pycom03g01400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr3
OG0001285
Physical Location & Seq
Reverse (-)
1052997 .. 1056173
3177 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom03g01400.3

Sequence Viewer

Length: 909 bp
ATGGAGTTCGGAGGAGGTGGCCGGAAGAGAGGCAGGCCGGAAGCTGCGCACTTTAATGGGAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTCAACCTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCCGGGTGCCCTTTTGGTGAAGGATGTCACTTTTTGCATTATGTTCCTGGTGGCATCAAAGCGGTGTCTCAGATGACTGGTAGCAATCCAACCCATCCTCCTCCTCCTAGAAATTCAGCAGCCCCACCATCATTTCCAGATGGTTCTTCTCCTCCAGCTGTCAAGACACGGTTGTGTAATAAGTACAACACGGTTGAAGGTTGCAAGTTTGGGGATAAATGCCATTTTGCCCATGGTGAGTGGGAGCTTGGTAGGCCCACTGCTCAATCCTACGAAGATCCTCGTGCAGGGGCCGGATTTCCAGGCAGGATGGGAGGTCGGATGGAGTCTGCCCCGCCAGCACATGGAGCTGTAGCAAGTTTTGGGGCCACAGCCACGGCTAAGATCAGTGTTGATGCTTCGCTTGCAGGAGCCATTATTGGGAAAAATGGTGTACACTCAAAGCAAATTTGTCGTGTGACTGGTGCAAAGCTTTCCATAAGAGAGCATGAGACAGATCATAAGCTGAGGAACATTGAGCTTGAGGGTACCTTGGACCAGATTAAAGACGCCAGTGCCATGGTTCGTGAGCTCATTGGGAACGTGAGTTCAGGTGCTGGACCTCACAACATGAGGAACCCTGCTATGTCAGCCTCATCTCCGGCAAGCAACTTCAGGACTAAGCTTTGTGAGAACTTTACTAAAGGTACATGCACCTTTGGGGATAGGTGCCACTTTGCACATGGACAAGAAGAGTTGCGCAGGTTGGCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

303

Amino Acids

32.04

Weight (kDa)

9.34

Isoelectric Point (pI)

39.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 48, 893
Acc36I ACCTGC 1 cut(s) 885
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 3 cut(s) 159, 680, 861
AccB7I CCANNNNNTGG 1 cut(s) 497
AciI CCGC 3 cut(s) 66, 215, 488
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 265, 600
AcuI CTGAAG 1 cut(s) 790
AcyI GRCGYC 1 cut(s) 702
AfaI GTAC 4 cut(s) 338, 588, 682, 841
AfiI CCNNNNNNNGG 4 cut(s) 113, 440, 497, 573
AgsI TTSAA 3 cut(s) 73, 104, 350
AjnI CCWGG 3 cut(s) 106, 199, 454
AleI CACNNNNGTG 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 724, 756
AluBI AGCT 9 cut(s) 44, 311, 400, 503, 625, 658, 673, 724, 817
AluI AGCT 9 cut(s) 44, 311, 400, 503, 625, 658, 673, 724, 817
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 2 cut(s) 225, 638
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 5 cut(s) 19, 35, 407, 444, 519
ApeKI GCWGC 2 cut(s) 44, 272
ApoI RAATTY 2 cut(s) 265, 600
Asp718I GGTACC 1 cut(s) 680
AspLEI GCGC 2 cut(s) 49, 894
AspS9I GGNCC 5 cut(s) 408, 444, 519, 688, 752
AsuC2I CCSGG 1 cut(s) 157
AsuHPI GGTGA 2 cut(s) 182, 401
AvaII GGWCC 2 cut(s) 688, 752
BaeGI GKGCMC 1 cut(s) 164
BanI GGYRCC 3 cut(s) 159, 680, 861
BanII GRGCYC 1 cut(s) 726
BauI CACGAG 1 cut(s) 435
Bbv12I GWGCWC 1 cut(s) 726
BbvCI CCTCAGC 1 cut(s) 659
BbvI GCAGC 2 cut(s) 31, 284
BccI CCATC 5 cut(s) 255, 287, 289, 457, 469
BceAI ACGGC 1 cut(s) 546
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 3 cut(s) 108, 201, 456
BcnI CCSGG 1 cut(s) 157
BcoDI GTCTC 2 cut(s) 225, 638
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 885
BisI GCNGC 3 cut(s) 45, 67, 273
BlsI GCNGC 3 cut(s) 46, 68, 274
Bme1390I CCNGG 4 cut(s) 108, 157, 201, 456
Bme18I GGWCC 2 cut(s) 688, 752
BmgT120I GGNCC 5 cut(s) 408, 444, 519, 688, 752
BmiI GGNNCC 7 cut(s) 161, 445, 520, 565, 682, 770, 863
BmrFI CCNGG 4 cut(s) 108, 157, 201, 456
BmsI GCATC 2 cut(s) 216, 538
BpmI CTGGAG 1 cut(s) 291
Bpu10I CCTNAGC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 157
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 4 cut(s) 385, 528, 684, 711
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 4 cut(s) 113, 440, 497, 573
Bse1I ACTGG 3 cut(s) 235, 619, 705
BseBI CCWGG 3 cut(s) 108, 201, 456
BseDI CCNNGG 4 cut(s) 385, 528, 684, 711
BseGI GGATG 4 cut(s) 182, 247, 468, 480
BseLI CCNNNNNNNGG 4 cut(s) 113, 440, 497, 573
BseMII CTCAG 2 cut(s) 236, 650
BseNI ACTGG 3 cut(s) 235, 619, 705
BseRI GAGGAG 4 cut(s) 27, 243, 246, 294
BseSI GKGCMC 1 cut(s) 164
BseXI GCAGC 2 cut(s) 31, 284
BsgI GTGCAG 1 cut(s) 459
BshFI GGCC 5 cut(s) 21, 37, 409, 446, 521
BshNI GGYRCC 3 cut(s) 159, 680, 861
BsiHKAI GWGCWC 1 cut(s) 726
BsiSI CCGG 5 cut(s) 22, 38, 156, 447, 794
BslI CCNNNNNNNGG 4 cut(s) 113, 440, 497, 573
BsmAI GTCTC 2 cut(s) 225, 638
BsnI GGCC 5 cut(s) 21, 37, 409, 446, 521
Bsp1286I GDGCHC 2 cut(s) 164, 726
Bsp1407I TGTACA 1 cut(s) 586
Bsp143I GATC 3 cut(s) 430, 537, 649
Bsp19I CCATGG 2 cut(s) 385, 711
BspACI CCGC 3 cut(s) 66, 215, 488
BspANI GGCC 5 cut(s) 21, 37, 409, 446, 521
BspCNI CTCAG 2 cut(s) 235, 651
BspLI GGNNCC 7 cut(s) 161, 445, 520, 565, 682, 770, 863
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 3 cut(s) 159, 680, 861
BsrGI TGTACA 1 cut(s) 586
BsrI ACTGG 3 cut(s) 235, 619, 705
BssECI CCNNGG 4 cut(s) 385, 528, 684, 711
BssMI GATC 3 cut(s) 430, 537, 649
BssNI GRCGYC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 3 cut(s) 385, 684, 711
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 108, 201, 456
Bst4CI ACNGT 2 cut(s) 324, 346
Bst6I CTCTTC 2 cut(s) 20, 879
BstACI GRCGYC 1 cut(s) 702
BstAUI TGTACA 1 cut(s) 586
BstC8I GCNNGC 4 cut(s) 35, 492, 558, 799
BstDEI CTNAG 4 cut(s) 222, 534, 659, 813
BstDSI CCRYGG 3 cut(s) 385, 528, 711
BstENI CCTNNNNNAGG 2 cut(s) 111, 438
BstF5I GGATG 4 cut(s) 182, 247, 468, 480
BstHHI GCGC 2 cut(s) 49, 894
BstKTI GATC 3 cut(s) 433, 540, 652
BstMAI GTCTC 2 cut(s) 225, 638
BstMBI GATC 3 cut(s) 430, 537, 649
BstMWI GCNNNNNNNGC 5 cut(s) 406, 491, 500, 557, 782
BstNI CCWGG 3 cut(s) 108, 201, 456
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 4 cut(s) 106, 155, 199, 454
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 31, 284
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 5 cut(s) 21, 37, 409, 446, 521
BtgI CCRYGG 3 cut(s) 385, 528, 711
BtsCI GGATG 4 cut(s) 182, 247, 468, 480
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 411, 547, 712
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 4 cut(s) 35, 492, 558, 799
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 2 cut(s) 49, 894
Cfr13I GGNCC 5 cut(s) 408, 444, 519, 688, 752
CseI GACGC 1 cut(s) 710
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 4 cut(s) 337, 587, 681, 840
CviAII CATG 8 cut(s) 132, 386, 497, 641, 712, 763, 843, 875
CviQI GTAC 4 cut(s) 337, 587, 681, 840
DdeI CTNAG 4 cut(s) 222, 534, 659, 813
DpnI GATC 3 cut(s) 432, 539, 651
DpnII GATC 3 cut(s) 430, 537, 649
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 20, 879
EarI CTCTTC 2 cut(s) 20, 879
Ecl136II GAGCTC 1 cut(s) 724
Eco130I CCWWGG 3 cut(s) 385, 684, 711
Eco24I GRGCYC 1 cut(s) 726
Eco47I GGWCC 2 cut(s) 688, 752
Eco53kI GAGCTC 1 cut(s) 724
Eco57I CTGAAG 1 cut(s) 790
EcoICRI GAGCTC 1 cut(s) 724
EcoNI CCTNNNNNAGG 2 cut(s) 111, 438
EcoRII CCWGG 3 cut(s) 106, 199, 454
EcoT14I CCWWGG 3 cut(s) 385, 684, 711
EcoT38I GRGCYC 1 cut(s) 726
ErhI CCWWGG 3 cut(s) 385, 684, 711
FaeI CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
FatI CATG 8 cut(s) 131, 385, 496, 640, 711, 762, 842, 874
FauI CCCGC 1 cut(s) 495
Fnu4HI GCNGC 3 cut(s) 45, 67, 273
FokI GGATG 4 cut(s) 189, 234, 475, 487
FriOI GRGCYC 1 cut(s) 726
Fsp4HI GCNGC 3 cut(s) 45, 67, 273
FspBI CTAG 1 cut(s) 261
FspI TGCGCA 2 cut(s) 48, 893
GlaI GCGC 2 cut(s) 48, 893
GluI GCNGC 3 cut(s) 45, 67, 273
GsuI CTGGAG 1 cut(s) 291
HaeIII GGCC 5 cut(s) 21, 37, 409, 446, 521
HapII CCGG 5 cut(s) 22, 38, 156, 447, 794
HgaI GACGC 1 cut(s) 710
HhaI GCGC 2 cut(s) 49, 894
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
Hin6I GCGC 2 cut(s) 47, 892
HinP1I GCGC 2 cut(s) 47, 892
HindIII AAGCTT 2 cut(s) 623, 815
HinfI GANTC 2 cut(s) 95, 479
HpaII CCGG 5 cut(s) 22, 38, 156, 447, 794
HphI GGTGA 2 cut(s) 182, 401
Hpy166II GTNNAC 2 cut(s) 587, 589
Hpy188I TCNGA 3 cut(s) 11, 225, 474
Hpy188III TCNNGA 5 cut(s) 73, 290, 316, 719, 808
Hpy8I GTNNAC 2 cut(s) 587, 589
HpyAV CCTTC 2 cut(s) 167, 344
HpyCH4III ACNGT 2 cut(s) 324, 346
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 8 cut(s) 135, 190, 357, 440, 560, 620, 846, 872
HpyF10VI GCNNNNNNNGC 5 cut(s) 406, 491, 500, 557, 782
HpyF3I CTNAG 4 cut(s) 222, 534, 659, 813
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
HspAI GCGC 2 cut(s) 47, 892
KpnI GGTACC 1 cut(s) 684
Kzo9I GATC 3 cut(s) 430, 537, 649
LmnI GCTCC 3 cut(s) 397, 500, 563
Lsp1109I GCAGC 2 cut(s) 31, 284
LweI GCATC 2 cut(s) 216, 538
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 2 cut(s) 179, 610
MalI GATC 3 cut(s) 432, 539, 651
MboI GATC 3 cut(s) 430, 537, 649
MboII GAAGA 4 cut(s) 37, 291, 440, 896
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 2 cut(s) 164, 726
MluCI AATT 2 cut(s) 265, 600
MlyI GAGTC 2 cut(s) 104, 488
MmeI TCCRAC 2 cut(s) 266, 452
MseI TTAA 2 cut(s) 54, 696
MslI CAYNNNNRTG 2 cut(s) 54, 325
MspA1I CMGCKG 1 cut(s) 311
MspI CCGG 5 cut(s) 22, 38, 156, 447, 794
MspR9I CCNGG 4 cut(s) 108, 157, 201, 456
MvaI CCWGG 3 cut(s) 108, 201, 456
MwoI GCNNNNNNNGC 5 cut(s) 406, 491, 500, 557, 782
NciI CCSGG 1 cut(s) 157
NcoI CCATGG 2 cut(s) 385, 711
NdeII GATC 3 cut(s) 430, 537, 649
NlaIII CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
NlaIV GGNNCC 7 cut(s) 161, 445, 520, 565, 682, 770, 863
NmuCI GTSAC 2 cut(s) 179, 610
NsbI TGCGCA 2 cut(s) 48, 893
NspI RCATGY 1 cut(s) 846
OliI CACNNNNGTG 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 3 cut(s) 46, 68, 274
PleI GAGTC 2 cut(s) 103, 487
PpsI GAGTC 2 cut(s) 103, 487
Psp124BI GAGCTC 1 cut(s) 726
Psp6I CCWGG 3 cut(s) 106, 199, 454
PspGI CCWGG 3 cut(s) 106, 199, 454
PspN4I GGNNCC 7 cut(s) 161, 445, 520, 565, 682, 770, 863
PspPI GGNCC 5 cut(s) 408, 444, 519, 688, 752
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 430
PvuII CAGCTG 1 cut(s) 311
RsaI GTAC 4 cut(s) 338, 588, 682, 841
RsaNI GTAC 4 cut(s) 337, 587, 681, 840
RseI CAYNNNNRTG 2 cut(s) 54, 325
SacI GAGCTC 1 cut(s) 726
SaqAI TTAA 2 cut(s) 54, 696
SatI GCNGC 3 cut(s) 45, 67, 273
Sau3AI GATC 3 cut(s) 430, 537, 649
Sau96I GGNCC 5 cut(s) 408, 444, 519, 688, 752
SchI GAGTC 2 cut(s) 104, 488
ScrFI CCNGG 4 cut(s) 108, 157, 201, 456
SduI GDGCHC 2 cut(s) 164, 726
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 2 cut(s) 216, 538
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 688, 752
SmiMI CAYNNNNRTG 2 cut(s) 54, 325
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 2 cut(s) 265, 600
SsiI CCGC 3 cut(s) 66, 215, 488
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 726
StyD4I CCNGG 4 cut(s) 106, 155, 199, 454
StyI CCWWGG 3 cut(s) 385, 684, 711
TaaI ACNGT 2 cut(s) 324, 346
TaiI ACGT 1 cut(s) 738
TaqI TCGA 1 cut(s) 125
TasI AATT 2 cut(s) 265, 600
TatI WGTACW 2 cut(s) 336, 586
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 54, 696
Tru9I TTAA 2 cut(s) 54, 696
TscAI CASTG 3 cut(s) 418, 547, 712
TseFI GTSAC 2 cut(s) 179, 610
TseI GCWGC 2 cut(s) 44, 272
Tsp45I GTSAC 2 cut(s) 179, 610
TspRI CASTG 3 cut(s) 418, 547, 712
Van91I CCANNNNNTGG 1 cut(s) 497
VpaK11BI GGWCC 2 cut(s) 688, 752
XagI CCTNNNNNAGG 2 cut(s) 111, 438
XapI RAATTY 2 cut(s) 265, 600
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 3 cut(s) 88, 383, 872
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.