAGGAGGGGATTGTTAGGTTTTCAACCGATGGCGGGAGTGGCAAGAAGAAGAAAAAGACAAGGTTTTGGTTGAAGAAGAATGGAGTAGTTAATAATGTTACTAAGAACTTGGGTGATGATTCCATCTTAAAGGCCTTGAGGTATTTCTTGTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

96

Amino Acids

10.62

Weight (kDa)

8.79

Isoelectric Point (pI)

44.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 8
AciI CCGC 3 cut(s) 32, 65, 168
AclWI GGATC 2 cut(s) 23, 135
AfiI CCNNNNNNNGG 1 cut(s) 168
AgsI TTSAA 2 cut(s) 159, 208
Alw26I GTCTC 1 cut(s) 99
AlwI GGATC 2 cut(s) 23, 135
AoxI GGCC 1 cut(s) 267
ApeKI GCWGC 1 cut(s) 67
AspLEI GCGC 2 cut(s) 72, 103
AsuC2I CCSGG 1 cut(s) 6
AsuHPI GGTGA 2 cut(s) 10, 260
BanI GGYRCC 1 cut(s) 8
BbvI GCAGC 1 cut(s) 54
BccI CCATC 2 cut(s) 158, 266
BcgI CGANNNNNNTGC 2 cut(s) 49, 83
BcnI CCSGG 1 cut(s) 6
BcoDI GTCTC 1 cut(s) 99
BfaI CTAG 1 cut(s) 289
BfoI RGCGCY 1 cut(s) 104
BisI GCNGC 2 cut(s) 65, 68
BlsI GCNGC 2 cut(s) 66, 69
Bme1390I CCNGG 1 cut(s) 6
BmiI GGNNCC 1 cut(s) 10
BmrFI CCNGG 1 cut(s) 6
BmsI GCATC 2 cut(s) 46, 51
BpuMI CCSGG 1 cut(s) 6
BsaI GGTCTC 1 cut(s) 99
Bsc4I CCNNNNNNNGG 1 cut(s) 168
BseLI CCNNNNNNNGG 1 cut(s) 168
BseXI GCAGC 1 cut(s) 54
BshFI GGCC 1 cut(s) 269
BshNI GGYRCC 1 cut(s) 8
BsiSI CCGG 2 cut(s) 6, 98
BslI CCNNNNNNNGG 1 cut(s) 168
BsmAI GTCTC 1 cut(s) 99
BsnI GGCC 1 cut(s) 269
Bso31I GGTCTC 1 cut(s) 99
Bsp143I GATC 3 cut(s) 15, 28, 127
BspACI CCGC 3 cut(s) 32, 65, 168
BspANI GGCC 1 cut(s) 269
BspLI GGNNCC 1 cut(s) 10
BspPI GGATC 2 cut(s) 23, 135
BspT107I GGYRCC 1 cut(s) 8
BspTNI GGTCTC 1 cut(s) 99
BssMI GATC 3 cut(s) 15, 28, 127
Bst4CI ACNGT 1 cut(s) 122
BstDEI CTNAG 2 cut(s) 49, 237
BstH2I RGCGCY 1 cut(s) 104
BstHHI GCGC 2 cut(s) 72, 103
BstKTI GATC 3 cut(s) 18, 31, 130
BstMAI GTCTC 1 cut(s) 99
BstMBI GATC 3 cut(s) 15, 28, 127
BstMWI GCNNNNNNNGC 1 cut(s) 174
BstSCI CCNGG 1 cut(s) 4
BstV1I GCAGC 1 cut(s) 54
BsuRI GGCC 1 cut(s) 269
BtgZI GCGATG 1 cut(s) 74
CfoI GCGC 2 cut(s) 72, 103
CviJI RGCY 1 cut(s) 269
CviKI_1 RGCY 1 cut(s) 269
DdeI CTNAG 2 cut(s) 49, 237
DpnI GATC 3 cut(s) 17, 30, 129
DpnII GATC 3 cut(s) 15, 28, 127
Eco147I AGGCCT 1 cut(s) 269
Eco31I GGTCTC 1 cut(s) 99
FauI CCCGC 1 cut(s) 161
Fnu4HI GCNGC 2 cut(s) 65, 68
Fsp4HI GCNGC 2 cut(s) 65, 68
FspBI CTAG 1 cut(s) 289
GlaI GCGC 2 cut(s) 71, 102
GluI GCNGC 2 cut(s) 65, 68
HaeII RGCGCY 1 cut(s) 104
HaeIII GGCC 1 cut(s) 269
HapII CCGG 2 cut(s) 6, 98
HhaI GCGC 2 cut(s) 72, 103
Hin6I GCGC 2 cut(s) 70, 101
HinP1I GCGC 2 cut(s) 70, 101
HinfI GANTC 1 cut(s) 254
HpaII CCGG 2 cut(s) 6, 98
HphI GGTGA 2 cut(s) 10, 260
Hpy188I TCNGA 1 cut(s) 28
Hpy99I CGWCG 2 cut(s) 44, 80
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4IV ACGT 1 cut(s) 42
HpyF10VI GCNNNNNNNGC 1 cut(s) 174
HpyF3I CTNAG 2 cut(s) 49, 237
HpySE526I ACGT 1 cut(s) 42
HspAI GCGC 2 cut(s) 70, 101
Kzo9I GATC 3 cut(s) 15, 28, 127
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 3 cut(s) 19, 111, 116
Lsp1109I GCAGC 1 cut(s) 54
LweI GCATC 2 cut(s) 46, 51
MaeI CTAG 1 cut(s) 289
MaeII ACGT 1 cut(s) 42
MaeIII GTNAC 1 cut(s) 232
MalI GATC 3 cut(s) 17, 30, 129
MboI GATC 3 cut(s) 15, 28, 127
MboII GAAGA 4 cut(s) 193, 196, 220, 223
MnlI CCTC 3 cut(s) 118, 133, 267
MseI TTAA 2 cut(s) 225, 263
MspA1I CMGCKG 1 cut(s) 67
MspI CCGG 2 cut(s) 6, 98
MspR9I CCNGG 1 cut(s) 6
MwoI GCNNNNNNNGC 1 cut(s) 174
NciI CCSGG 1 cut(s) 6
NdeII GATC 3 cut(s) 15, 28, 127
NlaIV GGNNCC 1 cut(s) 10
NmeAIII GCCGAG 1 cut(s) 37
PceI AGGCCT 1 cut(s) 269
PfeI GAWTC 1 cut(s) 254
PflFI GACNNNGTC 1 cut(s) 44
PkrI GCNGC 2 cut(s) 66, 69
PspN4I GGNNCC 1 cut(s) 10
PsrI GAACNNNNNNTAC 1 cut(s) 269
PsyI GACNNNGTC 1 cut(s) 44
SaqAI TTAA 2 cut(s) 225, 263
SatI GCNGC 2 cut(s) 65, 68
Sau3AI GATC 3 cut(s) 15, 28, 127
ScrFI CCNGG 1 cut(s) 6
SetI ASST 5 cut(s) 45, 135, 155, 200, 278
SfaNI GCATC 2 cut(s) 46, 51
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
SseBI AGGCCT 1 cut(s) 269
SsiI CCGC 3 cut(s) 32, 65, 168
SspMI CTAG 1 cut(s) 289
StuI AGGCCT 1 cut(s) 269
StyD4I CCNGG 1 cut(s) 4
TaaI ACNGT 1 cut(s) 122
TaiI ACGT 1 cut(s) 45
TaqII GACCGA 1 cut(s) 81
TauI GCSGC 1 cut(s) 67
TfiI GAWTC 1 cut(s) 254
Tru1I TTAA 2 cut(s) 225, 263
Tru9I TTAA 2 cut(s) 225, 263
TseI GCWGC 1 cut(s) 67
TspGWI ACGGA 1 cut(s) 64
Tth111I GACNNNGTC 1 cut(s) 44
XspI CTAG 1 cut(s) 289
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.