Rorug03G0178900

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000003
OG0001285
Physical Location & Seq
Reverse (-)
15197455 .. 15206386
8932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug03G0178900.1

Sequence Viewer

Length: 1317 bp
ATGGAGAGCTCAACATCAAAGGTGGAGATGTTGAAGCCAGTCCTGCTTAAAGCTGGGATTCCTTTAGCTTTGTCTGTGGCTGGTTTCATCTATGCCAGGATTCTGGCTCAAAGAAGTACTCATTCGAAAGAGTCTTTATTCGAAAGTGATCAGGTAAGCTCCTTGGAGACTAATTCTCAAGAGTCTAGAGATGAGGATAACTTTCATAGCTTTAGCTGTACATGCACACTTACTATGGAAGAAAGTCTGGAGATTAATGATTATAAACCCAAATTGGAAGAAGAGATTTCACGCCTAAGAAGCCGTCTCGAAGATCTTCAAAAGAGAGAATCTGAGTTGGAGATGGAGTTTATCAGCTACTGTGACATGAAAGAGAGAGAATCAGCACTTATGGAGCTACGGAACACGTTGTTATTGGAGATGGCTCGTGTTGAGTTCATGGATAGAGAGGTTTCGTTCATGGAGGCTGAGAGCCACAGGCTTGAGGAGTTGGTAGAAGAATATTTAAAGGTTTTGGAACAATTTGAAGAGTGGAAATCAGAAAATGAATTGCTTCAGAGGCAGGTTAAGATGCTTATGACACAAGCAAGTGTGCAAGCAAGCATAATTCGAGAACAGGATTTGAAGCTTGAAGCCAGAGAAGCAGAAGTTGGGAGGGTTCATGATGAACTAGAAACAAGGAAAACATTCACCAAGACATTGGAGGATGAAATTGGGGAGCTAAGAATGATTTTGGACCAATTGCAGGATGAGAAAAAGGGGCTTTTGGAAAAGCTTGAGTTGAAAGAAAATTCAGCTTCCTCAATCTCCGAGATTGAAGGAGAAAGGATCAAAATTGAGGACCACACTCGGCTTTCAGAGGAATTAGAGCAGCTACAGAAGGATCGTGCAGCCGAGCATATGGAACTGATTAACCTGAGGTGGAGCAATGCGTGCTTAAGGCACGAGTTGATGAAGAACAATGCACAACAAGAACATGGTAATGAGCAGAAGAATAGTCATTTGGAAACAGATTCTGAAGTAAGCATAGAGATTGGGAATTATGGGCTAGAGCAAGAATTAGCTGTTGGCATGGCTTTGGAGCACAATGTCAATGAGCCTTGCTTGGGAAATGTAAGCACTGATCAGGCTTGTTCGAAAAGGCACAAGTTGTTTCGAAGGCTTAGAAGATGGGTGGAAGGCAGTGATCAGAACGGAAGAAGAAGATTGGAGGAGAAAGAAAGGCATGAAGAAGCAGTCAAGTGTTTTGGGAGGCATTCTGTTTCAGATGATGCACAGGAACATCATCATACAAGGAGGTCTTGCTCTAGTGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

438

Amino Acids

51.07

Weight (kDa)

5.02

Isoelectric Point (pI)

62.36

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 553
AclWI GGATC 2 cut(s) 836, 891
AcsI RAATTY 1 cut(s) 790
AcuI CTGAAG 2 cut(s) 539, 1038
AfaI GTAC 2 cut(s) 118, 220
AfiI CCNNNNNNNGG 2 cut(s) 745, 1106
AflII CTTAAG 1 cut(s) 937
AflIII ACRYGT 1 cut(s) 405
AgsI TTSAA 7 cut(s) 34, 320, 527, 625, 632, 784, 818
AjnI CCWGG 1 cut(s) 95
AjuI GAANNNNNNNTTGG 6 cut(s) 633, 665, 986, 1018, 1050, 1082
Alw21I GWGCWC 2 cut(s) 11, 1086
Alw26I GTCTC 2 cut(s) 161, 311
AlwI GGATC 2 cut(s) 836, 891
AlwNI CAGNNNCTG 2 cut(s) 360, 1016
ApeKI GCWGC 2 cut(s) 871, 890
ApoI RAATTY 1 cut(s) 790
AseI ATTAAT 1 cut(s) 255
Asp700I GAANNNNTTC 3 cut(s) 315, 552, 686
AspS9I GGNCC 2 cut(s) 736, 841
AsuHPI GGTGA 1 cut(s) 682
AsuII TTCGAA 4 cut(s) 125, 141, 1136, 1156
AvaII GGWCC 2 cut(s) 736, 841
AxyI CCTNAGG 1 cut(s) 917
BanII GRGCYC 1 cut(s) 11
BauI CACGAG 2 cut(s) 426, 944
Bbv12I GWGCWC 2 cut(s) 11, 1086
BbvI GCAGC 2 cut(s) 883, 902
BccI CCATC 3 cut(s) 337, 415, 1164
BceAI ACGGC 1 cut(s) 288
BciT130I CCWGG 1 cut(s) 97
BclI TGATCA 3 cut(s) 148, 1123, 1186
BcoDI GTCTC 2 cut(s) 161, 311
BfaI CTAG 4 cut(s) 186, 671, 1049, 1308
BfmI CTRYAG 1 cut(s) 875
BfrI CTTAAG 1 cut(s) 937
BfuAI ACCTGC 1 cut(s) 553
BglII AGATCT 1 cut(s) 313
BisI GCNGC 2 cut(s) 872, 891
BlsI GCNGC 2 cut(s) 873, 892
BmcAI AGTACT 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 97
Bme18I GGWCC 2 cut(s) 736, 841
BmgT120I GGNCC 2 cut(s) 736, 841
BmrFI CCNGG 1 cut(s) 97
BmsI GCATC 2 cut(s) 561, 1261
BpmI CTGGAG 1 cut(s) 269
Bpu14I TTCGAA 4 cut(s) 125, 141, 1136, 1156
BpuEI CTTGAG 3 cut(s) 162, 503, 797
BsaJI CCNNGG 1 cut(s) 162
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 745, 1106
Bse1I ACTGG 1 cut(s) 38
Bse21I CCTNAGG 1 cut(s) 917
Bse3DI GCAATG 1 cut(s) 934
BseBI CCWGG 1 cut(s) 97
BseDI CCNNGG 1 cut(s) 162
BseGI GGATG 2 cut(s) 712, 754
BseLI CCNNNNNNNGG 2 cut(s) 745, 1106
BseMI GCAATG 1 cut(s) 934
BseMII CTCAG 3 cut(s) 324, 459, 908
BseNI ACTGG 1 cut(s) 38
BseRI GAGGAG 2 cut(s) 500, 1226
BseXI GCAGC 2 cut(s) 883, 902
BseYI CCCAGC 1 cut(s) 53
BsgI GTGCAG 1 cut(s) 909
BsiHKAI GWGCWC 2 cut(s) 11, 1086
BslI CCNNNNNNNGG 2 cut(s) 745, 1106
BsmAI GTCTC 2 cut(s) 161, 311
BsmBI CGTCTC 1 cut(s) 311
BsmI GAATGC 1 cut(s) 1255
Bsp119I TTCGAA 4 cut(s) 125, 141, 1136, 1156
Bsp1286I GDGCHC 2 cut(s) 11, 1086
Bsp1407I TGTACA 1 cut(s) 218
Bsp143I GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BspCNI CTCAG 3 cut(s) 325, 460, 909
BspHI TCATGA 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 553
BspPI GGATC 2 cut(s) 836, 891
BspT104I TTCGAA 4 cut(s) 125, 141, 1136, 1156
BspTI CTTAAG 1 cut(s) 937
BsrDI GCAATG 1 cut(s) 934
BsrGI TGTACA 1 cut(s) 218
BsrI ACTGG 1 cut(s) 38
BssECI CCNNGG 1 cut(s) 162
BssMI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BssSI CACGAG 2 cut(s) 426, 944
BssT1I CCWWGG 1 cut(s) 162
Bst2BI CACGAG 2 cut(s) 426, 944
Bst2UI CCWGG 1 cut(s) 97
Bst4CI ACNGT 1 cut(s) 362
Bst6I CTCTTC 2 cut(s) 276, 522
BstAFI CTTAAG 1 cut(s) 937
BstAPI GCANNNNNTGC 1 cut(s) 933
BstAUI TGTACA 1 cut(s) 218
BstBI TTCGAA 4 cut(s) 125, 141, 1136, 1156
BstC8I GCNNGC 3 cut(s) 597, 601, 934
BstDEI CTNAG 6 cut(s) 296, 333, 468, 722, 917, 1163
BstF5I GGATG 2 cut(s) 712, 754
BstKTI GATC 6 cut(s) 151, 316, 831, 886, 1126, 1189
BstMAI GTCTC 2 cut(s) 161, 311
BstMBI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
BstMWI GCNNNNNNNGC 6 cut(s) 43, 222, 300, 559, 641, 933
BstNI CCWGG 1 cut(s) 97
BstNSI RCATGY 1 cut(s) 225
BstSCI CCNGG 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 875
BstV1I GCAGC 2 cut(s) 883, 902
BstX2I RGATCY 1 cut(s) 313
BstXI CCANNNNNNTGG 2 cut(s) 103, 700
BstYI RGATCY 1 cut(s) 313
Bsu36I CCTNAGG 1 cut(s) 917
BtsCI GGATG 2 cut(s) 712, 754
BtsI GCAGTG 1 cut(s) 1189
BtsIMutI CAGTG 2 cut(s) 1119, 1189
BveI ACCTGC 1 cut(s) 553
Cac8I GCNNGC 3 cut(s) 597, 601, 934
CaiI CAGNNNCTG 2 cut(s) 360, 1016
CciI TCATGA 1 cut(s) 661
Cfr13I GGNCC 2 cut(s) 736, 841
Csp6I GTAC 2 cut(s) 117, 219
CviAII CATG 9 cut(s) 222, 367, 439, 460, 662, 977, 1072, 1226, 1314
CviQI GTAC 2 cut(s) 117, 219
DdeI CTNAG 6 cut(s) 296, 333, 468, 722, 917, 1163
DpnI GATC 6 cut(s) 150, 315, 830, 885, 1125, 1188
DpnII GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
DraI TTTAAA 1 cut(s) 507
Eam1104I CTCTTC 2 cut(s) 276, 522
EarI CTCTTC 2 cut(s) 276, 522
Ecl136II GAGCTC 1 cut(s) 9
Eco130I CCWWGG 1 cut(s) 162
Eco24I GRGCYC 1 cut(s) 11
Eco47I GGWCC 2 cut(s) 736, 841
Eco53kI GAGCTC 1 cut(s) 9
Eco57I CTGAAG 2 cut(s) 539, 1038
Eco81I CCTNAGG 1 cut(s) 917
EcoICRI GAGCTC 1 cut(s) 9
EcoRII CCWGG 1 cut(s) 95
EcoT14I CCWWGG 1 cut(s) 162
EcoT38I GRGCYC 1 cut(s) 11
ErhI CCWWGG 1 cut(s) 162
Esp3I CGTCTC 1 cut(s) 311
FaeI CATG 9 cut(s) 225, 370, 442, 463, 665, 980, 1075, 1229, 1317
FalI AAGNNNNNCTT 2 cut(s) 1285, 1317
FatI CATG 9 cut(s) 221, 366, 438, 459, 661, 976, 1071, 1225, 1313
FauNDI CATATG 1 cut(s) 900
FbaI TGATCA 3 cut(s) 148, 1123, 1186
Fnu4HI GCNGC 2 cut(s) 872, 891
FokI GGATG 2 cut(s) 719, 761
FriOI GRGCYC 1 cut(s) 11
Fsp4HI GCNGC 2 cut(s) 872, 891
FspBI CTAG 4 cut(s) 186, 671, 1049, 1308
GluI GCNGC 2 cut(s) 872, 891
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 269
Hin1II CATG 9 cut(s) 225, 370, 442, 463, 665, 980, 1075, 1229, 1317
HindIII AAGCTT 2 cut(s) 626, 773
HinfI GANTC 7 cut(s) 58, 100, 131, 182, 329, 380, 1013
HphI GGTGA 1 cut(s) 682
Hpy188I TCNGA 8 cut(s) 334, 541, 558, 811, 859, 1018, 1191, 1267
Hpy188III TCNNGA 6 cut(s) 179, 186, 248, 308, 611, 662
HpyAV CCTTC 4 cut(s) 812, 874, 1152, 1172
HpyCH4III ACNGT 1 cut(s) 362
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 7 cut(s) 225, 595, 745, 890, 965, 1274, 1313
HpyF10VI GCNNNNNNNGC 6 cut(s) 43, 222, 300, 559, 641, 933
HpyF3I CTNAG 6 cut(s) 296, 333, 468, 722, 917, 1163
HpySE526I ACGT 1 cut(s) 407
Hsp92II CATG 9 cut(s) 225, 370, 442, 463, 665, 980, 1075, 1229, 1317
Ksp22I TGATCA 3 cut(s) 148, 1123, 1186
Kzo9I GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
LmnI GCTCC 5 cut(s) 164, 394, 718, 924, 1081
Lsp1109I GCAGC 2 cut(s) 883, 902
LweI GCATC 2 cut(s) 561, 1261
MaeI CTAG 4 cut(s) 186, 671, 1049, 1308
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 1 cut(s) 362
MalI GATC 6 cut(s) 150, 315, 830, 885, 1125, 1188
MboI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
MfeI CAATTG 1 cut(s) 740
MflI RGATCY 1 cut(s) 313
MhlI GDGCHC 2 cut(s) 11, 1086
MlyI GAGTC 2 cut(s) 140, 191
MmeI TCCRAC 1 cut(s) 318
MroXI GAANNNNTTC 3 cut(s) 315, 552, 686
MseI TTAA 6 cut(s) 48, 255, 506, 567, 912, 938
MslI CAYNNNNRTG 1 cut(s) 981
MspCI CTTAAG 1 cut(s) 937
MspR9I CCNGG 1 cut(s) 97
MunI CAATTG 1 cut(s) 740
Mva1269I GAATGC 1 cut(s) 1255
MvaI CCWGG 1 cut(s) 97
MwoI GCNNNNNNNGC 6 cut(s) 43, 222, 300, 559, 641, 933
NdeI CATATG 1 cut(s) 900
NdeII GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
NlaIII CATG 9 cut(s) 225, 370, 442, 463, 665, 980, 1075, 1229, 1317
NmeAIII GCCGAG 2 cut(s) 829, 919
NmuCI GTSAC 1 cut(s) 362
NspI RCATGY 1 cut(s) 225
NspV TTCGAA 4 cut(s) 125, 141, 1136, 1156
PagI TCATGA 1 cut(s) 661
PctI GAATGC 1 cut(s) 1255
PdmI GAANNNNTTC 3 cut(s) 315, 552, 686
PfeI GAWTC 5 cut(s) 58, 100, 329, 380, 1013
PkrI GCNGC 2 cut(s) 873, 892
PleI GAGTC 2 cut(s) 139, 190
PpsI GAGTC 2 cut(s) 139, 190
PshBI ATTAAT 1 cut(s) 255
PsiI TTATAA 1 cut(s) 264
Psp124BI GAGCTC 1 cut(s) 11
Psp6I CCWGG 1 cut(s) 95
PspFI CCCAGC 1 cut(s) 53
PspGI CCWGG 1 cut(s) 95
PspPI GGNCC 2 cut(s) 736, 841
PstNI CAGNNNCTG 2 cut(s) 360, 1016
PsuI RGATCY 1 cut(s) 313
RsaI GTAC 2 cut(s) 118, 220
RsaNI GTAC 2 cut(s) 117, 219
RseI CAYNNNNRTG 1 cut(s) 981
SacI GAGCTC 1 cut(s) 11
SaqAI TTAA 6 cut(s) 48, 255, 506, 567, 912, 938
SatI GCNGC 2 cut(s) 872, 891
Sau3AI GATC 6 cut(s) 148, 313, 828, 883, 1123, 1186
Sau96I GGNCC 2 cut(s) 736, 841
ScaI AGTACT 1 cut(s) 118
SchI GAGTC 2 cut(s) 140, 191
ScrFI CCNGG 1 cut(s) 97
SduI GDGCHC 2 cut(s) 11, 1086
SfaNI GCATC 2 cut(s) 561, 1261
SfcI CTRYAG 1 cut(s) 875
SfuI TTCGAA 4 cut(s) 125, 141, 1136, 1156
SinI GGWCC 2 cut(s) 736, 841
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 4 cut(s) 177, 482, 776, 937
SmoI CTYRAG 4 cut(s) 177, 482, 776, 937
SspI AATATT 1 cut(s) 503
SspMI CTAG 4 cut(s) 186, 671, 1049, 1308
SstI GAGCTC 1 cut(s) 11
StyD4I CCNGG 1 cut(s) 95
StyI CCWWGG 1 cut(s) 162
TaaI ACNGT 1 cut(s) 362
TaiI ACGT 1 cut(s) 410
TaqI TCGA 6 cut(s) 125, 141, 309, 610, 1136, 1156
TatI WGTACW 2 cut(s) 116, 218
TfiI GAWTC 5 cut(s) 58, 100, 329, 380, 1013
Tru1I TTAA 6 cut(s) 48, 255, 506, 567, 912, 938
Tru9I TTAA 6 cut(s) 48, 255, 506, 567, 912, 938
TscAI CASTG 2 cut(s) 1126, 1189
TseFI GTSAC 1 cut(s) 362
TseI GCWGC 2 cut(s) 871, 890
Tsp45I GTSAC 1 cut(s) 362
TspGWI ACGGA 2 cut(s) 415, 1209
TspRI CASTG 2 cut(s) 1126, 1189
Vha464I CTTAAG 1 cut(s) 937
VpaK11BI GGWCC 2 cut(s) 736, 841
VspI ATTAAT 1 cut(s) 255
XapI RAATTY 1 cut(s) 790
XbaI TCTAGA 1 cut(s) 185
XceI RCATGY 1 cut(s) 225
XmnI GAANNNNTTC 3 cut(s) 315, 552, 686
XspI CTAG 4 cut(s) 186, 671, 1049, 1308
ZrmI AGTACT 1 cut(s) 118
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.