Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001285

Physical Location & Seq

Genomic Coordinates Reverse (-)

3864071 .. 3866681

Gene Structure 2611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G12130.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGGATACTCGTAAGAGAGGACGGCCTGAAGCTGGCTCATTCAACTCCAATGGCGGCGGATACAAGAAGTCTAAGCAAGAGATGGAATCATATTCAACTGGTTTAGGAAGCAAATCGAAGCCATGCACAAAATTTTTCAGTACTTCTGGCTGTCCTTTCGGAGAGAATTGCCATTTCTTGCATTATGTTCCCGGAGGATACAATGCTGTATCGCAGATGACAAATATGGGACCACCCATTCCTCAAGTTTCCAGAAACATGCAAGGTTCTGGTAATGGAGGCCGATTCTCAGGGAGGGGAGAGTCTGGGCCTGGCCATGTCTCTAACTTTGGTGACTCAGCCACTGCCAGATTCAGTGTTGATGCCTCTTTAGCCGGTGCAATCATTGGGAAAGGCGGAGTCAGTTCAAAGCAGATATGTCGTCAGACGGGAGTAAAATTATCAATTCAAGATCACGAGAGAGACCCAAACTTGAAGAACATTGTGCTTGAAGGAACACTTGAGCAGATAAGCGAAGCGAGTGCAATGGTAAAAGATTTGATTGGGAGGCTTAATTCAGCAGCTAAGAAACCACCTGGTGGTGGTCTTGGTGGTGGTGGTGGCATGGGTTCTGAAGGGAAACCACATCCAGGGAGCAACTTCAAGACTAAGATATGTGAGAGATTCTCAAAAGGAAACTGTACATTTGGTGATAGATGTCACTTTGCTCATGGGGAAGCAGAGCTACGCAAGTCAGGAATCGTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900055 GO:1900057 GO:1901363 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

248

Amino Acids

25.95

Weight (kDa)

9.51

Isoelectric Point (pI)

27.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	115 - 178	3.5e-12	KH domain
zf-CCCH	PF00642	214 - 239	1.8e-08	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12130 AT3G12130 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770
fragaria_vesca	FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430
malus_domestica	MD00G1203400.v1.1 MD00G1203500.v1.1 MD03G1016300.v1.1 MD11G1017100.v1.1 MD12G1059600.v1.1 MD14G1058500.v1.1
prunus_persica	Prupe.6G014800_v2.0.a1 Prupe.6G014800_v2.0.a1 Prupe.7G076300_v2.0.a1 Prupe.7G076300_v2.0.a1
pyrus_communis	pycom03g01400 pycom11g01200 pycom12g05140 pycom14g04730
rosa_chinensis	RchiOBHm_Chr3g0479791 RchiOBHm_Chr5g0080561
rosa_laevigata	RLG00000023536 RLG00000036868
rosa_multiflora	Rmu_co8493965.1_g000001 Rmu_sc0000359.1_g000003 Rmu_sc0004329.1_g000008
rosa_roxburghii	Rroxscaffold_1G00002820 Rroxscaffold_6G00401970
rosa_rugosa	Rorug03G0178900 Rorug03G0179000 Rorug05G0470100 Rorug05G0470200
rosa_samantha	Rh3AG229200 Rh3BG262400 Rh3CG259200 Rh3DG255400 Rh5AG523600 Rh5BG545700 Rh5CG568900 Rh5DG555800
rosa_wichuraiana	Rw0G002260 Rw0G015290 Rw0G019210 Rw5G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	578
AciI	CCGC	3 cut(s)	54, 57, 396
AcoI	YGGCCR	1 cut(s)	313
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	48, 633
AdeI	CACNNNGTG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	142, 682
AfiI	CCNNNNNNNGG	4 cut(s)	32, 578, 581, 629
AgsI	TTSAA	7 cut(s)	43, 96, 408, 449, 475, 491, 643
AjnI	CCWGG	3 cut(s)	310, 574, 628
AluBI	AGCT	3 cut(s)	32, 563, 724
AluI	AGCT	3 cut(s)	32, 563, 724
Alw26I	GTCTC	2 cut(s)	325, 456
AlwNI	CAGNNNCTG	1 cut(s)	344
AoxI	GGCC	4 cut(s)	23, 280, 308, 313
ApeKI	GCWGC	1 cut(s)	560
ApoI	RAATTY	1 cut(s)	131
AspS9I	GGNCC	2 cut(s)	230, 308
AsuC2I	CCSGG	1 cut(s)	192
AsuHPI	GGTGA	2 cut(s)	344, 701
AvaII	GGWCC	1 cut(s)	230
BalI	TGGCCA	1 cut(s)	315
BarI	GAAGNNNNNNTAC	2 cut(s)	708, 740
BauI	CACGAG	1 cut(s)	455
BbvI	GCAGC	1 cut(s)	572
BccI	CCATC	1 cut(s)	76
BceAI	ACGGC	1 cut(s)	38
BcgI	CGANNNNNNTGC	4 cut(s)	401, 435, 503, 537
BciT130I	CCWGG	3 cut(s)	312, 576, 630
BciVI	GTATCC	2 cut(s)	53, 191
BcnI	CCSGG	1 cut(s)	192
BcoDI	GTCTC	2 cut(s)	325, 456
BfaI	CTAG	1 cut(s)	745
BfuI	GTATCC	2 cut(s)	53, 191
BisI	GCNGC	2 cut(s)	55, 561
BlsI	GCNGC	2 cut(s)	56, 562
BmcAI	AGTACT	1 cut(s)	142
Bme1390I	CCNGG	4 cut(s)	192, 312, 576, 630
Bme18I	GGWCC	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	230, 308
BmiI	GGNNCC	1 cut(s)	231
BmrFI	CCNGG	4 cut(s)	192, 312, 576, 630
BmsI	GCATC	1 cut(s)	352
BplI	GAGNNNNNCTC	2 cut(s)	650, 682
BpuEI	CTTGAG	2 cut(s)	228, 521
BpuMI	CCSGG	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	629
Bsc4I	CCNNNNNNNGG	4 cut(s)	32, 578, 581, 629
Bse118I	RCCGGY	1 cut(s)	374
Bse1I	ACTGG	1 cut(s)	103
Bse3DI	GCAATG	1 cut(s)	531
BseBI	CCWGG	3 cut(s)	312, 576, 630
BseDI	CCNNGG	1 cut(s)	629
BseGI	GGATG	1 cut(s)	625
BseLI	CCNNNNNNNGG	4 cut(s)	32, 578, 581, 629
BseMI	GCAATG	1 cut(s)	531
BseMII	CTCAG	2 cut(s)	303, 351
BseNI	ACTGG	1 cut(s)	103
BseXI	GCAGC	1 cut(s)	572
BshFI	GGCC	4 cut(s)	25, 282, 310, 315
BsiSI	CCGG	2 cut(s)	192, 375
BslFI	GGGAC	1 cut(s)	243
BslI	CCNNNNNNNGG	4 cut(s)	32, 578, 581, 629
BsmAI	GTCTC	2 cut(s)	325, 456
BsmFI	GGGAC	1 cut(s)	243
BsnI	GGCC	4 cut(s)	25, 282, 310, 315
Bso31I	GGTCTC	1 cut(s)	456
Bsp1407I	TGTACA	1 cut(s)	680
Bsp143I	GATC	1 cut(s)	451
BspACI	CCGC	3 cut(s)	54, 57, 396
BspANI	GGCC	4 cut(s)	25, 282, 310, 315
BspCNI	CTCAG	2 cut(s)	302, 350
BspLI	GGNNCC	1 cut(s)	231
BspTNI	GGTCTC	1 cut(s)	456
BsrDI	GCAATG	1 cut(s)	531
BsrFI	RCCGGY	1 cut(s)	374
BsrGI	TGTACA	1 cut(s)	680
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	1 cut(s)	374
BssECI	CCNNGG	1 cut(s)	629
BssMI	GATC	1 cut(s)	451
BssSI	CACGAG	1 cut(s)	455
Bst2BI	CACGAG	1 cut(s)	455
Bst2UI	CCWGG	3 cut(s)	312, 576, 630
Bst4CI	ACNGT	1 cut(s)	680
BstAUI	TGTACA	1 cut(s)	680
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	5 cut(s)	72, 289, 337, 564, 648
BstF5I	GGATG	1 cut(s)	625
BstKTI	GATC	1 cut(s)	454
BstMAI	GTCTC	2 cut(s)	325, 456
BstMBI	GATC	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	371
BstNI	CCWGG	3 cut(s)	312, 576, 630
BstNSI	RCATGY	1 cut(s)	262
BstSCI	CCNGG	4 cut(s)	190, 310, 574, 628
BstV1I	GCAGC	1 cut(s)	572
BsuI	GTATCC	2 cut(s)	53, 191
BsuRI	GGCC	4 cut(s)	25, 282, 310, 315
BtsCI	GGATG	1 cut(s)	625
BtsI	GCAGTG	1 cut(s)	342
BtsIMutI	CAGTG	2 cut(s)	342, 361
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	344
Cfr10I	RCCGGY	1 cut(s)	374
Cfr13I	GGNCC	2 cut(s)	230, 308
CsiI	ACCWGGT	1 cut(s)	574
Csp6I	GTAC	2 cut(s)	141, 681
CviAII	CATG	5 cut(s)	123, 259, 317, 604, 710
CviQI	GTAC	2 cut(s)	141, 681
DdeI	CTNAG	5 cut(s)	72, 289, 337, 564, 648
DpnI	GATC	1 cut(s)	453
DpnII	GATC	1 cut(s)	451
DraIII	CACNNNGTG	1 cut(s)	578
EaeI	YGGCCR	1 cut(s)	313
EciI	GGCGGA	2 cut(s)	72, 411
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	1 cut(s)	230
Eco57I	CTGAAG	2 cut(s)	48, 633
EcoRII	CCWGG	3 cut(s)	310, 574, 628
FaeI	CATG	5 cut(s)	126, 262, 320, 607, 713
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	243
FatI	CATG	5 cut(s)	122, 258, 316, 603, 709
Fnu4HI	GCNGC	2 cut(s)	55, 561
FokI	GGATG	1 cut(s)	612
Fsp4HI	GCNGC	2 cut(s)	55, 561
FspBI	CTAG	1 cut(s)	745
GluI	GCNGC	2 cut(s)	55, 561
HaeIII	GGCC	4 cut(s)	25, 282, 310, 315
HapII	CCGG	2 cut(s)	192, 375
Hin1II	CATG	5 cut(s)	126, 262, 320, 607, 713
HinfI	GANTC	8 cut(s)	86, 285, 302, 335, 351, 399, 663, 738
HpaII	CCGG	2 cut(s)	192, 375
HphI	GGTGA	2 cut(s)	344, 701
Hpy188I	TCNGA	3 cut(s)	161, 426, 613
Hpy188III	TCNNGA	5 cut(s)	252, 449, 455, 643, 735
HpyAV	CCTTC	2 cut(s)	485, 608
HpyCH4III	ACNGT	1 cut(s)	680
HpyCH4V	TGCA	5 cut(s)	126, 181, 262, 380, 524
HpyF10VI	GCNNNNNNNGC	1 cut(s)	371
HpyF3I	CTNAG	5 cut(s)	72, 289, 337, 564, 648
Hsp92II	CATG	5 cut(s)	126, 262, 320, 607, 713
Kzo9I	GATC	1 cut(s)	451
LmnI	GCTCC	1 cut(s)	633
Lsp1109I	GCAGC	1 cut(s)	572
LweI	GCATC	1 cut(s)	352
MabI	ACCWGGT	1 cut(s)	574
MaeI	CTAG	1 cut(s)	745
MaeIII	GTNAC	2 cut(s)	332, 698
MalI	GATC	1 cut(s)	453
MboI	GATC	1 cut(s)	451
MboII	GAAGA	1 cut(s)	487
MlsI	TGGCCA	1 cut(s)	315
MluCI	AATT	5 cut(s)	131, 166, 437, 444, 553
MluNI	TGGCCA	1 cut(s)	315
MlyI	GAGTC	3 cut(s)	311, 329, 408
MnlI	CCTC	7 cut(s)	11, 188, 252, 272, 288, 376, 540
Mox20I	TGGCCA	1 cut(s)	315
MscI	TGGCCA	1 cut(s)	315
MseI	TTAA	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	315
MspI	CCGG	2 cut(s)	192, 375
MspR9I	CCNGG	4 cut(s)	192, 312, 576, 630
MvaI	CCWGG	3 cut(s)	312, 576, 630
MwoI	GCNNNNNNNGC	1 cut(s)	371
NciI	CCSGG	1 cut(s)	192
NdeII	GATC	1 cut(s)	451
NlaIII	CATG	5 cut(s)	126, 262, 320, 607, 713
NlaIV	GGNNCC	1 cut(s)	231
NmuCI	GTSAC	2 cut(s)	332, 698
NspI	RCATGY	1 cut(s)	262
PfeI	GAWTC	5 cut(s)	86, 285, 351, 663, 738
PflMI	CCANNNNNTGG	1 cut(s)	578
PfoI	TCCNGGA	1 cut(s)	190
PkrI	GCNGC	2 cut(s)	56, 562
PleI	GAGTC	3 cut(s)	310, 329, 407
PpsI	GAGTC	3 cut(s)	310, 329, 407
Psp6I	CCWGG	3 cut(s)	310, 574, 628
PspGI	CCWGG	3 cut(s)	310, 574, 628
PspN4I	GGNNCC	1 cut(s)	231
PspPI	GGNCC	2 cut(s)	230, 308
PstNI	CAGNNNCTG	1 cut(s)	344
RsaI	GTAC	2 cut(s)	142, 682
RsaNI	GTAC	2 cut(s)	141, 681
SaqAI	TTAA	1 cut(s)	552
SatI	GCNGC	2 cut(s)	55, 561
Sau3AI	GATC	1 cut(s)	451
Sau96I	GGNCC	2 cut(s)	230, 308
ScaI	AGTACT	1 cut(s)	142
SchI	GAGTC	3 cut(s)	311, 329, 408
ScrFI	CCNGG	4 cut(s)	192, 312, 576, 630
SetI	ASST	5 cut(s)	34, 268, 565, 577, 726
SexAI	ACCWGGT	1 cut(s)	574
SfaNI	GCATC	1 cut(s)	352
SinI	GGWCC	1 cut(s)	230
SmlI	CTYRAG	2 cut(s)	243, 500
SmoI	CTYRAG	2 cut(s)	243, 500
Sse9I	AATT	5 cut(s)	131, 166, 437, 444, 553
SsiI	CCGC	3 cut(s)	54, 57, 396
SspMI	CTAG	1 cut(s)	745
StyD4I	CCNGG	4 cut(s)	190, 310, 574, 628
TaaI	ACNGT	1 cut(s)	680
TaqI	TCGA	1 cut(s)	116
TasI	AATT	5 cut(s)	131, 166, 437, 444, 553
TatI	WGTACW	2 cut(s)	140, 680
TauI	GCSGC	1 cut(s)	57
TfiI	GAWTC	5 cut(s)	86, 285, 351, 663, 738
Tru1I	TTAA	1 cut(s)	552
Tru9I	TTAA	1 cut(s)	552
TscAI	CASTG	2 cut(s)	349, 361
TseFI	GTSAC	2 cut(s)	332, 698
TseI	GCWGC	1 cut(s)	560
Tsp45I	GTSAC	2 cut(s)	332, 698
TspRI	CASTG	2 cut(s)	349, 361
Van91I	CCANNNNNTGG	1 cut(s)	578
VpaK11BI	GGWCC	1 cut(s)	230
XapI	RAATTY	1 cut(s)	131
XceI	RCATGY	1 cut(s)	262
XspI	CTAG	1 cut(s)	745
ZrmI	AGTACT	1 cut(s)	142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.