MD03G1016300.v1.1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr03
OG0001285
Physical Location & Seq
Reverse (-)
1298317 .. 1301701
3385 bp
Loading structure...
UTR
Exon/CDS
Intron
MD03G1016300.v1.1.491

Sequence Viewer

Length: 915 bp
ATGATGGAGTTCGGAGGAGGTGGCCGGAAGAGAGGCAGGCCGGAAGCTGCGCACTTTAATGGGAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTCAACCTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCCGGGTGCCCTTTTGGTGAAGGGTGTCACTTTTTGCATTATGTTCCTGGTGGCATCAAAGCAGTGTCTCAGATGACTGGTAGCAATCCAACCCATCCTCCTCCTCCTAGAAATTCAGCAGCCCCGCCATCATTTCCAGATGGTTCTTCTCCTCCAGCTGTCAAGACACGGTTGTGTAATAAGTACAACACAGTTGAAGGTTGCAAGTTTGGGGATAAATGCCATTTTGCCCATGGTGAGTGGGAGCTTGGTAGGCCCACTGCTCAATCCTACGAAGATCCTCGTGCAGGGGCCGGATTTCCAGGCAGGATGGGAGGTCGGATGGAGTCTGCCCCGCCAGCACATGGAGCTGTAGCAAGTTTTGGGGCCACAGCCACGGCTAAGATCAGTGTTGATGCTTCGCTTGCTGGAGCCATTATTGGGAAAAACGGTGTACACTCAAAGCAAATTTGTCGTGTGACCGGAGCGAAGCTTTCTATAAGAGAGCATGAGACAGATCATAAGCTGAGGAACATTGAGCTTGAGGGTACCTTGGACCAGATTAAAGACGCCAGTGCCATGGTTCGTGAGCTCATTGGGAACGTGAGTTCGGGTGCTGGACCTCACAACATGAGGAATCCTGCTATGTCAGCCTCATCTCCGCCGGCAAGCAACTTCAGGACTAAGCTTTGTGAGAACTTTACTAAAGGTACATGCACCTTTGGGGATAGGTGCCACTTTGCACATGGACAAGAAGAGTTGCGCAGGTCGGCGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

305

Amino Acids

32.24

Weight (kDa)

9.34

Isoelectric Point (pI)

41.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 178 - 242 2.1e-11 KH domain
zf-CCCH PF00642 271 - 296 2.2e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 274 - 294 8.6e-06 CCCH-type zinc finger
zf_CCCH_4 PF18345 276 - 294 6.9e-06 Zinc finger domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 51, 899
Acc36I ACCTGC 1 cut(s) 891
Acc65I GGTACC 1 cut(s) 683
AccB1I GGYRCC 3 cut(s) 162, 683, 867
AccB7I CCANNNNNTGG 1 cut(s) 500
AciI CCGC 4 cut(s) 69, 281, 491, 797
AclWI GGATC 1 cut(s) 428
AcoI YGGCCR 1 cut(s) 22
AcsI RAATTY 2 cut(s) 268, 603
AcuI CTGAAG 1 cut(s) 796
AcyI GRCGYC 1 cut(s) 705
AfaI GTAC 4 cut(s) 341, 591, 685, 847
AfiI CCNNNNNNNGG 4 cut(s) 116, 443, 500, 576
AgsI TTSAA 3 cut(s) 76, 107, 353
AjnI CCWGG 3 cut(s) 109, 202, 457
AleI CACNNNNGTG 1 cut(s) 328
AloI GAACNNNNNNTCC 2 cut(s) 727, 759
AluBI AGCT 9 cut(s) 47, 314, 403, 506, 628, 661, 676, 727, 823
AluI AGCT 9 cut(s) 47, 314, 403, 506, 628, 661, 676, 727, 823
Alw21I GWGCWC 1 cut(s) 729
Alw26I GTCTC 2 cut(s) 228, 641
AlwI GGATC 1 cut(s) 428
AoxI GGCC 5 cut(s) 22, 38, 410, 447, 522
ApeKI GCWGC 2 cut(s) 47, 275
ApoI RAATTY 2 cut(s) 268, 603
Asp718I GGTACC 1 cut(s) 683
AspLEI GCGC 2 cut(s) 52, 900
AspS9I GGNCC 5 cut(s) 411, 447, 522, 691, 755
AsuC2I CCSGG 1 cut(s) 160
AsuHPI GGTGA 2 cut(s) 185, 404
AvaII GGWCC 2 cut(s) 691, 755
BaeGI GKGCMC 1 cut(s) 167
BanI GGYRCC 3 cut(s) 162, 683, 867
BanII GRGCYC 1 cut(s) 729
BauI CACGAG 1 cut(s) 438
Bbv12I GWGCWC 1 cut(s) 729
BbvCI CCTCAGC 1 cut(s) 662
BbvI GCAGC 2 cut(s) 34, 287
BccI CCATC 5 cut(s) 258, 290, 292, 460, 472
BceAI ACGGC 1 cut(s) 549
BcgI CGANNNNNNTGC 2 cut(s) 590, 624
BciT130I CCWGG 3 cut(s) 111, 204, 459
BcnI CCSGG 1 cut(s) 160
BcoDI GTCTC 2 cut(s) 228, 641
BfaI CTAG 1 cut(s) 264
BfmI CTRYAG 1 cut(s) 507
BfuAI ACCTGC 1 cut(s) 891
BisI GCNGC 3 cut(s) 48, 70, 276
BlsI GCNGC 3 cut(s) 49, 71, 277
Bme1390I CCNGG 4 cut(s) 111, 160, 204, 459
Bme18I GGWCC 2 cut(s) 691, 755
BmgT120I GGNCC 5 cut(s) 411, 447, 522, 691, 755
BmiI GGNNCC 6 cut(s) 164, 448, 523, 568, 685, 869
BmrFI CCNGG 4 cut(s) 111, 160, 204, 459
BmsI GCATC 2 cut(s) 219, 541
BpmI CTGGAG 2 cut(s) 294, 585
Bpu10I CCTNAGC 1 cut(s) 662
BpuEI CTTGAG 1 cut(s) 698
BpuMI CCSGG 1 cut(s) 160
BsaHI GRCGYC 1 cut(s) 705
BsaJI CCNNGG 4 cut(s) 388, 531, 687, 714
BsaWI WCCGGW 1 cut(s) 617
BsaXI ACNNNNNCTCC 2 cut(s) 238, 268
Bsc4I CCNNNNNNNGG 4 cut(s) 116, 443, 500, 576
Bse118I RCCGGY 1 cut(s) 799
Bse1I ACTGG 2 cut(s) 238, 708
BseBI CCWGG 3 cut(s) 111, 204, 459
BseDI CCNNGG 4 cut(s) 388, 531, 687, 714
BseGI GGATG 3 cut(s) 250, 471, 483
BseLI CCNNNNNNNGG 4 cut(s) 116, 443, 500, 576
BseMII CTCAG 2 cut(s) 239, 653
BseNI ACTGG 2 cut(s) 238, 708
BseRI GAGGAG 4 cut(s) 30, 246, 249, 297
BseSI GKGCMC 1 cut(s) 167
BseXI GCAGC 2 cut(s) 34, 287
BsgI GTGCAG 1 cut(s) 462
BshFI GGCC 5 cut(s) 24, 40, 412, 449, 524
BshNI GGYRCC 3 cut(s) 162, 683, 867
BsiHKAI GWGCWC 1 cut(s) 729
BsiSI CCGG 6 cut(s) 25, 41, 159, 450, 618, 800
BslI CCNNNNNNNGG 4 cut(s) 116, 443, 500, 576
BsmAI GTCTC 2 cut(s) 228, 641
BsnI GGCC 5 cut(s) 24, 40, 412, 449, 524
Bsp1286I GDGCHC 2 cut(s) 167, 729
Bsp1407I TGTACA 1 cut(s) 589
Bsp143I GATC 3 cut(s) 433, 540, 652
Bsp19I CCATGG 2 cut(s) 388, 714
BspACI CCGC 4 cut(s) 69, 281, 491, 797
BspANI GGCC 5 cut(s) 24, 40, 412, 449, 524
BspCNI CTCAG 2 cut(s) 238, 654
BspLI GGNNCC 6 cut(s) 164, 448, 523, 568, 685, 869
BspMI ACCTGC 1 cut(s) 891
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 3 cut(s) 162, 683, 867
BsrFI RCCGGY 1 cut(s) 799
BsrGI TGTACA 1 cut(s) 589
BsrI ACTGG 2 cut(s) 238, 708
BssAI RCCGGY 1 cut(s) 799
BssECI CCNNGG 4 cut(s) 388, 531, 687, 714
BssMI GATC 3 cut(s) 433, 540, 652
BssNI GRCGYC 1 cut(s) 705
BssSI CACGAG 1 cut(s) 438
BssT1I CCWWGG 3 cut(s) 388, 687, 714
Bst2BI CACGAG 1 cut(s) 438
Bst2UI CCWGG 3 cut(s) 111, 204, 459
Bst4CI ACNGT 3 cut(s) 327, 349, 587
Bst6I CTCTTC 2 cut(s) 23, 885
BstACI GRCGYC 1 cut(s) 705
BstAUI TGTACA 1 cut(s) 589
BstC8I GCNNGC 5 cut(s) 38, 495, 561, 801, 805
BstDEI CTNAG 4 cut(s) 225, 537, 662, 819
BstDSI CCRYGG 3 cut(s) 388, 531, 714
BstENI CCTNNNNNAGG 2 cut(s) 114, 441
BstF5I GGATG 3 cut(s) 250, 471, 483
BstHHI GCGC 2 cut(s) 52, 900
BstKTI GATC 3 cut(s) 436, 543, 655
BstMAI GTCTC 2 cut(s) 228, 641
BstMBI GATC 3 cut(s) 433, 540, 652
BstMWI GCNNNNNNNGC 5 cut(s) 409, 494, 503, 560, 785
BstNI CCWGG 3 cut(s) 111, 204, 459
BstNSI RCATGY 1 cut(s) 852
BstSCI CCNGG 4 cut(s) 109, 158, 202, 457
BstSFI CTRYAG 1 cut(s) 507
BstSLI GKGCMC 1 cut(s) 167
BstV1I GCAGC 2 cut(s) 34, 287
BstX2I RGATCY 1 cut(s) 433
BstXI CCANNNNNNTGG 1 cut(s) 715
BstYI RGATCY 1 cut(s) 433
BsuRI GGCC 5 cut(s) 24, 40, 412, 449, 524
BtgI CCRYGG 3 cut(s) 388, 531, 714
BtsCI GGATG 3 cut(s) 250, 471, 483
BtsI GCAGTG 2 cut(s) 225, 414
BtsIMutI CAGTG 4 cut(s) 225, 414, 550, 715
BveI ACCTGC 1 cut(s) 891
Cac8I GCNNGC 5 cut(s) 38, 495, 561, 801, 805
CfoI GCGC 2 cut(s) 52, 900
Cfr10I RCCGGY 1 cut(s) 799
Cfr13I GGNCC 5 cut(s) 411, 447, 522, 691, 755
CseI GACGC 1 cut(s) 713
CsiI ACCWGGT 1 cut(s) 109
Csp6I GTAC 4 cut(s) 340, 590, 684, 846
CviAII CATG 8 cut(s) 135, 389, 500, 644, 715, 766, 849, 881
CviQI GTAC 4 cut(s) 340, 590, 684, 846
DdeI CTNAG 4 cut(s) 225, 537, 662, 819
DpnI GATC 3 cut(s) 435, 542, 654
DpnII GATC 3 cut(s) 433, 540, 652
EaeI YGGCCR 1 cut(s) 22
Eam1104I CTCTTC 2 cut(s) 23, 885
EarI CTCTTC 2 cut(s) 23, 885
EciI GGCGGA 1 cut(s) 786
Ecl136II GAGCTC 1 cut(s) 727
Eco130I CCWWGG 3 cut(s) 388, 687, 714
Eco24I GRGCYC 1 cut(s) 729
Eco47I GGWCC 2 cut(s) 691, 755
Eco53kI GAGCTC 1 cut(s) 727
Eco57I CTGAAG 1 cut(s) 796
EcoICRI GAGCTC 1 cut(s) 727
EcoNI CCTNNNNNAGG 2 cut(s) 114, 441
EcoRII CCWGG 3 cut(s) 109, 202, 457
EcoT14I CCWWGG 3 cut(s) 388, 687, 714
EcoT38I GRGCYC 1 cut(s) 729
ErhI CCWWGG 3 cut(s) 388, 687, 714
FaeI CATG 8 cut(s) 138, 392, 503, 647, 718, 769, 852, 884
FatI CATG 8 cut(s) 134, 388, 499, 643, 714, 765, 848, 880
FauI CCCGC 2 cut(s) 288, 498
Fnu4HI GCNGC 3 cut(s) 48, 70, 276
FokI GGATG 3 cut(s) 237, 478, 490
FriOI GRGCYC 1 cut(s) 729
Fsp4HI GCNGC 3 cut(s) 48, 70, 276
FspBI CTAG 1 cut(s) 264
FspI TGCGCA 2 cut(s) 51, 899
GlaI GCGC 2 cut(s) 51, 899
GluI GCNGC 3 cut(s) 48, 70, 276
GsuI CTGGAG 2 cut(s) 294, 585
HaeIII GGCC 5 cut(s) 24, 40, 412, 449, 524
HapII CCGG 6 cut(s) 25, 41, 159, 450, 618, 800
HgaI GACGC 1 cut(s) 713
HhaI GCGC 2 cut(s) 52, 900
Hin1I GRCGYC 1 cut(s) 705
Hin1II CATG 8 cut(s) 138, 392, 503, 647, 718, 769, 852, 884
Hin6I GCGC 2 cut(s) 50, 898
HinP1I GCGC 2 cut(s) 50, 898
HindIII AAGCTT 2 cut(s) 626, 821
HinfI GANTC 3 cut(s) 98, 482, 772
HpaII CCGG 6 cut(s) 25, 41, 159, 450, 618, 800
HphI GGTGA 2 cut(s) 185, 404
Hpy166II GTNNAC 2 cut(s) 590, 592
Hpy188I TCNGA 3 cut(s) 14, 228, 477
Hpy188III TCNNGA 5 cut(s) 76, 293, 319, 722, 814
Hpy8I GTNNAC 2 cut(s) 590, 592
HpyAV CCTTC 2 cut(s) 170, 347
HpyCH4III ACNGT 3 cut(s) 327, 349, 587
HpyCH4IV ACGT 1 cut(s) 738
HpyCH4V TGCA 6 cut(s) 138, 193, 360, 443, 852, 878
HpyF10VI GCNNNNNNNGC 5 cut(s) 409, 494, 503, 560, 785
HpyF3I CTNAG 4 cut(s) 225, 537, 662, 819
HpySE526I ACGT 1 cut(s) 738
Hsp92I GRCGYC 1 cut(s) 705
Hsp92II CATG 8 cut(s) 138, 392, 503, 647, 718, 769, 852, 884
HspAI GCGC 2 cut(s) 50, 898
KpnI GGTACC 1 cut(s) 687
KroI GCCGGC 1 cut(s) 799
KroNI GCCGGC 1 cut(s) 801
Kzo9I GATC 3 cut(s) 433, 540, 652
LmnI GCTCC 4 cut(s) 400, 503, 566, 620
Lsp1109I GCAGC 2 cut(s) 34, 287
LweI GCATC 2 cut(s) 219, 541
MabI ACCWGGT 1 cut(s) 109
MaeI CTAG 1 cut(s) 264
MaeII ACGT 1 cut(s) 738
MaeIII GTNAC 2 cut(s) 182, 613
MalI GATC 3 cut(s) 435, 542, 654
MboI GATC 3 cut(s) 433, 540, 652
MboII GAAGA 4 cut(s) 40, 294, 443, 902
MflI RGATCY 1 cut(s) 433
MhlI GDGCHC 2 cut(s) 167, 729
MluCI AATT 2 cut(s) 268, 603
MlyI GAGTC 2 cut(s) 107, 491
MmeI TCCRAC 2 cut(s) 269, 455
MroNI GCCGGC 1 cut(s) 799
MseI TTAA 2 cut(s) 57, 699
MslI CAYNNNNRTG 2 cut(s) 57, 328
MspA1I CMGCKG 1 cut(s) 314
MspI CCGG 6 cut(s) 25, 41, 159, 450, 618, 800
MspR9I CCNGG 4 cut(s) 111, 160, 204, 459
MvaI CCWGG 3 cut(s) 111, 204, 459
MwoI GCNNNNNNNGC 5 cut(s) 409, 494, 503, 560, 785
NaeI GCCGGC 1 cut(s) 801
NciI CCSGG 1 cut(s) 160
NcoI CCATGG 2 cut(s) 388, 714
NdeII GATC 3 cut(s) 433, 540, 652
NgoMIV GCCGGC 1 cut(s) 799
NlaIII CATG 8 cut(s) 138, 392, 503, 647, 718, 769, 852, 884
NlaIV GGNNCC 6 cut(s) 164, 448, 523, 568, 685, 869
NmuCI GTSAC 2 cut(s) 182, 613
NsbI TGCGCA 2 cut(s) 51, 899
NspI RCATGY 1 cut(s) 852
OliI CACNNNNGTG 1 cut(s) 328
PdiI GCCGGC 1 cut(s) 801
PfeI GAWTC 1 cut(s) 772
PflMI CCANNNNNTGG 1 cut(s) 500
PkrI GCNGC 3 cut(s) 49, 71, 277
PleI GAGTC 2 cut(s) 106, 490
PpsI GAGTC 2 cut(s) 106, 490
Psp124BI GAGCTC 1 cut(s) 729
Psp6I CCWGG 3 cut(s) 109, 202, 457
PspGI CCWGG 3 cut(s) 109, 202, 457
PspN4I GGNNCC 6 cut(s) 164, 448, 523, 568, 685, 869
PspPI GGNCC 5 cut(s) 411, 447, 522, 691, 755
PsuI RGATCY 1 cut(s) 433
PvuII CAGCTG 1 cut(s) 314
RsaI GTAC 4 cut(s) 341, 591, 685, 847
RsaNI GTAC 4 cut(s) 340, 590, 684, 846
RseI CAYNNNNRTG 2 cut(s) 57, 328
SacI GAGCTC 1 cut(s) 729
SaqAI TTAA 2 cut(s) 57, 699
SatI GCNGC 3 cut(s) 48, 70, 276
Sau3AI GATC 3 cut(s) 433, 540, 652
Sau96I GGNCC 5 cut(s) 411, 447, 522, 691, 755
SchI GAGTC 2 cut(s) 107, 491
ScrFI CCNGG 4 cut(s) 111, 160, 204, 459
SduI GDGCHC 2 cut(s) 167, 729
SexAI ACCWGGT 1 cut(s) 109
SfaNI GCATC 2 cut(s) 219, 541
SfcI CTRYAG 1 cut(s) 507
SinI GGWCC 2 cut(s) 691, 755
SmiMI CAYNNNNRTG 2 cut(s) 57, 328
SmlI CTYRAG 1 cut(s) 677
SmoI CTYRAG 1 cut(s) 677
Sse9I AATT 2 cut(s) 268, 603
SsiI CCGC 4 cut(s) 69, 281, 491, 797
SspMI CTAG 1 cut(s) 264
SstI GAGCTC 1 cut(s) 729
StyD4I CCNGG 4 cut(s) 109, 158, 202, 457
StyI CCWWGG 3 cut(s) 388, 687, 714
TaaI ACNGT 3 cut(s) 327, 349, 587
TaiI ACGT 1 cut(s) 741
TaqI TCGA 1 cut(s) 128
TasI AATT 2 cut(s) 268, 603
TatI WGTACW 2 cut(s) 339, 589
TauI GCSGC 1 cut(s) 72
TfiI GAWTC 1 cut(s) 772
Tru1I TTAA 2 cut(s) 57, 699
Tru9I TTAA 2 cut(s) 57, 699
TscAI CASTG 4 cut(s) 225, 421, 550, 715
TseFI GTSAC 2 cut(s) 182, 613
TseI GCWGC 2 cut(s) 47, 275
Tsp45I GTSAC 2 cut(s) 182, 613
TspRI CASTG 4 cut(s) 225, 421, 550, 715
Van91I CCANNNNNTGG 1 cut(s) 500
VpaK11BI GGWCC 2 cut(s) 691, 755
XagI CCTNNNNNAGG 2 cut(s) 114, 441
XapI RAATTY 2 cut(s) 268, 603
XceI RCATGY 1 cut(s) 852
XcmI CCANNNNNNNNNTGG 3 cut(s) 91, 386, 878
XspI CTAG 1 cut(s) 264
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.