Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001285

Physical Location & Seq

Genomic Coordinates Reverse (-)

2090692 .. 2093001

Gene Structure 2310 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G06770.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGGATGCTCGTAAGAGAGGACGCCCTGAAGCTGCTGCCTCTCACAACTCCAATGGCGGATTCAAGAGGTCTAAGCAAGAGATGGAATCAATTTCAACTGGTTTAGGAAGCAAATCCAAGCCATGCACTAAATTTTTCAGCACTTCTGGATGTCCATTTGGTGACAATTGCCACTTCTTGCACTATGTGCCCGGTGGGTACAATGCTGCAGCGCAGATGACAAATCTCCGACCACCGGTTTCTCAAGTTTCCAGAAATATGCAAGGATCTGGTGGTCCCGGCGGCAGATTCTCAGGGAGAGGAGATCCAGGATCAGGCCCTGTTTCAATCTTTGGTGCTTCTACTTCCAAGATCAGTGTAGATGCTTCTTTAGCCGGTGCCATCATTGGAAAAGGTGGAATCCATTCCAAACAGATATGCCGTGAAACAGGAGCAAAATTATCGATTAAAGATCATGAAAGAGACCCAAACTTGAAGATTATCGAGCTGGAAGGAACATTTGAACAGATCAATGTAGCGAGTGGGATGGTGAGAGAGCTTATAGGGAGGCTTGGATCAGTGAAGAAACCTCAAGGGATTGGTGGTCCTGAAGGGAAACCACATCCTGGGAGCAACTACAAAACCAAGATCTGTGATAGGTACTCTAAAGGGAACTGTACATATGGAGATAGATGCCATTTTGCTCATGGTGAATCTGAGCTGCGCAGGTCAGGAATCGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003700 GO:0003723 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048518 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051239 GO:0051240 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0097159 GO:0140110 GO:1900055 GO:1900057 GO:1901363 GO:1903506 GO:1905623 GO:2000024 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

240

Amino Acids

25.37

Weight (kDa)

9.66

Isoelectric Point (pI)

35.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
KH_1	PF00013	44 - 107	1.4e-12	KH domain
zf-CCCH	PF00642	134 - 159	1.6e-09	Zinc finger C-x8-C-x5-C-x3-H type (and similar)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G12130 AT3G12130 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770 AT5G06770
fragaria_vesca	FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_3g44210 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430 FvH4_6g22430
malus_domestica	MD00G1203400.v1.1 MD00G1203500.v1.1 MD03G1016300.v1.1 MD11G1017100.v1.1 MD12G1059600.v1.1 MD14G1058500.v1.1
prunus_persica	Prupe.6G014800_v2.0.a1 Prupe.6G014800_v2.0.a1 Prupe.7G076300_v2.0.a1 Prupe.7G076300_v2.0.a1
pyrus_communis	pycom03g01400 pycom11g01200 pycom12g05140 pycom14g04730
rosa_chinensis	RchiOBHm_Chr3g0479791 RchiOBHm_Chr5g0080561
rosa_laevigata	RLG00000023536 RLG00000036868
rosa_multiflora	Rmu_co8493965.1_g000001 Rmu_sc0000359.1_g000003 Rmu_sc0004329.1_g000008
rosa_roxburghii	Rroxscaffold_1G00002820 Rroxscaffold_6G00401970
rosa_rugosa	Rorug03G0178900 Rorug03G0179000 Rorug05G0470100 Rorug05G0470200
rosa_samantha	Rh3AG229200 Rh3BG262400 Rh3CG259200 Rh3DG255400 Rh5AG523600 Rh5BG545700 Rh5CG568900 Rh5DG555800
rosa_wichuraiana	Rw0G002260 Rw0G015290 Rw0G019210 Rw5G048590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	704
Acc36I	ACCTGC	1 cut(s)	696
AccB1I	GGYRCC	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	605
AciI	CCGC	2 cut(s)	57, 282
AclWI	GGATC	4 cut(s)	274, 299, 319, 562
AcsI	RAATTY	1 cut(s)	131
AcuI	CTGAAG	2 cut(s)	48, 609
AcyI	GRCGYC	1 cut(s)	22
AdeI	CACNNNGTG	1 cut(s)	187
AfaI	GTAC	3 cut(s)	200, 641, 658
AfiI	CCNNNNNNNGG	3 cut(s)	235, 314, 605
AgeI	ACCGGT	1 cut(s)	235
AgsI	TTSAA	5 cut(s)	64, 96, 327, 475, 503
AjnI	CCWGG	2 cut(s)	307, 604
AjuI	GAANNNNNNNTTGG	2 cut(s)	44, 76
AluBI	AGCT	4 cut(s)	32, 487, 538, 700
AluI	AGCT	4 cut(s)	32, 487, 538, 700
Alw26I	GTCTC	1 cut(s)	456
AlwI	GGATC	4 cut(s)	274, 299, 319, 562
AlwNI	CAGNNNCTG	1 cut(s)	320
AoxI	GGCC	1 cut(s)	316
ApeKI	GCWGC	5 cut(s)	32, 35, 206, 209, 700
ApoI	RAATTY	1 cut(s)	131
AsiGI	ACCGGT	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	403
AspLEI	GCGC	2 cut(s)	214, 705
AspS9I	GGNCC	3 cut(s)	275, 317, 584
AsuC2I	CCSGG	2 cut(s)	192, 279
AsuHPI	GGTGA	3 cut(s)	173, 541, 701
AvaII	GGWCC	2 cut(s)	275, 584
BaeGI	GKGCMC	1 cut(s)	192
BanI	GGYRCC	1 cut(s)	377
BbvI	GCAGC	5 cut(s)	19, 22, 193, 221, 687
BccI	CCATC	3 cut(s)	76, 389, 520
BceAI	ACGGC	1 cut(s)	405
BcgI	CGANNNNNNTGC	2 cut(s)	423, 457
BciT130I	CCWGG	2 cut(s)	309, 606
BcnI	CCSGG	2 cut(s)	192, 279
BcoDI	GTCTC	1 cut(s)	456
BfmI	CTRYAG	1 cut(s)	207
BfuAI	ACCTGC	1 cut(s)	696
BglII	AGATCT	1 cut(s)	627
BisI	GCNGC	6 cut(s)	33, 36, 207, 210, 283, 701
BlsI	GCNGC	6 cut(s)	34, 37, 208, 211, 284, 702
Bme1390I	CCNGG	4 cut(s)	192, 279, 309, 606
Bme18I	GGWCC	2 cut(s)	275, 584
BmgT120I	GGNCC	3 cut(s)	275, 317, 584
BmiI	GGNNCC	2 cut(s)	277, 379
BmrFI	CCNGG	4 cut(s)	192, 279, 309, 606
BmsI	GCATC	2 cut(s)	352, 662
BpuEI	CTTGAG	2 cut(s)	228, 555
BpuMI	CCSGG	2 cut(s)	192, 279
Bsa29I	ATCGAT	1 cut(s)	443
BsaHI	GRCGYC	1 cut(s)	22
BsaI	GGTCTC	1 cut(s)	456
BsaJI	CCNNGG	1 cut(s)	605
BsaWI	WCCGGW	1 cut(s)	235
Bsc4I	CCNNNNNNNGG	3 cut(s)	235, 314, 605
Bse118I	RCCGGY	2 cut(s)	235, 374
Bse1I	ACTGG	1 cut(s)	103
BseBI	CCWGG	2 cut(s)	309, 606
BseCI	ATCGAT	1 cut(s)	443
BseDI	CCNNGG	1 cut(s)	605
BseGI	GGATG	4 cut(s)	10, 155, 531, 601
BseLI	CCNNNNNNNGG	3 cut(s)	235, 314, 605
BseMII	CTCAG	2 cut(s)	306, 687
BseNI	ACTGG	1 cut(s)	103
BseRI	GAGGAG	1 cut(s)	315
BseSI	GKGCMC	1 cut(s)	192
BseXI	GCAGC	5 cut(s)	19, 22, 193, 221, 687
BshFI	GGCC	1 cut(s)	318
BshNI	GGYRCC	1 cut(s)	377
BshTI	ACCGGT	1 cut(s)	235
BshVI	ATCGAT	1 cut(s)	443
BsiSI	CCGG	4 cut(s)	192, 236, 279, 375
BslFI	GGGAC	1 cut(s)	261
BslI	CCNNNNNNNGG	3 cut(s)	235, 314, 605
BsmAI	GTCTC	1 cut(s)	456
BsmFI	GGGAC	1 cut(s)	261
BsnI	GGCC	1 cut(s)	318
Bso31I	GGTCTC	1 cut(s)	456
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp1407I	TGTACA	1 cut(s)	656
Bsp143I	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
BspACI	CCGC	2 cut(s)	57, 282
BspANI	GGCC	1 cut(s)	318
BspCNI	CTCAG	2 cut(s)	305, 688
BspDI	ATCGAT	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	454
BspLI	GGNNCC	2 cut(s)	277, 379
BspMAI	CTGCAG	1 cut(s)	211
BspMI	ACCTGC	1 cut(s)	696
BspPI	GGATC	4 cut(s)	274, 299, 319, 562
BspT107I	GGYRCC	1 cut(s)	377
BspTNI	GGTCTC	1 cut(s)	456
BsrFI	RCCGGY	2 cut(s)	235, 374
BsrGI	TGTACA	1 cut(s)	656
BsrI	ACTGG	1 cut(s)	103
BssAI	RCCGGY	2 cut(s)	235, 374
BssECI	CCNNGG	1 cut(s)	605
BssMI	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
BssNI	GRCGYC	1 cut(s)	22
Bst2UI	CCWGG	2 cut(s)	309, 606
Bst4CI	ACNGT	1 cut(s)	656
BstACI	GRCGYC	1 cut(s)	22
BstAPI	GCANNNNNTGC	1 cut(s)	187
BstAUI	TGTACA	1 cut(s)	656
BstDEI	CTNAG	4 cut(s)	72, 292, 696, 720
BstF5I	GGATG	4 cut(s)	10, 155, 531, 601
BstHHI	GCGC	2 cut(s)	214, 705
BstKTI	GATC	8 cut(s)	269, 307, 314, 354, 454, 510, 557, 630
BstMAI	GTCTC	1 cut(s)	456
BstMBI	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
BstMWI	GCNNNNNNNGC	2 cut(s)	187, 371
BstNI	CCWGG	2 cut(s)	309, 606
BstSCI	CCNGG	4 cut(s)	190, 277, 307, 604
BstSFI	CTRYAG	1 cut(s)	207
BstSLI	GKGCMC	1 cut(s)	192
BstV1I	GCAGC	5 cut(s)	19, 22, 193, 221, 687
BstX2I	RGATCY	3 cut(s)	266, 304, 627
BstYI	RGATCY	3 cut(s)	266, 304, 627
Bsu15I	ATCGAT	1 cut(s)	443
BsuRI	GGCC	1 cut(s)	318
BsuTUI	ATCGAT	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	10, 155, 531, 601
BtsIMutI	CAGTG	2 cut(s)	361, 564
BveI	ACCTGC	1 cut(s)	696
CaiI	CAGNNNCTG	1 cut(s)	320
CciI	TCATGA	1 cut(s)	454
CfoI	GCGC	2 cut(s)	214, 705
Cfr10I	RCCGGY	2 cut(s)	235, 374
Cfr13I	GGNCC	3 cut(s)	275, 317, 584
ClaI	ATCGAT	1 cut(s)	443
CseI	GACGC	1 cut(s)	30
Csp6I	GTAC	3 cut(s)	199, 640, 657
CspAI	ACCGGT	1 cut(s)	235
CviAII	CATG	3 cut(s)	123, 455, 686
CviJI	RGCY	8 cut(s)	32, 121, 318, 374, 487, 538, 550, 700
CviKI_1	RGCY	8 cut(s)	32, 121, 318, 374, 487, 538, 550, 700
CviQI	GTAC	3 cut(s)	199, 640, 657
DdeI	CTNAG	4 cut(s)	72, 292, 696, 720
DpnI	GATC	8 cut(s)	268, 306, 313, 353, 453, 509, 556, 629
DpnII	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
DraIII	CACNNNGTG	1 cut(s)	187
EciI	GGCGGA	1 cut(s)	72
Eco31I	GGTCTC	1 cut(s)	456
Eco47I	GGWCC	2 cut(s)	275, 584
Eco57I	CTGAAG	2 cut(s)	48, 609
EcoO109I	RGGNCCY	1 cut(s)	317
EcoRII	CCWGG	2 cut(s)	307, 604
FaeI	CATG	3 cut(s)	126, 458, 689
FaiI	YATR	9 cut(s)	124, 186, 260, 418, 456, 542, 661, 663, 687
FaqI	GGGAC	1 cut(s)	261
FatI	CATG	3 cut(s)	122, 454, 685
FauNDI	CATATG	1 cut(s)	661
Fnu4HI	GCNGC	6 cut(s)	33, 36, 207, 210, 283, 701
FokI	GGATG	4 cut(s)	17, 162, 538, 588
Fsp4HI	GCNGC	6 cut(s)	33, 36, 207, 210, 283, 701
FspI	TGCGCA	1 cut(s)	704
GlaI	GCGC	2 cut(s)	213, 704
GluI	GCNGC	6 cut(s)	33, 36, 207, 210, 283, 701
HaeIII	GGCC	1 cut(s)	318
HapII	CCGG	4 cut(s)	192, 236, 279, 375
HgaI	GACGC	1 cut(s)	30
HhaI	GCGC	2 cut(s)	214, 705
Hin1I	GRCGYC	1 cut(s)	22
Hin1II	CATG	3 cut(s)	126, 458, 689
Hin6I	GCGC	2 cut(s)	212, 703
HinP1I	GCGC	2 cut(s)	212, 703
HinfI	GANTC	6 cut(s)	60, 86, 288, 399, 692, 714
HpaII	CCGG	4 cut(s)	192, 236, 279, 375
HphI	GGTGA	3 cut(s)	173, 541, 701
Hpy188I	TCNGA	2 cut(s)	230, 697
Hpy188III	TCNNGA	6 cut(s)	64, 147, 252, 455, 587, 711
HpyAV	CCTTC	2 cut(s)	485, 584
HpyCH4III	ACNGT	1 cut(s)	656
HpyCH4V	TGCA	4 cut(s)	126, 181, 209, 262
HpyF10VI	GCNNNNNNNGC	2 cut(s)	187, 371
HpyF3I	CTNAG	4 cut(s)	72, 292, 696, 720
Hsp92I	GRCGYC	1 cut(s)	22
Hsp92II	CATG	3 cut(s)	126, 458, 689
HspAI	GCGC	2 cut(s)	212, 703
Kzo9I	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
LmnI	GCTCC	2 cut(s)	431, 609
Lsp1109I	GCAGC	5 cut(s)	19, 22, 193, 221, 687
LweI	GCATC	2 cut(s)	352, 662
MaeIII	GTNAC	1 cut(s)	161
MalI	GATC	8 cut(s)	268, 306, 313, 353, 453, 509, 556, 629
MboI	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
MboII	GAAGA	2 cut(s)	487, 574
MfeI	CAATTG	1 cut(s)	166
MflI	RGATCY	3 cut(s)	266, 304, 627
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	4 cut(s)	90, 131, 166, 437
MmeI	TCCRAC	1 cut(s)	253
MnlI	CCTC	6 cut(s)	11, 49, 60, 293, 540, 579
MroXI	GAANNNNTTC	1 cut(s)	403
MseI	TTAA	1 cut(s)	447
MspI	CCGG	4 cut(s)	192, 236, 279, 375
MspR9I	CCNGG	4 cut(s)	192, 279, 309, 606
MunI	CAATTG	1 cut(s)	166
MvaI	CCWGG	2 cut(s)	309, 606
MwoI	GCNNNNNNNGC	2 cut(s)	187, 371
NciI	CCSGG	2 cut(s)	192, 279
NdeI	CATATG	1 cut(s)	661
NdeII	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
NlaIII	CATG	3 cut(s)	126, 458, 689
NlaIV	GGNNCC	2 cut(s)	277, 379
NmuCI	GTSAC	1 cut(s)	161
NsbI	TGCGCA	1 cut(s)	704
PagI	TCATGA	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	403
PfeI	GAWTC	6 cut(s)	60, 86, 288, 399, 692, 714
PflMI	CCANNNNNTGG	1 cut(s)	605
PfoI	TCCNGGA	1 cut(s)	307
PinAI	ACCGGT	1 cut(s)	235
PkrI	GCNGC	6 cut(s)	34, 37, 208, 211, 284, 702
Psp6I	CCWGG	2 cut(s)	307, 604
PspGI	CCWGG	2 cut(s)	307, 604
PspN4I	GGNNCC	2 cut(s)	277, 379
PspPI	GGNCC	3 cut(s)	275, 317, 584
PstI	CTGCAG	1 cut(s)	211
PstNI	CAGNNNCTG	1 cut(s)	320
PsuI	RGATCY	3 cut(s)	266, 304, 627
RsaI	GTAC	3 cut(s)	200, 641, 658
RsaNI	GTAC	3 cut(s)	199, 640, 657
SaqAI	TTAA	1 cut(s)	447
SatI	GCNGC	6 cut(s)	33, 36, 207, 210, 283, 701
Sau3AI	GATC	8 cut(s)	266, 304, 311, 351, 451, 507, 554, 627
Sau96I	GGNCC	3 cut(s)	275, 317, 584
ScrFI	CCNGG	4 cut(s)	192, 279, 309, 606
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	9 cut(s)	34, 71, 397, 489, 540, 571, 641, 702, 710
SfaNI	GCATC	2 cut(s)	352, 662
SfcI	CTRYAG	1 cut(s)	207
SinI	GGWCC	2 cut(s)	275, 584
SmlI	CTYRAG	2 cut(s)	243, 570
SmoI	CTYRAG	2 cut(s)	243, 570
Sse9I	AATT	4 cut(s)	90, 131, 166, 437
SsiI	CCGC	2 cut(s)	57, 282
StyD4I	CCNGG	4 cut(s)	190, 277, 307, 604
TaaI	ACNGT	1 cut(s)	656
TaqI	TCGA	2 cut(s)	443, 483
TasI	AATT	4 cut(s)	90, 131, 166, 437
TatI	WGTACW	1 cut(s)	656
TauI	GCSGC	1 cut(s)	285
TfiI	GAWTC	6 cut(s)	60, 86, 288, 399, 692, 714
Tru1I	TTAA	1 cut(s)	447
Tru9I	TTAA	1 cut(s)	447
TscAI	CASTG	2 cut(s)	361, 564
TseFI	GTSAC	1 cut(s)	161
TseI	GCWGC	5 cut(s)	32, 35, 206, 209, 700
Tsp45I	GTSAC	1 cut(s)	161
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	2 cut(s)	361, 564
Van91I	CCANNNNNTGG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	275, 584
XapI	RAATTY	1 cut(s)	131
XcmI	CCANNNNNNNNNTGG	1 cut(s)	683
XmnI	GAANNNNTTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.