Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0001285

Physical Location & Seq

Genomic Coordinates Forward (+)

48999463 .. 48999935

Gene Structure 473 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1203500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

ATGGGAGGTCGGATGGAGTCTGCCCCGCCAGCACATGGAGCTGTAGCAAGTTTTGGGGCCACAGCCACGGCTAAGATCAGTGTTGATGCTTCGCTTGCTGGAGCCATTATTGGGAAAAACGGTGTACACTCAAAGCAAATTTGTCGTGTGACCGGAGCGAAGCTTTCTATAAGAGAGCATGAGACAGATCATAAGCTGAGGAACATTGAGCTTGAGGGTACCTTGGACCAGATTAAAGACGCCAGTGCCATGGTTCGTGAGCTCATTGGGAACGTGAGTTCGGGTGCTGGACCTCACAACATGAGGAATCCTGCTATGTCAGCCTCATCTCCGGCAAGCAACTTCAGGACTAAGCTTTGTGAGAACTTTACTAAAGGTACATGCACCTTTGGGGATAGGTGCCACTTTGCACATGGACAAGAAGAGTTGCGCAGGTCGGCGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

149

Amino Acids

15.65

Weight (kDa)

9.07

Isoelectric Point (pI)

38.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	23 - 87	4.9e-12	KH domain
zf-CCCH	PF00642	115 - 140	8.1e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4	PF18044	118 - 138	3.2e-06	CCCH-type zinc finger
zf_CCCH_4	PF18345	120 - 138	2.6e-06	Zinc finger domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12130 AT3G12130 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770
fragaria_vesca	FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430
malus_domestica	MD00G1203400.v1.1 MD00G1203500.v1.1 MD03G1016300.v1.1 MD11G1017100.v1.1 MD12G1059600.v1.1 MD14G1058500.v1.1
prunus_persica	Prupe.6G014800_v2.0.a1 Prupe.6G014800_v2.0.a1 Prupe.7G076300_v2.0.a1 Prupe.7G076300_v2.0.a1
pyrus_communis	pycom03g01400 pycom11g01200 pycom12g05140 pycom14g04730
rosa_chinensis	RchiOBHm_Chr3g0479791 RchiOBHm_Chr5g0080561
rosa_laevigata	RLG00000023536 RLG00000036868
rosa_multiflora	Rmu_co8493965.1_g000001 Rmu_sc0000359.1_g000003 Rmu_sc0004329.1_g000008
rosa_roxburghii	Rroxscaffold_1G00002820 Rroxscaffold_6G00401970
rosa_rugosa	Rorug03G0178900 Rorug03G0179000 Rorug05G0470100 Rorug05G0470200
rosa_samantha	Rh3AG229200 Rh3BG262400 Rh3CG259200 Rh3DG255400 Rh5AG523600 Rh5BG545700 Rh5CG568900 Rh5DG555800
rosa_wichuraiana	Rw0G002260 Rw0G015290 Rw0G019210 Rw5G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	431
Acc36I	ACCTGC	1 cut(s)	423
Acc65I	GGTACC	1 cut(s)	218
AccB1I	GGYRCC	2 cut(s)	218, 399
AccB7I	CCANNNNNTGG	1 cut(s)	35
AciI	CCGC	1 cut(s)	26
AcsI	RAATTY	1 cut(s)	138
AcuI	CTGAAG	1 cut(s)	328
AcyI	GRCGYC	1 cut(s)	240
AfaI	GTAC	3 cut(s)	126, 220, 379
AfiI	CCNNNNNNNGG	2 cut(s)	35, 111
AloI	GAACNNNNNNTCC	2 cut(s)	262, 294
AluBI	AGCT	6 cut(s)	41, 163, 196, 211, 262, 355
AluI	AGCT	6 cut(s)	41, 163, 196, 211, 262, 355
Alw21I	GWGCWC	1 cut(s)	264
Alw26I	GTCTC	1 cut(s)	176
AoxI	GGCC	1 cut(s)	57
ApoI	RAATTY	1 cut(s)	138
Asp718I	GGTACC	1 cut(s)	218
AspLEI	GCGC	1 cut(s)	432
AspS9I	GGNCC	3 cut(s)	57, 226, 290
AvaII	GGWCC	2 cut(s)	226, 290
BanI	GGYRCC	2 cut(s)	218, 399
BanII	GRGCYC	1 cut(s)	264
Bbv12I	GWGCWC	1 cut(s)	264
BbvCI	CCTCAGC	1 cut(s)	197
BccI	CCATC	1 cut(s)	7
BceAI	ACGGC	1 cut(s)	84
BcgI	CGANNNNNNTGC	2 cut(s)	125, 159
BcoDI	GTCTC	1 cut(s)	176
BfmI	CTRYAG	1 cut(s)	42
BfuAI	ACCTGC	1 cut(s)	423
Bme18I	GGWCC	2 cut(s)	226, 290
BmgT120I	GGNCC	3 cut(s)	57, 226, 290
BmiI	GGNNCC	4 cut(s)	58, 103, 220, 401
BmsI	GCATC	1 cut(s)	76
BpmI	CTGGAG	1 cut(s)	120
Bpu10I	CCTNAGC	1 cut(s)	197
BpuEI	CTTGAG	1 cut(s)	233
BsaHI	GRCGYC	1 cut(s)	240
BsaJI	CCNNGG	3 cut(s)	66, 222, 249
BsaWI	WCCGGW	1 cut(s)	152
Bsc4I	CCNNNNNNNGG	2 cut(s)	35, 111
Bse1I	ACTGG	1 cut(s)	243
BseDI	CCNNGG	3 cut(s)	66, 222, 249
BseGI	GGATG	1 cut(s)	18
BseLI	CCNNNNNNNGG	2 cut(s)	35, 111
BseMII	CTCAG	1 cut(s)	188
BseNI	ACTGG	1 cut(s)	243
BshFI	GGCC	1 cut(s)	59
BshNI	GGYRCC	2 cut(s)	218, 399
BsiHKAI	GWGCWC	1 cut(s)	264
BsiSI	CCGG	2 cut(s)	153, 332
BslI	CCNNNNNNNGG	2 cut(s)	35, 111
BsmAI	GTCTC	1 cut(s)	176
BsnI	GGCC	1 cut(s)	59
Bsp1286I	GDGCHC	1 cut(s)	264
Bsp1407I	TGTACA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	75, 187
Bsp19I	CCATGG	1 cut(s)	249
BspACI	CCGC	1 cut(s)	26
BspANI	GGCC	1 cut(s)	59
BspCNI	CTCAG	1 cut(s)	189
BspLI	GGNNCC	4 cut(s)	58, 103, 220, 401
BspMI	ACCTGC	1 cut(s)	423
BspT107I	GGYRCC	2 cut(s)	218, 399
BsrGI	TGTACA	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	243
BssECI	CCNNGG	3 cut(s)	66, 222, 249
BssMI	GATC	2 cut(s)	75, 187
BssNI	GRCGYC	1 cut(s)	240
BssT1I	CCWWGG	2 cut(s)	222, 249
Bst4CI	ACNGT	1 cut(s)	122
Bst6I	CTCTTC	1 cut(s)	417
BstACI	GRCGYC	1 cut(s)	240
BstAUI	TGTACA	1 cut(s)	124
BstC8I	GCNNGC	3 cut(s)	30, 96, 337
BstDEI	CTNAG	3 cut(s)	72, 197, 351
BstDSI	CCRYGG	2 cut(s)	66, 249
BstF5I	GGATG	1 cut(s)	18
BstHHI	GCGC	1 cut(s)	432
BstKTI	GATC	2 cut(s)	78, 190
BstMAI	GTCTC	1 cut(s)	176
BstMBI	GATC	2 cut(s)	75, 187
BstMWI	GCNNNNNNNGC	4 cut(s)	29, 38, 95, 320
BstNSI	RCATGY	1 cut(s)	384
BstSFI	CTRYAG	1 cut(s)	42
BstXI	CCANNNNNNTGG	1 cut(s)	250
BsuRI	GGCC	1 cut(s)	59
BtgI	CCRYGG	2 cut(s)	66, 249
BtsCI	GGATG	1 cut(s)	18
BtsIMutI	CAGTG	2 cut(s)	85, 250
BveI	ACCTGC	1 cut(s)	423
Cac8I	GCNNGC	3 cut(s)	30, 96, 337
CfoI	GCGC	1 cut(s)	432
Cfr13I	GGNCC	3 cut(s)	57, 226, 290
CseI	GACGC	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	125, 219, 378
CviAII	CATG	6 cut(s)	35, 179, 250, 301, 381, 413
CviQI	GTAC	3 cut(s)	125, 219, 378
DdeI	CTNAG	3 cut(s)	72, 197, 351
DpnI	GATC	2 cut(s)	77, 189
DpnII	GATC	2 cut(s)	75, 187
Eam1104I	CTCTTC	1 cut(s)	417
EarI	CTCTTC	1 cut(s)	417
Ecl136II	GAGCTC	1 cut(s)	262
Eco130I	CCWWGG	2 cut(s)	222, 249
Eco24I	GRGCYC	1 cut(s)	264
Eco47I	GGWCC	2 cut(s)	226, 290
Eco53kI	GAGCTC	1 cut(s)	262
Eco57I	CTGAAG	1 cut(s)	328
EcoICRI	GAGCTC	1 cut(s)	262
EcoT14I	CCWWGG	2 cut(s)	222, 249
EcoT38I	GRGCYC	1 cut(s)	264
ErhI	CCWWGG	2 cut(s)	222, 249
FaeI	CATG	6 cut(s)	38, 182, 253, 304, 384, 416
FaiI	YATR	9 cut(s)	36, 170, 180, 192, 251, 302, 317, 382, 414
FatI	CATG	6 cut(s)	34, 178, 249, 300, 380, 412
FauI	CCCGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	25
FriOI	GRGCYC	1 cut(s)	264
FspI	TGCGCA	1 cut(s)	431
GlaI	GCGC	1 cut(s)	431
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	59
HapII	CCGG	2 cut(s)	153, 332
HgaI	GACGC	1 cut(s)	248
HhaI	GCGC	1 cut(s)	432
Hin1I	GRCGYC	1 cut(s)	240
Hin1II	CATG	6 cut(s)	38, 182, 253, 304, 384, 416
Hin6I	GCGC	1 cut(s)	430
HinP1I	GCGC	1 cut(s)	430
HindIII	AAGCTT	2 cut(s)	161, 353
HinfI	GANTC	2 cut(s)	17, 307
HpaII	CCGG	2 cut(s)	153, 332
Hpy166II	GTNNAC	2 cut(s)	125, 127
Hpy188I	TCNGA	1 cut(s)	12
Hpy188III	TCNNGA	2 cut(s)	257, 346
Hpy8I	GTNNAC	2 cut(s)	125, 127
HpyCH4III	ACNGT	1 cut(s)	122
HpyCH4IV	ACGT	1 cut(s)	273
HpyCH4V	TGCA	2 cut(s)	384, 410
HpyF10VI	GCNNNNNNNGC	4 cut(s)	29, 38, 95, 320
HpyF3I	CTNAG	3 cut(s)	72, 197, 351
HpySE526I	ACGT	1 cut(s)	273
Hsp92I	GRCGYC	1 cut(s)	240
Hsp92II	CATG	6 cut(s)	38, 182, 253, 304, 384, 416
HspAI	GCGC	1 cut(s)	430
KpnI	GGTACC	1 cut(s)	222
Kzo9I	GATC	2 cut(s)	75, 187
LmnI	GCTCC	3 cut(s)	38, 101, 155
LweI	GCATC	1 cut(s)	76
MaeII	ACGT	1 cut(s)	273
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	2 cut(s)	77, 189
MboI	GATC	2 cut(s)	75, 187
MboII	GAAGA	1 cut(s)	434
MhlI	GDGCHC	1 cut(s)	264
MluCI	AATT	1 cut(s)	138
MlyI	GAGTC	1 cut(s)	26
MnlI	CCTC	5 cut(s)	192, 208, 297, 303, 334
MseI	TTAA	1 cut(s)	234
MspI	CCGG	2 cut(s)	153, 332
MwoI	GCNNNNNNNGC	4 cut(s)	29, 38, 95, 320
NcoI	CCATGG	1 cut(s)	249
NdeII	GATC	2 cut(s)	75, 187
NlaIII	CATG	6 cut(s)	38, 182, 253, 304, 384, 416
NlaIV	GGNNCC	4 cut(s)	58, 103, 220, 401
NmuCI	GTSAC	1 cut(s)	148
NsbI	TGCGCA	1 cut(s)	431
NspI	RCATGY	1 cut(s)	384
PfeI	GAWTC	1 cut(s)	307
PflMI	CCANNNNNTGG	1 cut(s)	35
PleI	GAGTC	1 cut(s)	25
PpsI	GAGTC	1 cut(s)	25
Psp124BI	GAGCTC	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	58, 103, 220, 401
PspPI	GGNCC	3 cut(s)	57, 226, 290
RsaI	GTAC	3 cut(s)	126, 220, 379
RsaNI	GTAC	3 cut(s)	125, 219, 378
SacI	GAGCTC	1 cut(s)	264
SaqAI	TTAA	1 cut(s)	234
Sau3AI	GATC	2 cut(s)	75, 187
Sau96I	GGNCC	3 cut(s)	57, 226, 290
SchI	GAGTC	1 cut(s)	26
SduI	GDGCHC	1 cut(s)	264
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	1 cut(s)	42
SinI	GGWCC	2 cut(s)	226, 290
SmlI	CTYRAG	1 cut(s)	212
SmoI	CTYRAG	1 cut(s)	212
Sse9I	AATT	1 cut(s)	138
SsiI	CCGC	1 cut(s)	26
SstI	GAGCTC	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	222, 249
TaaI	ACNGT	1 cut(s)	122
TaiI	ACGT	1 cut(s)	276
TasI	AATT	1 cut(s)	138
TatI	WGTACW	1 cut(s)	124
TfiI	GAWTC	1 cut(s)	307
Tru1I	TTAA	1 cut(s)	234
Tru9I	TTAA	1 cut(s)	234
TscAI	CASTG	2 cut(s)	85, 250
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspRI	CASTG	2 cut(s)	85, 250
Van91I	CCANNNNNTGG	1 cut(s)	35
VpaK11BI	GGWCC	2 cut(s)	226, 290
XapI	RAATTY	1 cut(s)	138
XceI	RCATGY	1 cut(s)	384
XcmI	CCANNNNNNNNNTGG	1 cut(s)	410

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.