FvH4_6g22430

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0001285
Physical Location & Seq
Reverse (-)
16115030 .. 16119121
4092 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g22430.t2

Sequence Viewer

Length: 909 bp
ATGATGGATACTCGTAAACGAGGAAGGAACGAAGCTGCTCCCTTTCATTCTAATGGCGGCTTCAAGAAGAACAAGCAAGAATTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACCGCCGGCTGTCCTTTTGGTGAAAGTTGCCATTTCTTGCACTATGTCCCTGGTGGCTACAATGCTGTGGCTCAGGTTATGAATCTTGCACCTCCTCCTCAATCATCTAGAAACTTTGCTGGCCCACCATCCCATTCAAATGGTTCCAGTGCCCCTACTGCTAAAACCCGCTTATGCAACAAATATAACTCTGCTGAAGGTTGCAAATTTGGTGACAAATGCCATTTTGCACATGGTGAGAGGGAACTTGGTAAGCCCGTTTCTCAATCCTATGGCCATGATGATCCACGTGCCATGGCACCTGCTCCAGGTCGCATGGGTAATTGGATGGAGCCAGGACATGCACCAATGCAAGGCCCAGCATCTAGTTTTGGTGCTTCATCTACTGCAAAGATCAGTGTAGATGCTTCACTTGCAGGAGCTATTATTGGGAAGGGTGGTGTAAATTCAAAGCACATTTGTCACCAGACAGGAGCCAAACTTGCAATCCGGGACCATGAGTCGGATCCCAATCTCAGGAACATTGAACTCGAGGGGACCTTTGAACAGATTCAGCAAGCTAGTACCTTGGTGAGAGAGCTAATTCAGAGCGTCTTGATGTCTGGCCCAAACAAAACCCCTGGAAGAGGAGCCTCTGGAGCTCCTGCTCCTCCAGGAAGCAACTATAGGACAAAGTTATGTGATAATTTTGCAAAAGGGACCTGCACCTTTGGAGAACGATGCCACTTTGCACATGGAGCTGCTGAGTTGCGCAAGCCTGGAATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

303

Amino Acids

31.94

Weight (kDa)

9.31

Isoelectric Point (pI)

45.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 103 - 166 7.3e-13 KH domain
zf-CCCH PF00642 196 - 220 6.2e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 2 cut(s) 451, 851
AccB1I GGYRCC 1 cut(s) 439
AciI CCGC 3 cut(s) 57, 144, 310
AclWI GGATC 3 cut(s) 419, 641, 654
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 2 cut(s) 347, 586
AcuI CTGAAG 1 cut(s) 357
AcvI CACGTG 1 cut(s) 431
AdeI CACNNNGTG 1 cut(s) 377
AfaI GTAC 1 cut(s) 706
AfiI CCNNNNNNNGG 5 cut(s) 449, 494, 643, 657, 767
AgsI TTSAA 5 cut(s) 64, 279, 591, 668, 686
AhdI GACNNNNNGTC 1 cut(s) 640
AjnI CCWGG 6 cut(s) 190, 448, 475, 760, 793, 898
AluBI AGCT 6 cut(s) 35, 563, 701, 721, 782, 881
AluI AGCT 6 cut(s) 35, 563, 701, 721, 782, 881
Alw21I GWGCWC 1 cut(s) 784
AlwI GGATC 3 cut(s) 419, 641, 654
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 4 cut(s) 262, 415, 496, 745
ApeKI GCWGC 2 cut(s) 35, 881
ApoI RAATTY 2 cut(s) 347, 586
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 6 cut(s) 263, 497, 634, 678, 746, 840
AsuC2I CCSGG 1 cut(s) 632
AsuHPI GGTGA 5 cut(s) 173, 365, 389, 596, 724
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 3 cut(s) 634, 678, 840
BaeGI GKGCMC 1 cut(s) 295
BalI TGGCCA 1 cut(s) 417
BamHI GGATCC 1 cut(s) 646
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 784
BbrPI CACGTG 1 cut(s) 431
Bbv12I GWGCWC 1 cut(s) 784
BbvI GCAGC 2 cut(s) 22, 868
BccI CCATC 2 cut(s) 277, 463
BciT130I CCWGG 6 cut(s) 192, 450, 477, 762, 795, 900
BcnI CCSGG 1 cut(s) 632
BfaI CTAG 3 cut(s) 249, 507, 702
BfmI CTRYAG 1 cut(s) 805
BfuAI ACCTGC 2 cut(s) 451, 851
BisI GCNGC 3 cut(s) 36, 58, 882
BlsI GCNGC 3 cut(s) 37, 59, 883
Bme1390I CCNGG 7 cut(s) 192, 450, 477, 632, 762, 795, 900
Bme18I GGWCC 3 cut(s) 634, 678, 840
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 6 cut(s) 263, 497, 634, 678, 746, 840
BmiI GGNNCC 9 cut(s) 286, 441, 474, 616, 635, 648, 679, 772, 841
BmrFI CCNGG 7 cut(s) 192, 450, 477, 632, 762, 795, 900
BmsI GCATC 3 cut(s) 512, 535, 851
BpmI CTGGAG 3 cut(s) 432, 777, 798
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 632
BsaAI YACGTR 1 cut(s) 431
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 4 cut(s) 190, 435, 708, 760
Bsc4I CCNNNNNNNGG 5 cut(s) 449, 494, 643, 657, 767
Bse118I RCCGGY 1 cut(s) 146
Bse1I ACTGG 2 cut(s) 103, 288
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 6 cut(s) 192, 450, 477, 762, 795, 900
BseDI CCNNGG 4 cut(s) 190, 435, 708, 760
BseGI GGATG 2 cut(s) 269, 474
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 5 cut(s) 449, 494, 643, 657, 767
BseMII CTCAG 3 cut(s) 227, 670, 876
BseNI ACTGG 2 cut(s) 103, 288
BseRI GAGGAG 4 cut(s) 225, 228, 780, 783
BseSI GKGCMC 1 cut(s) 295
BseXI GCAGC 2 cut(s) 22, 868
BseYI CCCAGC 1 cut(s) 499
BsgI GTGCAG 1 cut(s) 829
BshFI GGCC 4 cut(s) 264, 417, 498, 747
BshNI GGYRCC 1 cut(s) 439
BsiHKAI GWGCWC 1 cut(s) 784
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 2 cut(s) 147, 631
BslFI GGGAC 4 cut(s) 173, 647, 691, 853
BslI CCNNNNNNNGG 5 cut(s) 449, 494, 643, 657, 767
BsmFI GGGAC 4 cut(s) 173, 647, 691, 853
BsnI GGCC 4 cut(s) 264, 417, 498, 747
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 2 cut(s) 295, 784
Bsp143I GATC 3 cut(s) 424, 534, 646
Bsp19I CCATGG 1 cut(s) 435
BspACI CCGC 3 cut(s) 57, 144, 310
BspANI GGCC 4 cut(s) 264, 417, 498, 747
BspCNI CTCAG 3 cut(s) 226, 669, 877
BspLI GGNNCC 9 cut(s) 286, 441, 474, 616, 635, 648, 679, 772, 841
BspMI ACCTGC 2 cut(s) 451, 851
BspPI GGATC 3 cut(s) 419, 641, 654
BspT107I GGYRCC 1 cut(s) 439
BsrFI RCCGGY 1 cut(s) 146
BsrI ACTGG 2 cut(s) 103, 288
BssAI RCCGGY 1 cut(s) 146
BssECI CCNNGG 4 cut(s) 190, 435, 708, 760
BssMI GATC 3 cut(s) 424, 534, 646
BssT1I CCWWGG 2 cut(s) 435, 708
Bst2UI CCWGG 6 cut(s) 192, 450, 477, 762, 795, 900
Bst6I CTCTTC 1 cut(s) 760
BstBAI YACGTR 1 cut(s) 431
BstC8I GCNNGC 4 cut(s) 148, 262, 699, 896
BstDEI CTNAG 3 cut(s) 213, 656, 885
BstDSI CCRYGG 1 cut(s) 435
BstENI CCTNNNNNAGG 2 cut(s) 447, 765
BstF5I GGATG 2 cut(s) 269, 474
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 3 cut(s) 427, 537, 649
BstMBI GATC 3 cut(s) 424, 534, 646
BstMWI GCNNNNNNNGC 6 cut(s) 147, 299, 554, 623, 779, 878
BstNI CCWGG 6 cut(s) 192, 450, 477, 762, 795, 900
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 7 cut(s) 190, 448, 475, 630, 760, 793, 898
BstSFI CTRYAG 1 cut(s) 805
BstSLI GKGCMC 1 cut(s) 295
BstV1I GCAGC 2 cut(s) 22, 868
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 4 cut(s) 264, 417, 498, 747
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 269, 474
BtsIMutI CAGTG 2 cut(s) 295, 544
BveI ACCTGC 2 cut(s) 451, 851
Cac8I GCNNGC 4 cut(s) 148, 262, 699, 896
CfoI GCGC 1 cut(s) 894
Cfr10I RCCGGY 1 cut(s) 146
Cfr13I GGNCC 6 cut(s) 263, 497, 634, 678, 746, 840
CseI GACGC 1 cut(s) 721
Csp6I GTAC 1 cut(s) 705
CviAII CATG 8 cut(s) 123, 374, 419, 436, 457, 482, 638, 875
CviQI GTAC 1 cut(s) 705
DdeI CTNAG 3 cut(s) 213, 656, 885
DpnI GATC 3 cut(s) 426, 536, 648
DpnII GATC 3 cut(s) 424, 534, 646
DraIII CACNNNGTG 1 cut(s) 377
DriI GACNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 760
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 760
Ecl136II GAGCTC 1 cut(s) 782
Eco130I CCWWGG 2 cut(s) 435, 708
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 3 cut(s) 634, 678, 840
Eco53kI GAGCTC 1 cut(s) 782
Eco57I CTGAAG 1 cut(s) 357
Eco72I CACGTG 1 cut(s) 431
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 1 cut(s) 782
EcoNI CCTNNNNNAGG 2 cut(s) 447, 765
EcoO109I RGGNCCY 2 cut(s) 678, 840
EcoRII CCWGG 6 cut(s) 190, 448, 475, 760, 793, 898
EcoT14I CCWWGG 2 cut(s) 435, 708
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 2 cut(s) 435, 708
FaeI CATG 8 cut(s) 126, 377, 422, 439, 460, 485, 641, 878
FaqI GGGAC 4 cut(s) 173, 647, 691, 853
FatI CATG 8 cut(s) 122, 373, 418, 435, 456, 481, 637, 874
FauI CCCGC 1 cut(s) 317
Fnu4HI GCNGC 3 cut(s) 36, 58, 882
FokI GGATG 2 cut(s) 256, 481
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 3 cut(s) 36, 58, 882
FspBI CTAG 3 cut(s) 249, 507, 702
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 1 cut(s) 893
GluI GCNGC 3 cut(s) 36, 58, 882
GsaI CCCAGC 1 cut(s) 503
GsuI CTGGAG 3 cut(s) 432, 777, 798
HaeIII GGCC 4 cut(s) 264, 417, 498, 747
HapII CCGG 2 cut(s) 147, 631
HgaI GACGC 1 cut(s) 721
HhaI GCGC 1 cut(s) 894
Hin1II CATG 8 cut(s) 126, 377, 422, 439, 460, 485, 641, 878
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HinfI GANTC 4 cut(s) 86, 223, 641, 691
HpaII CCGG 2 cut(s) 147, 631
HphI GGTGA 5 cut(s) 173, 365, 389, 596, 724
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 646, 729
Hpy188III TCNNGA 5 cut(s) 64, 249, 658, 736, 777
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 3 cut(s) 18, 332, 568
HpyCH4IV ACGT 1 cut(s) 430
HpyF10VI GCNNNNNNNGC 6 cut(s) 147, 299, 554, 623, 779, 878
HpyF3I CTNAG 3 cut(s) 213, 656, 885
HpySE526I ACGT 1 cut(s) 430
Hsp92II CATG 8 cut(s) 126, 377, 422, 439, 460, 485, 641, 878
HspAI GCGC 1 cut(s) 892
KroI GCCGGC 1 cut(s) 146
KroNI GCCGGC 1 cut(s) 148
Kzo9I GATC 3 cut(s) 424, 534, 646
Lsp1109I GCAGC 2 cut(s) 22, 868
LweI GCATC 3 cut(s) 512, 535, 851
MaeI CTAG 3 cut(s) 249, 507, 702
MaeII ACGT 1 cut(s) 430
MaeIII GTNAC 2 cut(s) 353, 602
MalI GATC 3 cut(s) 426, 536, 648
MboI GATC 3 cut(s) 424, 534, 646
MboII GAAGA 2 cut(s) 79, 777
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 2 cut(s) 295, 784
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 6 cut(s) 80, 347, 463, 586, 723, 826
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 2 cut(s) 80, 650
MmeI TCCRAC 1 cut(s) 624
MnlI CCTC 9 cut(s) 14, 243, 246, 249, 375, 667, 761, 784, 801
Mox20I TGGCCA 1 cut(s) 417
MroNI GCCGGC 1 cut(s) 146
MroXI GAANNNNTTC 1 cut(s) 690
MscI TGGCCA 1 cut(s) 417
MslI CAYNNNNRTG 2 cut(s) 51, 279
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 2 cut(s) 147, 631
MspR9I CCNGG 7 cut(s) 192, 450, 477, 632, 762, 795, 900
MvaI CCWGG 6 cut(s) 192, 450, 477, 762, 795, 900
MwoI GCNNNNNNNGC 6 cut(s) 147, 299, 554, 623, 779, 878
NaeI GCCGGC 1 cut(s) 148
NciI CCSGG 1 cut(s) 632
NcoI CCATGG 1 cut(s) 435
NdeII GATC 3 cut(s) 424, 534, 646
NgoMIV GCCGGC 1 cut(s) 146
NlaIII CATG 8 cut(s) 126, 377, 422, 439, 460, 485, 641, 878
NlaIV GGNNCC 9 cut(s) 286, 441, 474, 616, 635, 648, 679, 772, 841
NmuCI GTSAC 2 cut(s) 353, 602
NsbI TGCGCA 1 cut(s) 893
NspI RCATGY 1 cut(s) 485
PaeR7I CTCGAG 1 cut(s) 671
PaqCI CACCTGC 1 cut(s) 451
PdiI GCCGGC 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 2 cut(s) 223, 691
PfoI TCCNGGA 2 cut(s) 630, 793
PkrI GCNGC 3 cut(s) 37, 59, 883
PleI GAGTC 2 cut(s) 80, 649
PmaCI CACGTG 1 cut(s) 431
PmlI CACGTG 1 cut(s) 431
PpsI GAGTC 2 cut(s) 80, 649
Ppu21I YACGTR 1 cut(s) 431
PpuMI RGGWCCY 2 cut(s) 678, 840
Psp124BI GAGCTC 1 cut(s) 784
Psp5II RGGWCCY 2 cut(s) 678, 840
Psp6I CCWGG 6 cut(s) 190, 448, 475, 760, 793, 898
PspCI CACGTG 1 cut(s) 431
PspFI CCCAGC 1 cut(s) 499
PspGI CCWGG 6 cut(s) 190, 448, 475, 760, 793, 898
PspN4I GGNNCC 9 cut(s) 286, 441, 474, 616, 635, 648, 679, 772, 841
PspPI GGNCC 6 cut(s) 263, 497, 634, 678, 746, 840
PspPPI RGGWCCY 2 cut(s) 678, 840
PspXI VCTCGAGB 1 cut(s) 671
PsuI RGATCY 1 cut(s) 646
RsaI GTAC 1 cut(s) 706
RsaNI GTAC 1 cut(s) 705
RseI CAYNNNNRTG 2 cut(s) 51, 279
SacI GAGCTC 1 cut(s) 784
SatI GCNGC 3 cut(s) 36, 58, 882
Sau3AI GATC 3 cut(s) 424, 534, 646
Sau96I GGNCC 6 cut(s) 263, 497, 634, 678, 746, 840
SchI GAGTC 2 cut(s) 80, 650
ScrFI CCNGG 7 cut(s) 192, 450, 477, 632, 762, 795, 900
SduI GDGCHC 2 cut(s) 295, 784
SfaNI GCATC 3 cut(s) 512, 535, 851
SfcI CTRYAG 1 cut(s) 805
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 3 cut(s) 634, 678, 840
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 2 cut(s) 51, 279
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
Sse9I AATT 6 cut(s) 80, 347, 463, 586, 723, 826
SsiI CCGC 3 cut(s) 57, 144, 310
SspMI CTAG 3 cut(s) 249, 507, 702
SstI GAGCTC 1 cut(s) 784
StyD4I CCNGG 7 cut(s) 190, 448, 475, 630, 760, 793, 898
StyI CCWWGG 2 cut(s) 435, 708
TaiI ACGT 1 cut(s) 433
TaqI TCGA 2 cut(s) 116, 672
TasI AATT 6 cut(s) 80, 347, 463, 586, 723, 826
TauI GCSGC 1 cut(s) 60
TfiI GAWTC 2 cut(s) 223, 691
TscAI CASTG 2 cut(s) 295, 544
TseFI GTSAC 2 cut(s) 353, 602
TseI GCWGC 2 cut(s) 35, 881
Tsp45I GTSAC 2 cut(s) 353, 602
TspDTI ATGAA 3 cut(s) 35, 236, 510
TspRI CASTG 2 cut(s) 295, 544
VpaK11BI GGWCC 3 cut(s) 634, 678, 840
XagI CCTNNNNNAGG 2 cut(s) 447, 765
XapI RAATTY 2 cut(s) 347, 586
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 2 cut(s) 371, 872
XhoI CTCGAG 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 3 cut(s) 249, 507, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.