pycom11g01200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr11
OG0001285
Physical Location & Seq
Reverse (-)
966443 .. 969567
3125 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom11g01200.3

Sequence Viewer

Length: 909 bp
ATGGAGTTCGGAGGAGGTGGCCGGAAGAGAGGCAGGCCGGAAGCTGGGCACTTTAATGGCAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTCAACCTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGGTGCCCTTTTGGTGAGGGATGTCACTTCTTGCATTATGTTCCTGGTGGCATCAAAGCGGTGTCTCAGATGACTGGTAGCAACCCAACTCATCCTCCTCCTCCTAGAAATTCAGCAGCCCCACCATCATTTCCAGATGGTTCTTCTCCTCCAACTGTCAAGACACGGTTGTGTAACAAGTACAACACAGTTGAAGGTTGCAAGTTTGGGGATAAATGCCATTTTGCACATGGTGAGTGGGAGCTTGGTAGGCCCACTGCTCAATCCTATGAAGATCCTCGTGCAGGGGGAGGATTTCCAGGCAGGATGGGAGGTCGGATGGAGCCTCCCCCACCAGCACATGGAGCTGTAGCAAGTTTTGGGGCCACAGCCACAGCTAAGATCAGTGTTGACGCTTCACTTGCTGGAGCCATAATTGGGAAAAACGGTGTGCACTCAAAGCAAATTTGTCGCGTGACTGGAGCGAAGCTTTCTATAAGAGAGCATGAAACAGATCATAAGCTGAGGAACATTGAGCTTGAGGGAACCTTGGACCAGATTAAAGACGCCAGTGCCATGGTTCGTGAGCTTATTGGGAACGTGAGTTCAGGTGCTGGAGCTCACAACATGAGGAACCCTGCTATATCAGCCTCATCTCCGGCAAGCAACTTCAAGACTAAGCTTTGTGAGAACTTTACTAAAGGTACATGCACCTTTGGGGATAGGTGCCACTTTGCACATGGACAAGAAGAGTTGCGCAGGTCGGCGATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

303

Amino Acids

31.98

Weight (kDa)

9.32

Isoelectric Point (pI)

39.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 885
AccB1I GGYRCC 2 cut(s) 159, 861
AccB7I CCANNNNNTGG 1 cut(s) 497
AccII CGCG 1 cut(s) 609
AciI CCGC 2 cut(s) 66, 215
AclWI GGATC 1 cut(s) 425
AcoI YGGCCR 1 cut(s) 19
AcsI RAATTY 2 cut(s) 265, 600
AcyI GRCGYC 1 cut(s) 702
AdeI CACNNNGTG 1 cut(s) 389
AfaI GTAC 2 cut(s) 338, 841
AfiI CCNNNNNNNGG 5 cut(s) 44, 113, 440, 497, 573
AgsI TTSAA 4 cut(s) 73, 104, 350, 808
AjnI CCWGG 3 cut(s) 106, 199, 454
AleI CACNNNNGTG 1 cut(s) 325
AloI GAACNNNNNNTCC 2 cut(s) 724, 756
Alw21I GWGCWC 2 cut(s) 591, 757
Alw26I GTCTC 1 cut(s) 225
Alw44I GTGCAC 1 cut(s) 587
AlwI GGATC 1 cut(s) 425
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 4 cut(s) 19, 35, 407, 519
ApaLI GTGCAC 1 cut(s) 587
ApeKI GCWGC 1 cut(s) 272
ApoI RAATTY 2 cut(s) 265, 600
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 3 cut(s) 408, 519, 688
AsuHPI GGTGA 2 cut(s) 182, 401
AvaII GGWCC 1 cut(s) 688
BaeGI GKGCMC 3 cut(s) 51, 164, 591
BanI GGYRCC 2 cut(s) 159, 861
BanII GRGCYC 1 cut(s) 757
BauI CACGAG 1 cut(s) 435
Bbv12I GWGCWC 2 cut(s) 591, 757
BbvCI CCTCAGC 1 cut(s) 659
BbvI GCAGC 1 cut(s) 284
BccI CCATC 4 cut(s) 287, 289, 457, 469
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 3 cut(s) 108, 201, 456
BcoDI GTCTC 1 cut(s) 225
BfaI CTAG 1 cut(s) 261
BfmI CTRYAG 1 cut(s) 504
BfuAI ACCTGC 1 cut(s) 885
BisI GCNGC 2 cut(s) 67, 273
BlsI GCNGC 2 cut(s) 68, 274
Bme1390I CCNGG 3 cut(s) 108, 201, 456
Bme18I GGWCC 1 cut(s) 688
BmgT120I GGNCC 3 cut(s) 408, 519, 688
BmiI GGNNCC 7 cut(s) 161, 480, 520, 565, 682, 770, 863
BmrFI CCNGG 3 cut(s) 108, 201, 456
BmsI GCATC 1 cut(s) 216
BpmI CTGGAG 3 cut(s) 582, 636, 771
Bpu10I CCTNAGC 1 cut(s) 659
BpuEI CTTGAG 1 cut(s) 695
BsaHI GRCGYC 1 cut(s) 702
BsaJI CCNNGG 2 cut(s) 684, 711
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bsc4I CCNNNNNNNGG 5 cut(s) 44, 113, 440, 497, 573
Bse1I ACTGG 3 cut(s) 235, 619, 705
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 3 cut(s) 108, 201, 456
BseDI CCNNGG 2 cut(s) 684, 711
BseGI GGATG 4 cut(s) 182, 247, 468, 480
BseLI CCNNNNNNNGG 5 cut(s) 44, 113, 440, 497, 573
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 2 cut(s) 236, 650
BseNI ACTGG 3 cut(s) 235, 619, 705
BseRI GAGGAG 4 cut(s) 27, 243, 246, 294
BseSI GKGCMC 3 cut(s) 51, 164, 591
BseXI GCAGC 1 cut(s) 284
BseYI CCCAGC 1 cut(s) 44
BsgI GTGCAG 1 cut(s) 459
Bsh1236I CGCG 1 cut(s) 609
BshFI GGCC 4 cut(s) 21, 37, 409, 521
BshNI GGYRCC 2 cut(s) 159, 861
BsiHKAI GWGCWC 2 cut(s) 591, 757
BsiSI CCGG 3 cut(s) 22, 38, 794
BslI CCNNNNNNNGG 5 cut(s) 44, 113, 440, 497, 573
BsmAI GTCTC 1 cut(s) 225
BsnI GGCC 4 cut(s) 21, 37, 409, 521
Bsp1286I GDGCHC 4 cut(s) 51, 164, 591, 757
Bsp143I GATC 3 cut(s) 430, 537, 649
Bsp19I CCATGG 1 cut(s) 711
BspACI CCGC 2 cut(s) 66, 215
BspANI GGCC 4 cut(s) 21, 37, 409, 521
BspCNI CTCAG 2 cut(s) 235, 651
BspFNI CGCG 1 cut(s) 609
BspLI GGNNCC 7 cut(s) 161, 480, 520, 565, 682, 770, 863
BspMI ACCTGC 1 cut(s) 885
BspPI GGATC 1 cut(s) 425
BspT107I GGYRCC 2 cut(s) 159, 861
BsrDI GCAATG 1 cut(s) 67
BsrI ACTGG 3 cut(s) 235, 619, 705
BssECI CCNNGG 2 cut(s) 684, 711
BssMI GATC 3 cut(s) 430, 537, 649
BssNI GRCGYC 1 cut(s) 702
BssSI CACGAG 1 cut(s) 435
BssT1I CCWWGG 2 cut(s) 684, 711
Bst2BI CACGAG 1 cut(s) 435
Bst2UI CCWGG 3 cut(s) 108, 201, 456
Bst4CI ACNGT 4 cut(s) 313, 324, 346, 584
Bst6I CTCTTC 2 cut(s) 20, 879
BstACI GRCGYC 1 cut(s) 702
BstC8I GCNNGC 2 cut(s) 35, 799
BstDEI CTNAG 4 cut(s) 222, 534, 659, 813
BstDSI CCRYGG 1 cut(s) 711
BstENI CCTNNNNNAGG 2 cut(s) 111, 438
BstF5I GGATG 4 cut(s) 182, 247, 468, 480
BstFNI CGCG 1 cut(s) 609
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 3 cut(s) 433, 540, 652
BstMAI GTCTC 1 cut(s) 225
BstMBI GATC 3 cut(s) 430, 537, 649
BstMWI GCNNNNNNNGC 6 cut(s) 66, 406, 500, 557, 595, 782
BstNI CCWGG 3 cut(s) 108, 201, 456
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 3 cut(s) 106, 199, 454
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 3 cut(s) 51, 164, 591
BstUI CGCG 1 cut(s) 609
BstV1I GCAGC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 430
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 1 cut(s) 430
BsuRI GGCC 4 cut(s) 21, 37, 409, 521
BtgI CCRYGG 1 cut(s) 711
BtsCI GGATG 4 cut(s) 182, 247, 468, 480
BtsI GCAGTG 1 cut(s) 411
BtsIMutI CAGTG 3 cut(s) 411, 547, 712
BveI ACCTGC 1 cut(s) 885
Cac8I GCNNGC 2 cut(s) 35, 799
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 1 cut(s) 894
Cfr13I GGNCC 3 cut(s) 408, 519, 688
CseI GACGC 2 cut(s) 557, 710
CsiI ACCWGGT 1 cut(s) 106
Csp6I GTAC 2 cut(s) 337, 840
CviAII CATG 8 cut(s) 132, 386, 497, 641, 712, 763, 843, 875
CviQI GTAC 2 cut(s) 337, 840
DdeI CTNAG 4 cut(s) 222, 534, 659, 813
DpnI GATC 3 cut(s) 432, 539, 651
DpnII GATC 3 cut(s) 430, 537, 649
DraIII CACNNNGTG 1 cut(s) 389
EaeI YGGCCR 1 cut(s) 19
Eam1104I CTCTTC 2 cut(s) 20, 879
EarI CTCTTC 2 cut(s) 20, 879
Ecl136II GAGCTC 1 cut(s) 755
Eco130I CCWWGG 2 cut(s) 684, 711
Eco24I GRGCYC 1 cut(s) 757
Eco47I GGWCC 1 cut(s) 688
Eco53kI GAGCTC 1 cut(s) 755
EcoICRI GAGCTC 1 cut(s) 755
EcoNI CCTNNNNNAGG 2 cut(s) 111, 438
EcoRII CCWGG 3 cut(s) 106, 199, 454
EcoT14I CCWWGG 2 cut(s) 684, 711
EcoT38I GRGCYC 1 cut(s) 757
ErhI CCWWGG 2 cut(s) 684, 711
FaeI CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
FatI CATG 8 cut(s) 131, 385, 496, 640, 711, 762, 842, 874
Fnu4HI GCNGC 2 cut(s) 67, 273
FokI GGATG 4 cut(s) 189, 234, 475, 487
FriOI GRGCYC 1 cut(s) 757
Fsp4HI GCNGC 2 cut(s) 67, 273
FspBI CTAG 1 cut(s) 261
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 1 cut(s) 893
GluI GCNGC 2 cut(s) 67, 273
GsaI CCCAGC 1 cut(s) 48
GsuI CTGGAG 3 cut(s) 582, 636, 771
HaeIII GGCC 4 cut(s) 21, 37, 409, 521
HapII CCGG 3 cut(s) 22, 38, 794
HgaI GACGC 2 cut(s) 557, 710
HhaI GCGC 1 cut(s) 894
Hin1I GRCGYC 1 cut(s) 702
Hin1II CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HincII GTYRAC 1 cut(s) 547
HindII GTYRAC 1 cut(s) 547
HindIII AAGCTT 2 cut(s) 623, 815
HinfI GANTC 1 cut(s) 95
HpaII CCGG 3 cut(s) 22, 38, 794
HphI GGTGA 2 cut(s) 182, 401
Hpy166II GTNNAC 2 cut(s) 547, 589
Hpy188I TCNGA 3 cut(s) 11, 225, 474
Hpy188III TCNNGA 5 cut(s) 73, 290, 316, 719, 808
Hpy8I GTNNAC 2 cut(s) 547, 589
HpyAV CCTTC 1 cut(s) 344
HpyCH4III ACNGT 4 cut(s) 313, 324, 346, 584
HpyCH4IV ACGT 1 cut(s) 735
HpyCH4V TGCA 8 cut(s) 135, 190, 357, 383, 440, 589, 846, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 66, 406, 500, 557, 595, 782
HpyF3I CTNAG 4 cut(s) 222, 534, 659, 813
HpySE526I ACGT 1 cut(s) 735
Hsp92I GRCGYC 1 cut(s) 702
Hsp92II CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
HspAI GCGC 1 cut(s) 892
Kzo9I GATC 3 cut(s) 430, 537, 649
LmnI GCTCC 6 cut(s) 397, 478, 500, 563, 617, 752
Lsp1109I GCAGC 1 cut(s) 284
LweI GCATC 1 cut(s) 216
MabI ACCWGGT 1 cut(s) 106
MaeI CTAG 1 cut(s) 261
MaeII ACGT 1 cut(s) 735
MaeIII GTNAC 3 cut(s) 179, 329, 610
MalI GATC 3 cut(s) 432, 539, 651
MboI GATC 3 cut(s) 430, 537, 649
MboII GAAGA 4 cut(s) 37, 291, 440, 896
MflI RGATCY 1 cut(s) 430
MhlI GDGCHC 4 cut(s) 51, 164, 591, 757
MluCI AATT 3 cut(s) 265, 570, 600
MlyI GAGTC 1 cut(s) 104
MmeI TCCRAC 2 cut(s) 332, 452
MseI TTAA 2 cut(s) 54, 696
MslI CAYNNNNRTG 2 cut(s) 54, 325
MspI CCGG 3 cut(s) 22, 38, 794
MspR9I CCNGG 3 cut(s) 108, 201, 456
MvaI CCWGG 3 cut(s) 108, 201, 456
MvnI CGCG 1 cut(s) 609
MwoI GCNNNNNNNGC 6 cut(s) 66, 406, 500, 557, 595, 782
NcoI CCATGG 1 cut(s) 711
NdeII GATC 3 cut(s) 430, 537, 649
NlaIII CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 846, 878
NlaIV GGNNCC 7 cut(s) 161, 480, 520, 565, 682, 770, 863
NmuCI GTSAC 2 cut(s) 179, 610
NsbI TGCGCA 1 cut(s) 893
NspI RCATGY 1 cut(s) 846
OliI CACNNNNGTG 1 cut(s) 325
PflMI CCANNNNNTGG 1 cut(s) 497
PkrI GCNGC 2 cut(s) 68, 274
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
Psp124BI GAGCTC 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 106, 199, 454
PspFI CCCAGC 1 cut(s) 44
PspGI CCWGG 3 cut(s) 106, 199, 454
PspN4I GGNNCC 7 cut(s) 161, 480, 520, 565, 682, 770, 863
PspPI GGNCC 3 cut(s) 408, 519, 688
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 1 cut(s) 430
RsaI GTAC 2 cut(s) 338, 841
RsaNI GTAC 2 cut(s) 337, 840
RseI CAYNNNNRTG 2 cut(s) 54, 325
SacI GAGCTC 1 cut(s) 757
SaqAI TTAA 2 cut(s) 54, 696
SatI GCNGC 2 cut(s) 67, 273
Sau3AI GATC 3 cut(s) 430, 537, 649
Sau96I GGNCC 3 cut(s) 408, 519, 688
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 3 cut(s) 108, 201, 456
SduI GDGCHC 4 cut(s) 51, 164, 591, 757
SexAI ACCWGGT 1 cut(s) 106
SfaNI GCATC 1 cut(s) 216
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 1 cut(s) 688
SmiMI CAYNNNNRTG 2 cut(s) 54, 325
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 3 cut(s) 265, 570, 600
SsiI CCGC 2 cut(s) 66, 215
SspMI CTAG 1 cut(s) 261
SstI GAGCTC 1 cut(s) 757
StyD4I CCNGG 3 cut(s) 106, 199, 454
StyI CCWWGG 2 cut(s) 684, 711
TaaI ACNGT 4 cut(s) 313, 324, 346, 584
TaiI ACGT 1 cut(s) 738
TaqI TCGA 1 cut(s) 125
TasI AATT 3 cut(s) 265, 570, 600
TatI WGTACW 1 cut(s) 336
TauI GCSGC 1 cut(s) 69
Tru1I TTAA 2 cut(s) 54, 696
Tru9I TTAA 2 cut(s) 54, 696
TscAI CASTG 3 cut(s) 418, 547, 712
TseFI GTSAC 2 cut(s) 179, 610
TseI GCWGC 1 cut(s) 272
Tsp45I GTSAC 2 cut(s) 179, 610
TspDTI ATGAA 2 cut(s) 441, 657
TspRI CASTG 3 cut(s) 418, 547, 712
Van91I CCANNNNNTGG 1 cut(s) 497
VneI GTGCAC 1 cut(s) 587
VpaK11BI GGWCC 1 cut(s) 688
XagI CCTNNNNNAGG 2 cut(s) 111, 438
XapI RAATTY 2 cut(s) 265, 600
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 3 cut(s) 88, 383, 872
XspI CTAG 1 cut(s) 261
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.