Rw0G002260

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00072
OG0001285
Physical Location & Seq
Forward (+)
132451 .. 135248
2798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G002260.1

Sequence Viewer

Length: 906 bp
ATGGATACTCGTAAACGAGGGAGGAACGAAGCTGGTGGCTTTCATGCTAATGGAGGCTTCAAGAAGAACAAGCAAGAACTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACCGCCGGCTGTCCTTTTGGTGAAAGTTGCCACTTCCTGCACTATGTTCCTGGTGGCTACAATGCTGTGGCTCAGGTGATGAATCTTGCACCTCCTCCTCAATCATCTAGAAACTTTGCAGGCCCACCATCCCATTCAAATGGTTCCAGTGCACCTTCTGTTAAAACCCGCTTATGCAATAAATATAATTCTGCCGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCACATGGTGAGAGGGAACTTGGCAAGCCCGTTTCTCAGTCATATGGCCATGATGATCCCCGTGCCGTGGCTCCTGCTCCAGGCCGTATGGGTAATTGGATGGAGCCAGGGCATGCACCCCTGCAAGGGCCGGCATCTAGTTTTGGTGCTTCATCTACTGTGAAGATCAGTGTAGATGCTTCACTTGCAGGGGCCATTATTGGGAAGGGTGGTGTAAATTCAAAGCACATTTGTCACCAGACAGGAGCCAAACTTGCAATTCGGGACCATGAGTCAGATCCCAATCTCAGGAACATTGAACTCGAGGGAACCTTTGAACAGATTCAGCAAGCTAGTGCCTTGGTGAGAGAGCTAATTCAGAGCGTCTTGATGTCTGGCCCTAACAAAACCCCTGGAAGAGGAGGCCCCGGAGCCCCCGCTCCTCCAGGAAGCAACTATAGGACAAAGCTATGCGATAATTTTGCAAAAGGGACTTGCACCTTTGGAGAAAGATGCCACTTTGCACATGGAGCTGCTGAATTGCGCAAGCCTGGAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

301

Amino Acids

31.68

Weight (kDa)

9.31

Isoelectric Point (pI)

47.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 175 - 239 3.1e-13 KH domain
zf-CCCH PF00642 268 - 292 9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 890
AccBSI CCGCTC 1 cut(s) 785
AciI CCGC 3 cut(s) 141, 307, 783
AclWI GGATC 2 cut(s) 416, 638
AcoI YGGCCR 1 cut(s) 412
AcsI RAATTY 2 cut(s) 344, 583
AdeI CACNNNGTG 1 cut(s) 374
AfiI CCNNNNNNNGG 7 cut(s) 433, 446, 491, 492, 567, 654, 764
AgsI TTSAA 5 cut(s) 61, 276, 588, 665, 683
AhdI GACNNNNNGTC 1 cut(s) 637
AjnI CCWGG 6 cut(s) 187, 445, 472, 757, 790, 895
AluBI AGCT 5 cut(s) 32, 698, 718, 814, 878
AluI AGCT 5 cut(s) 32, 698, 718, 814, 878
Alw21I GWGCWC 1 cut(s) 292
Alw44I GTGCAC 1 cut(s) 288
AlwI GGATC 2 cut(s) 416, 638
Ama87I CYCGRG 1 cut(s) 668
AoxI GGCC 7 cut(s) 259, 412, 448, 494, 558, 742, 769
ApaLI GTGCAC 1 cut(s) 288
ApeKI GCWGC 2 cut(s) 339, 878
ApoI RAATTY 2 cut(s) 344, 583
Asp700I GAANNNNTTC 1 cut(s) 687
AspLEI GCGC 1 cut(s) 891
AspS9I GGNCC 6 cut(s) 260, 494, 558, 631, 743, 770
AsuC2I CCSGG 1 cut(s) 774
AsuHPI GGTGA 6 cut(s) 170, 226, 362, 386, 593, 721
AvaI CYCGRG 1 cut(s) 668
AvaII GGWCC 1 cut(s) 631
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 414
BanII GRGCYC 1 cut(s) 781
Bbv12I GWGCWC 1 cut(s) 292
BbvI GCAGC 2 cut(s) 326, 865
BccI CCATC 2 cut(s) 274, 460
BceAI ACGGC 2 cut(s) 416, 435
BcgI CGANNNNNNTGC 2 cut(s) 809, 843
BciT130I CCWGG 6 cut(s) 189, 447, 474, 759, 792, 897
BcnI CCSGG 1 cut(s) 774
BfaI CTAG 3 cut(s) 246, 504, 699
BfmI CTRYAG 1 cut(s) 802
BisI GCNGC 2 cut(s) 340, 879
BlsI GCNGC 2 cut(s) 341, 880
Bme1390I CCNGG 7 cut(s) 189, 447, 474, 759, 774, 792, 897
Bme18I GGWCC 1 cut(s) 631
BmeRI GACNNNNNGTC 1 cut(s) 637
BmeT110I CYCGRG 1 cut(s) 668
BmgT120I GGNCC 6 cut(s) 260, 494, 558, 631, 743, 770
BmiI GGNNCC 9 cut(s) 283, 438, 471, 559, 613, 632, 676, 772, 778
BmrFI CCNGG 7 cut(s) 189, 447, 474, 759, 774, 792, 897
BmsI GCATC 3 cut(s) 509, 532, 848
BpmI CTGGAG 2 cut(s) 429, 774
Bpu10I CCTNAGC 1 cut(s) 210
BpuMI CCSGG 1 cut(s) 774
BsaBI GATNNNNATC 1 cut(s) 648
BsaJI CCNNGG 5 cut(s) 432, 473, 705, 757, 772
Bsc4I CCNNNNNNNGG 7 cut(s) 433, 446, 491, 492, 567, 654, 764
Bse118I RCCGGY 2 cut(s) 143, 496
Bse1I ACTGG 3 cut(s) 84, 100, 285
Bse8I GATNNNNATC 1 cut(s) 648
BseBI CCWGG 6 cut(s) 189, 447, 474, 759, 792, 897
BseDI CCNNGG 5 cut(s) 432, 473, 705, 757, 772
BseGI GGATG 2 cut(s) 266, 471
BseJI GATNNNNATC 1 cut(s) 648
BseLI CCNNNNNNNGG 7 cut(s) 433, 446, 491, 492, 567, 654, 764
BseMII CTCAG 3 cut(s) 224, 416, 667
BseNI ACTGG 3 cut(s) 84, 100, 285
BseRI GAGGAG 4 cut(s) 222, 225, 777, 780
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 2 cut(s) 326, 865
BsgI GTGCAG 1 cut(s) 161
BshFI GGCC 7 cut(s) 261, 414, 450, 496, 560, 744, 771
BsiHKAI GWGCWC 1 cut(s) 292
BsiHKCI CYCGRG 1 cut(s) 668
BsiSI CCGG 3 cut(s) 144, 497, 774
BslFI GGGAC 2 cut(s) 644, 850
BslI CCNNNNNNNGG 7 cut(s) 433, 446, 491, 492, 567, 654, 764
BsmFI GGGAC 2 cut(s) 644, 850
BsnI GGCC 7 cut(s) 261, 414, 450, 496, 560, 744, 771
BsoBI CYCGRG 1 cut(s) 668
Bsp1286I GDGCHC 2 cut(s) 292, 781
Bsp143I GATC 3 cut(s) 421, 531, 643
BspACI CCGC 3 cut(s) 141, 307, 783
BspANI GGCC 7 cut(s) 261, 414, 450, 496, 560, 744, 771
BspCNI CTCAG 3 cut(s) 223, 415, 666
BspLI GGNNCC 9 cut(s) 283, 438, 471, 559, 613, 632, 676, 772, 778
BspPI GGATC 2 cut(s) 416, 638
BsrBI CCGCTC 1 cut(s) 785
BsrFI RCCGGY 2 cut(s) 143, 496
BsrI ACTGG 3 cut(s) 84, 100, 285
BssAI RCCGGY 2 cut(s) 143, 496
BssECI CCNNGG 5 cut(s) 432, 473, 705, 757, 772
BssMI GATC 3 cut(s) 421, 531, 643
BssT1I CCWWGG 1 cut(s) 705
Bst2UI CCWGG 6 cut(s) 189, 447, 474, 759, 792, 897
Bst4CI ACNGT 1 cut(s) 526
Bst6I CTCTTC 1 cut(s) 757
BstC8I GCNNGC 7 cut(s) 145, 259, 392, 480, 498, 696, 893
BstDEI CTNAG 3 cut(s) 210, 402, 653
BstDSI CCRYGG 1 cut(s) 432
BstENI CCTNNNNNAGG 2 cut(s) 444, 762
BstF5I GGATG 2 cut(s) 266, 471
BstHHI GCGC 1 cut(s) 891
BstKTI GATC 3 cut(s) 424, 534, 646
BstMBI GATC 3 cut(s) 421, 531, 643
BstMWI GCNNNNNNNGC 4 cut(s) 144, 551, 620, 875
BstNI CCWGG 6 cut(s) 189, 447, 474, 759, 792, 897
BstNSI RCATGY 1 cut(s) 482
BstSCI CCNGG 7 cut(s) 187, 445, 472, 757, 772, 790, 895
BstSFI CTRYAG 1 cut(s) 802
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 2 cut(s) 326, 865
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 1 cut(s) 278
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 7 cut(s) 261, 414, 450, 496, 560, 744, 771
BtgI CCRYGG 1 cut(s) 432
BtsCI GGATG 2 cut(s) 266, 471
BtsIMutI CAGTG 2 cut(s) 292, 541
Cac8I GCNNGC 7 cut(s) 145, 259, 392, 480, 498, 696, 893
CfoI GCGC 1 cut(s) 891
Cfr10I RCCGGY 2 cut(s) 143, 496
Cfr13I GGNCC 6 cut(s) 260, 494, 558, 631, 743, 770
CseI GACGC 1 cut(s) 718
CviAII CATG 7 cut(s) 44, 120, 371, 416, 479, 635, 872
DdeI CTNAG 3 cut(s) 210, 402, 653
DpnI GATC 3 cut(s) 423, 533, 645
DpnII GATC 3 cut(s) 421, 531, 643
DraIII CACNNNGTG 1 cut(s) 374
DriI GACNNNNNGTC 1 cut(s) 637
EaeI YGGCCR 1 cut(s) 412
Eam1104I CTCTTC 1 cut(s) 757
Eam1105I GACNNNNNGTC 1 cut(s) 637
EarI CTCTTC 1 cut(s) 757
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 781
Eco47I GGWCC 1 cut(s) 631
Eco88I CYCGRG 1 cut(s) 668
EcoNI CCTNNNNNAGG 2 cut(s) 444, 762
EcoO109I RGGNCCY 1 cut(s) 770
EcoRII CCWGG 6 cut(s) 187, 445, 472, 757, 790, 895
EcoT14I CCWWGG 1 cut(s) 705
EcoT38I GRGCYC 1 cut(s) 781
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 7 cut(s) 47, 123, 374, 419, 482, 638, 875
FaqI GGGAC 2 cut(s) 644, 850
FatI CATG 7 cut(s) 43, 119, 370, 415, 478, 634, 871
FauI CCCGC 2 cut(s) 314, 790
FauNDI CATATG 1 cut(s) 409
Fnu4HI GCNGC 2 cut(s) 340, 879
FokI GGATG 2 cut(s) 253, 478
FriOI GRGCYC 1 cut(s) 781
Fsp4HI GCNGC 2 cut(s) 340, 879
FspBI CTAG 3 cut(s) 246, 504, 699
FspI TGCGCA 1 cut(s) 890
GlaI GCGC 1 cut(s) 890
GluI GCNGC 2 cut(s) 340, 879
GsuI CTGGAG 2 cut(s) 429, 774
HaeIII GGCC 7 cut(s) 261, 414, 450, 496, 560, 744, 771
HapII CCGG 3 cut(s) 144, 497, 774
HgaI GACGC 1 cut(s) 718
HhaI GCGC 1 cut(s) 891
Hin1II CATG 7 cut(s) 47, 123, 374, 419, 482, 638, 875
Hin6I GCGC 1 cut(s) 889
HinP1I GCGC 1 cut(s) 889
HinfI GANTC 4 cut(s) 83, 220, 638, 688
HpaII CCGG 3 cut(s) 144, 497, 774
HphI GGTGA 6 cut(s) 170, 226, 362, 386, 593, 721
Hpy166II GTNNAC 2 cut(s) 14, 290
Hpy188I TCNGA 2 cut(s) 643, 726
Hpy188III TCNNGA 5 cut(s) 61, 246, 629, 655, 733
Hpy8I GTNNAC 2 cut(s) 14, 290
HpyAV CCTTC 3 cut(s) 303, 329, 565
HpyCH4III ACNGT 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 4 cut(s) 144, 551, 620, 875
HpyF3I CTNAG 3 cut(s) 210, 402, 653
Hsp92II CATG 7 cut(s) 47, 123, 374, 419, 482, 638, 875
HspAI GCGC 1 cut(s) 889
KroI GCCGGC 2 cut(s) 143, 496
KroNI GCCGGC 2 cut(s) 145, 498
Kzo9I GATC 3 cut(s) 421, 531, 643
LmnI GCTCC 7 cut(s) 442, 448, 469, 611, 776, 790, 875
Lsp1109I GCAGC 2 cut(s) 326, 865
LweI GCATC 3 cut(s) 509, 532, 848
MaeI CTAG 3 cut(s) 246, 504, 699
MaeIII GTNAC 2 cut(s) 350, 599
MalI GATC 3 cut(s) 423, 533, 645
MbiI CCGCTC 1 cut(s) 785
MboI GATC 3 cut(s) 421, 531, 643
MboII GAAGA 3 cut(s) 76, 541, 774
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 2 cut(s) 292, 781
MlsI TGGCCA 1 cut(s) 414
MluCI AATT 8 cut(s) 325, 344, 460, 583, 624, 720, 823, 884
MluNI TGGCCA 1 cut(s) 414
MlyI GAGTC 2 cut(s) 77, 647
Mox20I TGGCCA 1 cut(s) 414
MroNI GCCGGC 2 cut(s) 143, 496
MroXI GAANNNNTTC 1 cut(s) 687
MscI TGGCCA 1 cut(s) 414
MseI TTAA 1 cut(s) 300
MslI CAYNNNNRTG 2 cut(s) 48, 276
Msp20I TGGCCA 1 cut(s) 414
MspI CCGG 3 cut(s) 144, 497, 774
MspR9I CCNGG 7 cut(s) 189, 447, 474, 759, 774, 792, 897
MvaI CCWGG 6 cut(s) 189, 447, 474, 759, 792, 897
MwoI GCNNNNNNNGC 4 cut(s) 144, 551, 620, 875
NaeI GCCGGC 2 cut(s) 145, 498
NciI CCSGG 1 cut(s) 774
NdeI CATATG 1 cut(s) 409
NdeII GATC 3 cut(s) 421, 531, 643
NgoMIV GCCGGC 2 cut(s) 143, 496
NlaIII CATG 7 cut(s) 47, 123, 374, 419, 482, 638, 875
NlaIV GGNNCC 9 cut(s) 283, 438, 471, 559, 613, 632, 676, 772, 778
NmuCI GTSAC 2 cut(s) 350, 599
NsbI TGCGCA 1 cut(s) 890
NspI RCATGY 1 cut(s) 482
PaeI GCATGC 1 cut(s) 482
PaeR7I CTCGAG 1 cut(s) 668
PdiI GCCGGC 2 cut(s) 145, 498
PdmI GAANNNNTTC 1 cut(s) 687
PfeI GAWTC 2 cut(s) 220, 688
PfoI TCCNGGA 1 cut(s) 790
PkrI GCNGC 2 cut(s) 341, 880
PleI GAGTC 2 cut(s) 77, 646
PpsI GAGTC 2 cut(s) 77, 646
Psp6I CCWGG 6 cut(s) 187, 445, 472, 757, 790, 895
PspGI CCWGG 6 cut(s) 187, 445, 472, 757, 790, 895
PspN4I GGNNCC 9 cut(s) 283, 438, 471, 559, 613, 632, 676, 772, 778
PspPI GGNCC 6 cut(s) 260, 494, 558, 631, 743, 770
PspXI VCTCGAGB 1 cut(s) 668
PsuI RGATCY 1 cut(s) 643
RseI CAYNNNNRTG 2 cut(s) 48, 276
SaqAI TTAA 1 cut(s) 300
SatI GCNGC 2 cut(s) 340, 879
Sau3AI GATC 3 cut(s) 421, 531, 643
Sau96I GGNCC 6 cut(s) 260, 494, 558, 631, 743, 770
SchI GAGTC 2 cut(s) 77, 647
ScrFI CCNGG 7 cut(s) 189, 447, 474, 759, 774, 792, 897
SduI GDGCHC 2 cut(s) 292, 781
SfaNI GCATC 3 cut(s) 509, 532, 848
SfcI CTRYAG 1 cut(s) 802
Sfr274I CTCGAG 1 cut(s) 668
SinI GGWCC 1 cut(s) 631
SlaI CTCGAG 1 cut(s) 668
SmiMI CAYNNNNRTG 2 cut(s) 48, 276
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
SphI GCATGC 1 cut(s) 482
Sse9I AATT 8 cut(s) 325, 344, 460, 583, 624, 720, 823, 884
SsiI CCGC 3 cut(s) 141, 307, 783
SspMI CTAG 3 cut(s) 246, 504, 699
StyD4I CCNGG 7 cut(s) 187, 445, 472, 757, 772, 790, 895
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 1 cut(s) 526
TaqI TCGA 2 cut(s) 113, 669
TasI AATT 8 cut(s) 325, 344, 460, 583, 624, 720, 823, 884
TfiI GAWTC 2 cut(s) 220, 688
Tru1I TTAA 1 cut(s) 300
Tru9I TTAA 1 cut(s) 300
TscAI CASTG 2 cut(s) 292, 541
TseFI GTSAC 2 cut(s) 350, 599
TseI GCWGC 2 cut(s) 339, 878
Tsp45I GTSAC 2 cut(s) 350, 599
TspDTI ATGAA 3 cut(s) 32, 233, 507
TspRI CASTG 2 cut(s) 292, 541
VneI GTGCAC 1 cut(s) 288
VpaK11BI GGWCC 1 cut(s) 631
XagI CCTNNNNNAGG 2 cut(s) 444, 762
XapI RAATTY 2 cut(s) 344, 583
XbaI TCTAGA 1 cut(s) 245
XceI RCATGY 1 cut(s) 482
XcmI CCANNNNNNNNNTGG 2 cut(s) 368, 869
XhoI CTCGAG 1 cut(s) 668
XmnI GAANNNNTTC 1 cut(s) 687
XspI CTAG 3 cut(s) 246, 504, 699
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.