Rmu_co8493965.1_g000001

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8493965.1
OG0001285
Physical Location & Seq
Reverse (-)
314 .. 1114
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8493965.1_g000001.1.cds

Sequence Viewer

Length: 801 bp
ctgattggagtgctctgtgattctgttttcagcaccgccggctgtccttttggtgaaagttgccacttcctgcactatgttcctggtggctacaatgctgtggctcaggtgatgaatcttgcacctcctcctcaatcatctagaaactttgctggcccaccatcccattcaaatggttccagtgcaccttctgttaaaacccgcttatgcaataaatataattctgccgaaggctgcaaatttggtgacaaatgccattttgcacatggtgagagggaacttggcaagcccgtttctcagtcatatggccatgatgatccccgtgccgtggcacctgctccaggccatatgggtaattggatggagccagggcatgcacccctgcaagggccggcatctagttttggtgcttcatctactgcgaagatcagtgtagatgcttcacttgcaggggccattattggaaagggtggtgtaaattcaaagcacatttgtcaccagacaggagccaaacttgcaattcgggaccatgagtcagatcccaatctcaggaacattgaactcgagggaacctttgaacagattcagcaagctagtgccttggtgagagagctaattcagagtgtcctcatgtctggccctaacaaaacccctggaagaggaggccccggagcccccgctcctccaggaagcaattataggacaaagctatgcgataattttgcaaaagggacttgcacctttggagaaagatgccactttgcacatggagctgctgaattgcgcaagcctggagtgtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

266

Amino Acids

27.78

Weight (kDa)

8.53

Isoelectric Point (pI)

50.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 343
Acc16I TGCGCA 1 cut(s) 785
Acc36I ACCTGC 1 cut(s) 343
AccB1I GGYRCC 1 cut(s) 331
AccBSI CCGCTC 1 cut(s) 680
AciI CCGC 3 cut(s) 36, 202, 678
AclWI GGATC 2 cut(s) 311, 533
AcoI YGGCCR 1 cut(s) 307
AcsI RAATTY 2 cut(s) 239, 478
AdeI CACNNNGTG 1 cut(s) 269
AfiI CCNNNNNNNGG 6 cut(s) 328, 341, 386, 387, 549, 659
AgsI TTSAA 4 cut(s) 171, 483, 560, 578
AhdI GACNNNNNGTC 1 cut(s) 532
AjnI CCWGG 6 cut(s) 82, 340, 367, 652, 685, 790
AluBI AGCT 4 cut(s) 593, 613, 709, 773
AluI AGCT 4 cut(s) 593, 613, 709, 773
Alw21I GWGCWC 2 cut(s) 15, 187
Alw44I GTGCAC 1 cut(s) 183
AlwI GGATC 2 cut(s) 311, 533
Ama87I CYCGRG 1 cut(s) 563
AoxI GGCC 7 cut(s) 154, 307, 343, 389, 453, 637, 664
ApaLI GTGCAC 1 cut(s) 183
ApeKI GCWGC 2 cut(s) 234, 773
ApoI RAATTY 2 cut(s) 239, 478
Asp700I GAANNNNTTC 1 cut(s) 582
AspLEI GCGC 1 cut(s) 786
AspS9I GGNCC 6 cut(s) 155, 389, 453, 526, 638, 665
AsuC2I CCSGG 1 cut(s) 669
AsuHPI GGTGA 6 cut(s) 65, 121, 257, 281, 488, 616
AvaI CYCGRG 1 cut(s) 563
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 1 cut(s) 187
BalI TGGCCA 1 cut(s) 309
BanI GGYRCC 1 cut(s) 331
BanII GRGCYC 1 cut(s) 676
Bbv12I GWGCWC 2 cut(s) 15, 187
BbvI GCAGC 2 cut(s) 221, 760
BccI CCATC 2 cut(s) 169, 355
BceAI ACGGC 1 cut(s) 311
BcgI CGANNNNNNTGC 2 cut(s) 704, 738
BciT130I CCWGG 6 cut(s) 84, 342, 369, 654, 687, 792
BcnI CCSGG 1 cut(s) 669
BfaI CTAG 3 cut(s) 141, 399, 594
BfuAI ACCTGC 1 cut(s) 343
BisI GCNGC 2 cut(s) 235, 774
BlsI GCNGC 2 cut(s) 236, 775
Bme1390I CCNGG 7 cut(s) 84, 342, 369, 654, 669, 687, 792
Bme18I GGWCC 1 cut(s) 526
BmeRI GACNNNNNGTC 1 cut(s) 532
BmeT110I CYCGRG 1 cut(s) 563
BmgT120I GGNCC 6 cut(s) 155, 389, 453, 526, 638, 665
BmiI GGNNCC 9 cut(s) 178, 333, 366, 454, 508, 527, 571, 667, 673
BmrFI CCNGG 7 cut(s) 84, 342, 369, 654, 669, 687, 792
BmsI GCATC 3 cut(s) 404, 427, 743
BpmI CTGGAG 2 cut(s) 324, 669
Bpu10I CCTNAGC 1 cut(s) 105
BpuMI CCSGG 1 cut(s) 669
BsaBI GATNNNNATC 1 cut(s) 543
BsaJI CCNNGG 5 cut(s) 327, 368, 600, 652, 667
Bsc4I CCNNNNNNNGG 6 cut(s) 328, 341, 386, 387, 549, 659
Bse118I RCCGGY 2 cut(s) 38, 391
Bse1I ACTGG 1 cut(s) 180
Bse8I GATNNNNATC 1 cut(s) 543
BseBI CCWGG 6 cut(s) 84, 342, 369, 654, 687, 792
BseDI CCNNGG 5 cut(s) 327, 368, 600, 652, 667
BseGI GGATG 2 cut(s) 161, 366
BseJI GATNNNNATC 1 cut(s) 543
BseLI CCNNNNNNNGG 6 cut(s) 328, 341, 386, 387, 549, 659
BseMII CTCAG 3 cut(s) 119, 311, 562
BseNI ACTGG 1 cut(s) 180
BseRI GAGGAG 4 cut(s) 117, 120, 672, 675
BseSI GKGCMC 1 cut(s) 187
BseXI GCAGC 2 cut(s) 221, 760
BsgI GTGCAG 1 cut(s) 56
BshFI GGCC 7 cut(s) 156, 309, 345, 391, 455, 639, 666
BshNI GGYRCC 1 cut(s) 331
BsiHKAI GWGCWC 2 cut(s) 15, 187
BsiHKCI CYCGRG 1 cut(s) 563
BsiSI CCGG 3 cut(s) 39, 392, 669
BslFI GGGAC 2 cut(s) 539, 745
BslI CCNNNNNNNGG 6 cut(s) 328, 341, 386, 387, 549, 659
BsmFI GGGAC 2 cut(s) 539, 745
BsnI GGCC 7 cut(s) 156, 309, 345, 391, 455, 639, 666
BsoBI CYCGRG 1 cut(s) 563
Bsp1286I GDGCHC 3 cut(s) 15, 187, 676
Bsp143I GATC 3 cut(s) 316, 426, 538
BspACI CCGC 3 cut(s) 36, 202, 678
BspANI GGCC 7 cut(s) 156, 309, 345, 391, 455, 639, 666
BspCNI CTCAG 3 cut(s) 118, 310, 561
BspLI GGNNCC 9 cut(s) 178, 333, 366, 454, 508, 527, 571, 667, 673
BspMI ACCTGC 1 cut(s) 343
BspPI GGATC 2 cut(s) 311, 533
BspT107I GGYRCC 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 680
BsrFI RCCGGY 2 cut(s) 38, 391
BsrI ACTGG 1 cut(s) 180
BssAI RCCGGY 2 cut(s) 38, 391
BssECI CCNNGG 5 cut(s) 327, 368, 600, 652, 667
BssMI GATC 3 cut(s) 316, 426, 538
BssT1I CCWWGG 1 cut(s) 600
Bst2UI CCWGG 6 cut(s) 84, 342, 369, 654, 687, 792
Bst6I CTCTTC 1 cut(s) 652
BstC8I GCNNGC 7 cut(s) 40, 154, 287, 375, 393, 591, 788
BstDEI CTNAG 3 cut(s) 105, 297, 548
BstDSI CCRYGG 1 cut(s) 327
BstENI CCTNNNNNAGG 2 cut(s) 339, 657
BstF5I GGATG 2 cut(s) 161, 366
BstHHI GCGC 1 cut(s) 786
BstKTI GATC 3 cut(s) 319, 429, 541
BstMBI GATC 3 cut(s) 316, 426, 538
BstMWI GCNNNNNNNGC 4 cut(s) 39, 446, 515, 770
BstNI CCWGG 6 cut(s) 84, 342, 369, 654, 687, 792
BstNSI RCATGY 1 cut(s) 377
BstSCI CCNGG 7 cut(s) 82, 340, 367, 652, 667, 685, 790
BstSLI GKGCMC 1 cut(s) 187
BstV1I GCAGC 2 cut(s) 221, 760
BstX2I RGATCY 1 cut(s) 538
BstXI CCANNNNNNTGG 1 cut(s) 173
BstYI RGATCY 1 cut(s) 538
BsuRI GGCC 7 cut(s) 156, 309, 345, 391, 455, 639, 666
BtgI CCRYGG 1 cut(s) 327
BtsCI GGATG 2 cut(s) 161, 366
BtsIMutI CAGTG 2 cut(s) 187, 436
BveI ACCTGC 1 cut(s) 343
Cac8I GCNNGC 7 cut(s) 40, 154, 287, 375, 393, 591, 788
CfoI GCGC 1 cut(s) 786
Cfr10I RCCGGY 2 cut(s) 38, 391
Cfr13I GGNCC 6 cut(s) 155, 389, 453, 526, 638, 665
CviAII CATG 6 cut(s) 266, 311, 374, 530, 631, 767
DdeI CTNAG 3 cut(s) 105, 297, 548
DpnI GATC 3 cut(s) 318, 428, 540
DpnII GATC 3 cut(s) 316, 426, 538
DraIII CACNNNGTG 1 cut(s) 269
DriI GACNNNNNGTC 1 cut(s) 532
EaeI YGGCCR 1 cut(s) 307
Eam1104I CTCTTC 1 cut(s) 652
Eam1105I GACNNNNNGTC 1 cut(s) 532
EarI CTCTTC 1 cut(s) 652
Eco130I CCWWGG 1 cut(s) 600
Eco24I GRGCYC 1 cut(s) 676
Eco47I GGWCC 1 cut(s) 526
Eco88I CYCGRG 1 cut(s) 563
EcoNI CCTNNNNNAGG 2 cut(s) 339, 657
EcoO109I RGGNCCY 1 cut(s) 665
EcoRII CCWGG 6 cut(s) 82, 340, 367, 652, 685, 790
EcoT14I CCWWGG 1 cut(s) 600
EcoT38I GRGCYC 1 cut(s) 676
ErhI CCWWGG 1 cut(s) 600
FaeI CATG 6 cut(s) 269, 314, 377, 533, 634, 770
FaqI GGGAC 2 cut(s) 539, 745
FatI CATG 6 cut(s) 265, 310, 373, 529, 630, 766
FauI CCCGC 2 cut(s) 209, 685
FauNDI CATATG 2 cut(s) 304, 348
Fnu4HI GCNGC 2 cut(s) 235, 774
FokI GGATG 2 cut(s) 148, 373
FriOI GRGCYC 1 cut(s) 676
Fsp4HI GCNGC 2 cut(s) 235, 774
FspBI CTAG 3 cut(s) 141, 399, 594
FspI TGCGCA 1 cut(s) 785
GlaI GCGC 1 cut(s) 785
GluI GCNGC 2 cut(s) 235, 774
GsuI CTGGAG 2 cut(s) 324, 669
HaeIII GGCC 7 cut(s) 156, 309, 345, 391, 455, 639, 666
HapII CCGG 3 cut(s) 39, 392, 669
HhaI GCGC 1 cut(s) 786
Hin1II CATG 6 cut(s) 269, 314, 377, 533, 634, 770
Hin6I GCGC 1 cut(s) 784
HinP1I GCGC 1 cut(s) 784
HinfI GANTC 4 cut(s) 20, 115, 533, 583
HpaII CCGG 3 cut(s) 39, 392, 669
HphI GGTGA 6 cut(s) 65, 121, 257, 281, 488, 616
Hpy166II GTNNAC 1 cut(s) 185
Hpy188I TCNGA 2 cut(s) 538, 621
Hpy188III TCNNGA 3 cut(s) 141, 524, 550
Hpy8I GTNNAC 1 cut(s) 185
HpyAV CCTTC 2 cut(s) 198, 224
HpyF10VI GCNNNNNNNGC 4 cut(s) 39, 446, 515, 770
HpyF3I CTNAG 3 cut(s) 105, 297, 548
Hsp92II CATG 6 cut(s) 269, 314, 377, 533, 634, 770
HspAI GCGC 1 cut(s) 784
KroI GCCGGC 2 cut(s) 38, 391
KroNI GCCGGC 2 cut(s) 40, 393
Kzo9I GATC 3 cut(s) 316, 426, 538
LmnI GCTCC 6 cut(s) 343, 364, 506, 671, 685, 770
Lsp1109I GCAGC 2 cut(s) 221, 760
LweI GCATC 3 cut(s) 404, 427, 743
MaeI CTAG 3 cut(s) 141, 399, 594
MaeIII GTNAC 2 cut(s) 245, 494
MalI GATC 3 cut(s) 318, 428, 540
MbiI CCGCTC 1 cut(s) 680
MboI GATC 3 cut(s) 316, 426, 538
MboII GAAGA 2 cut(s) 436, 669
MflI RGATCY 1 cut(s) 538
MhlI GDGCHC 3 cut(s) 15, 187, 676
MlsI TGGCCA 1 cut(s) 309
MluCI AATT 9 cut(s) 220, 239, 355, 478, 519, 615, 694, 718, 779
MluNI TGGCCA 1 cut(s) 309
MlyI GAGTC 1 cut(s) 542
MnlI CCTC 9 cut(s) 135, 138, 141, 267, 559, 638, 653, 656, 693
Mox20I TGGCCA 1 cut(s) 309
MroNI GCCGGC 2 cut(s) 38, 391
MroXI GAANNNNTTC 1 cut(s) 582
MscI TGGCCA 1 cut(s) 309
MseI TTAA 1 cut(s) 195
MslI CAYNNNNRTG 1 cut(s) 171
Msp20I TGGCCA 1 cut(s) 309
MspI CCGG 3 cut(s) 39, 392, 669
MspR9I CCNGG 7 cut(s) 84, 342, 369, 654, 669, 687, 792
MvaI CCWGG 6 cut(s) 84, 342, 369, 654, 687, 792
MwoI GCNNNNNNNGC 4 cut(s) 39, 446, 515, 770
NaeI GCCGGC 2 cut(s) 40, 393
NciI CCSGG 1 cut(s) 669
NdeI CATATG 2 cut(s) 304, 348
NdeII GATC 3 cut(s) 316, 426, 538
NgoMIV GCCGGC 2 cut(s) 38, 391
NlaIII CATG 6 cut(s) 269, 314, 377, 533, 634, 770
NlaIV GGNNCC 9 cut(s) 178, 333, 366, 454, 508, 527, 571, 667, 673
NmuCI GTSAC 2 cut(s) 245, 494
NsbI TGCGCA 1 cut(s) 785
NspI RCATGY 1 cut(s) 377
PaeI GCATGC 1 cut(s) 377
PaeR7I CTCGAG 1 cut(s) 563
PaqCI CACCTGC 1 cut(s) 343
PdiI GCCGGC 2 cut(s) 40, 393
PdmI GAANNNNTTC 1 cut(s) 582
PfeI GAWTC 3 cut(s) 20, 115, 583
PfoI TCCNGGA 1 cut(s) 685
PkrI GCNGC 2 cut(s) 236, 775
PleI GAGTC 1 cut(s) 541
PpsI GAGTC 1 cut(s) 541
Psp6I CCWGG 6 cut(s) 82, 340, 367, 652, 685, 790
PspGI CCWGG 6 cut(s) 82, 340, 367, 652, 685, 790
PspN4I GGNNCC 9 cut(s) 178, 333, 366, 454, 508, 527, 571, 667, 673
PspPI GGNCC 6 cut(s) 155, 389, 453, 526, 638, 665
PspXI VCTCGAGB 1 cut(s) 563
PsuI RGATCY 1 cut(s) 538
RseI CAYNNNNRTG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 195
SatI GCNGC 2 cut(s) 235, 774
Sau3AI GATC 3 cut(s) 316, 426, 538
Sau96I GGNCC 6 cut(s) 155, 389, 453, 526, 638, 665
SchI GAGTC 1 cut(s) 542
ScrFI CCNGG 7 cut(s) 84, 342, 369, 654, 669, 687, 792
SduI GDGCHC 3 cut(s) 15, 187, 676
SfaNI GCATC 3 cut(s) 404, 427, 743
Sfr274I CTCGAG 1 cut(s) 563
SinI GGWCC 1 cut(s) 526
SlaI CTCGAG 1 cut(s) 563
SmiMI CAYNNNNRTG 1 cut(s) 171
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
SphI GCATGC 1 cut(s) 377
Sse9I AATT 9 cut(s) 220, 239, 355, 478, 519, 615, 694, 718, 779
SsiI CCGC 3 cut(s) 36, 202, 678
SspMI CTAG 3 cut(s) 141, 399, 594
StyD4I CCNGG 7 cut(s) 82, 340, 367, 652, 667, 685, 790
StyI CCWWGG 1 cut(s) 600
TaqI TCGA 1 cut(s) 564
TasI AATT 9 cut(s) 220, 239, 355, 478, 519, 615, 694, 718, 779
TfiI GAWTC 3 cut(s) 20, 115, 583
Tru1I TTAA 1 cut(s) 195
Tru9I TTAA 1 cut(s) 195
TscAI CASTG 2 cut(s) 187, 436
TseFI GTSAC 2 cut(s) 245, 494
TseI GCWGC 2 cut(s) 234, 773
Tsp45I GTSAC 2 cut(s) 245, 494
TspDTI ATGAA 2 cut(s) 128, 402
TspRI CASTG 2 cut(s) 187, 436
VneI GTGCAC 1 cut(s) 183
VpaK11BI GGWCC 1 cut(s) 526
XagI CCTNNNNNAGG 2 cut(s) 339, 657
XapI RAATTY 2 cut(s) 239, 478
XbaI TCTAGA 1 cut(s) 140
XceI RCATGY 1 cut(s) 377
XcmI CCANNNNNNNNNTGG 2 cut(s) 263, 764
XhoI CTCGAG 1 cut(s) 563
XmnI GAANNNNTTC 1 cut(s) 582
XspI CTAG 3 cut(s) 141, 399, 594
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.