Rorug05G0470200

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0001285
Physical Location & Seq
Forward (+)
64681169 .. 64684897
3729 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0470200.1

Sequence Viewer

Length: 960 bp
ATGTCTCCAGGAGAACAGCATCTTGGAAAGATCGATCAAACTGTACTTGACCTGCGCGTCCATGTTGAGAAGGTAGTCTTTGAGCAGCAAACCGCTCTGTTAAAATCTGTAGAACAAAAGAAAGTTCTTAGGCAAGAGCTTGAGCAAAGTGATGCTCGAAAGAAAGAGCTTGAGAAACAACTTGTGGAGAATGAAACCCAAAAGAATGAGCTTCGGAAAGTTCTTGAGCAGAGACAAGCTCAAACGGAATATCTTGAGAAAGAACTAGACCACAGTGAAGCTAAAAAACAAGAGCTGAAAAGAGAGCTCCAGAAGTGTGAAGCTCAGAAAGAAGAGCTTAGCAAAGAACTTAAGCAGAAGGAGGCTCAGAATGAAGAGCTTAAGGAAGTACTCTTAGAGCAGAAAACAGCACTGTTAAAATATGAACAACAAATGAAGGATCGTAAGAAATTTCTTGAGCAAACTGAAGCTCAATGCAAAGATCTTAAGAAAGAAGTTGAGCAGCTACTTAACCTACGTGACCACTTTAAGGCAGTAGTCTTAGAGCAGCATGTAGACTTGTCAAAATCTGAAGCTAAAGTGAAGGATTTCATGGAAGAGCTTGAACACAGTGAAGCTCGAAACAAAGAGCTTAAGAAAGAACTAGAGGCAAATGAGCGGAAGAGGGAGCTCGAGCAGCAAGAGATGGAACTGCAAAAAATGAATGAGAGGGTTTCCCTGGTTAAAGAGACAGCTGATAAATTGTTGCCACTTTTGGTTGATAAATTGATGCCACTTTTGGCTGATAAATTGATGCCACTTTTGGCAGAAGACCTAATGCTATGCCATAAAGAAAAGGAAGACCTTCAACGGAAAAACAATGAATTGGAAAAAAAGCTTGAGCAGCAGGAAAAGAAACTGCAACAAATGCAAAGCGTTGATGAAGAAGATTCGAAGTTTGAAAGACGAGTTGGGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

319

Amino Acids

38.0

Weight (kDa)

5.54

Isoelectric Point (pI)

48.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 56
Acc36I ACCTGC 1 cut(s) 60
AccBSI CCGCTC 2 cut(s) 95, 658
AccI GTMKAC 1 cut(s) 555
AccII CGCG 1 cut(s) 57
AciI CCGC 2 cut(s) 93, 658
AclWI GGATC 1 cut(s) 447
AcsI RAATTY 1 cut(s) 449
AcuI CTGAAG 2 cut(s) 486, 591
AfaI GTAC 2 cut(s) 45, 390
AfiI CCNNNNNNNGG 1 cut(s) 529
AflII CTTAAG 4 cut(s) 350, 380, 485, 632
AgsI TTSAA 3 cut(s) 605, 848, 941
AjnI CCWGG 2 cut(s) 7, 717
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 933
Alw21I GWGCWC 2 cut(s) 309, 672
Alw26I GTCTC 3 cut(s) 9, 226, 722
AlwI GGATC 1 cut(s) 447
Ama87I CYCGRG 1 cut(s) 671
ApeKI GCWGC 5 cut(s) 85, 502, 547, 676, 883
ApoI RAATTY 1 cut(s) 449
Asp700I GAANNNNTTC 2 cut(s) 587, 843
AspLEI GCGC 1 cut(s) 57
AsuII TTCGAA 1 cut(s) 932
AvaI CYCGRG 1 cut(s) 671
BanII GRGCYC 2 cut(s) 309, 672
BbsI GAAGAC 2 cut(s) 816, 846
Bbv12I GWGCWC 2 cut(s) 309, 672
BbvI GCAGC 5 cut(s) 97, 514, 559, 688, 895
BccI CCATC 1 cut(s) 679
BciT130I CCWGG 2 cut(s) 9, 719
BcoDI GTCTC 3 cut(s) 9, 226, 722
BfaI CTAG 2 cut(s) 266, 644
BfmI CTRYAG 1 cut(s) 108
BfrI CTTAAG 4 cut(s) 350, 380, 485, 632
BfuAI ACCTGC 1 cut(s) 60
BglII AGATCT 1 cut(s) 481
BisI GCNGC 5 cut(s) 86, 503, 548, 677, 884
BlpI GCTNAGC 1 cut(s) 338
BlsI GCNGC 5 cut(s) 87, 504, 549, 678, 885
BmcAI AGTACT 1 cut(s) 390
Bme1390I CCNGG 2 cut(s) 9, 719
BmeT110I CYCGRG 1 cut(s) 671
BmrFI CCNGG 2 cut(s) 9, 719
BmsI GCATC 4 cut(s) 28, 142, 759, 783
BpiI GAAGAC 2 cut(s) 816, 846
BplI GAGNNNNNCTC 2 cut(s) 223, 255
BpmI CTGGAG 1 cut(s) 293
Bpu1102I GCTNAGC 1 cut(s) 338
Bpu14I TTCGAA 1 cut(s) 932
BpuEI CTTGAG 6 cut(s) 161, 191, 245, 275, 476, 899
Bsa29I ATCGAT 1 cut(s) 33
BsaAI YACGTR 1 cut(s) 518
BsaJI CCNNGG 1 cut(s) 717
Bsc4I CCNNNNNNNGG 1 cut(s) 529
BseBI CCWGG 2 cut(s) 9, 719
BseCI ATCGAT 1 cut(s) 33
BseDI CCNNGG 1 cut(s) 717
BseLI CCNNNNNNNGG 1 cut(s) 529
BseMII CTCAG 2 cut(s) 338, 380
BseXI GCAGC 5 cut(s) 97, 514, 559, 688, 895
Bsh1236I CGCG 1 cut(s) 57
BshVI ATCGAT 1 cut(s) 33
BsiHKAI GWGCWC 2 cut(s) 309, 672
BsiHKCI CYCGRG 1 cut(s) 671
BslI CCNNNNNNNGG 1 cut(s) 529
BsmAI GTCTC 3 cut(s) 9, 226, 722
BsoBI CYCGRG 1 cut(s) 671
Bsp119I TTCGAA 1 cut(s) 932
Bsp1286I GDGCHC 2 cut(s) 309, 672
Bsp143I GATC 4 cut(s) 30, 34, 439, 481
Bsp1720I GCTNAGC 1 cut(s) 338
BspACI CCGC 2 cut(s) 93, 658
BspCNI CTCAG 2 cut(s) 337, 379
BspDI ATCGAT 1 cut(s) 33
BspFNI CGCG 1 cut(s) 57
BspMI ACCTGC 1 cut(s) 60
BspPI GGATC 1 cut(s) 447
BspQI GCTCTTC 3 cut(s) 327, 369, 591
BspT104I TTCGAA 1 cut(s) 932
BspTI CTTAAG 4 cut(s) 350, 380, 485, 632
BsrBI CCGCTC 2 cut(s) 95, 658
BssECI CCNNGG 1 cut(s) 717
BssMI GATC 4 cut(s) 30, 34, 439, 481
Bst2UI CCWGG 2 cut(s) 9, 719
Bst4CI ACNGT 4 cut(s) 43, 275, 414, 611
Bst6I CTCTTC 4 cut(s) 327, 369, 591, 656
BstAFI CTTAAG 4 cut(s) 350, 380, 485, 632
BstAPI GCANNNNNTGC 1 cut(s) 907
BstBAI YACGTR 1 cut(s) 518
BstBI TTCGAA 1 cut(s) 932
BstDEI CTNAG 6 cut(s) 128, 324, 338, 366, 394, 541
BstFNI CGCG 1 cut(s) 57
BstHHI GCGC 1 cut(s) 57
BstKTI GATC 4 cut(s) 33, 37, 442, 484
BstMAI GTCTC 3 cut(s) 9, 226, 722
BstMBI GATC 4 cut(s) 30, 34, 439, 481
BstMWI GCNNNNNNNGC 3 cut(s) 676, 883, 907
BstNI CCWGG 2 cut(s) 9, 719
BstNSI RCATGY 1 cut(s) 554
BstSCI CCNGG 2 cut(s) 7, 717
BstSFI CTRYAG 1 cut(s) 108
BstUI CGCG 1 cut(s) 57
BstV1I GCAGC 5 cut(s) 97, 514, 559, 688, 895
BstV2I GAAGAC 2 cut(s) 816, 846
BstX2I RGATCY 1 cut(s) 481
BstYI RGATCY 1 cut(s) 481
Bsu15I ATCGAT 1 cut(s) 33
BsuTUI ATCGAT 1 cut(s) 33
BtsIMutI CAGTG 3 cut(s) 280, 410, 616
BveI ACCTGC 1 cut(s) 60
CfoI GCGC 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 33
CseI GACGC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 44, 389
CviAII CATG 3 cut(s) 62, 551, 592
CviQI GTAC 2 cut(s) 44, 389
DdeI CTNAG 6 cut(s) 128, 324, 338, 366, 394, 541
DpnI GATC 4 cut(s) 32, 36, 441, 483
DpnII GATC 4 cut(s) 30, 34, 439, 481
DrdI GACNNNNNNGTC 1 cut(s) 56
DseDI GACNNNNNNGTC 1 cut(s) 56
Eam1104I CTCTTC 4 cut(s) 327, 369, 591, 656
EarI CTCTTC 4 cut(s) 327, 369, 591, 656
Ecl136II GAGCTC 2 cut(s) 307, 670
Eco24I GRGCYC 2 cut(s) 309, 672
Eco53kI GAGCTC 2 cut(s) 307, 670
Eco57I CTGAAG 2 cut(s) 486, 591
Eco88I CYCGRG 1 cut(s) 671
EcoICRI GAGCTC 2 cut(s) 307, 670
EcoRII CCWGG 2 cut(s) 7, 717
EcoT38I GRGCYC 2 cut(s) 309, 672
FaeI CATG 3 cut(s) 65, 554, 595
FaiI YATR 6 cut(s) 63, 423, 552, 593, 823, 828
FalI AAGNNNNNCTT 4 cut(s) 62, 94, 321, 353
FatI CATG 3 cut(s) 61, 550, 591
FblI GTMKAC 1 cut(s) 555
Fnu4HI GCNGC 5 cut(s) 86, 503, 548, 677, 884
FriOI GRGCYC 2 cut(s) 309, 672
Fsp4HI GCNGC 5 cut(s) 86, 503, 548, 677, 884
FspBI CTAG 2 cut(s) 266, 644
GlaI GCGC 1 cut(s) 56
GluI GCNGC 5 cut(s) 86, 503, 548, 677, 884
GsuI CTGGAG 1 cut(s) 293
HgaI GACGC 1 cut(s) 46
HhaI GCGC 1 cut(s) 57
Hin1II CATG 3 cut(s) 65, 554, 595
Hin6I GCGC 1 cut(s) 55
HinP1I GCGC 1 cut(s) 55
HindIII AAGCTT 1 cut(s) 875
HinfI GANTC 1 cut(s) 929
Hpy166II GTNNAC 1 cut(s) 556
Hpy188I TCNGA 4 cut(s) 216, 327, 369, 571
Hpy188III TCNNGA 4 cut(s) 224, 254, 310, 455
Hpy8I GTNNAC 1 cut(s) 556
HpyAV CCTTC 5 cut(s) 64, 352, 430, 577, 854
HpyCH4III ACNGT 4 cut(s) 43, 275, 414, 611
HpyCH4IV ACGT 1 cut(s) 517
HpyCH4V TGCA 4 cut(s) 477, 694, 901, 910
HpyF10VI GCNNNNNNNGC 3 cut(s) 676, 883, 907
HpyF3I CTNAG 6 cut(s) 128, 324, 338, 366, 394, 541
HpySE526I ACGT 1 cut(s) 517
Hsp92II CATG 3 cut(s) 65, 554, 595
HspAI GCGC 1 cut(s) 55
Kzo9I GATC 4 cut(s) 30, 34, 439, 481
LguI GCTCTTC 3 cut(s) 327, 369, 591
LmnI GCTCC 2 cut(s) 312, 667
LpnPI CCDG 6 cut(s) 21, 65, 323, 704, 731, 872
Lsp1109I GCAGC 5 cut(s) 97, 514, 559, 688, 895
LweI GCATC 4 cut(s) 28, 142, 759, 783
MaeI CTAG 2 cut(s) 266, 644
MaeII ACGT 1 cut(s) 517
MaeIII GTNAC 1 cut(s) 518
MalI GATC 4 cut(s) 32, 36, 441, 483
MbiI CCGCTC 2 cut(s) 95, 658
MboI GATC 4 cut(s) 30, 34, 439, 481
MboII GAAGA 8 cut(s) 344, 386, 608, 673, 821, 851, 935, 938
MflI RGATCY 1 cut(s) 481
MhlI GDGCHC 2 cut(s) 309, 672
MluCI AATT 5 cut(s) 449, 740, 764, 788, 863
MnlI CCTC 4 cut(s) 355, 640, 657, 702
MroXI GAANNNNTTC 2 cut(s) 587, 843
MseI TTAA 9 cut(s) 101, 351, 381, 416, 486, 510, 528, 633, 723
MspA1I CMGCKG 1 cut(s) 734
MspCI CTTAAG 4 cut(s) 350, 380, 485, 632
MspR9I CCNGG 2 cut(s) 9, 719
MvaI CCWGG 2 cut(s) 9, 719
MvnI CGCG 1 cut(s) 57
MwoI GCNNNNNNNGC 3 cut(s) 676, 883, 907
NdeII GATC 4 cut(s) 30, 34, 439, 481
NlaIII CATG 3 cut(s) 65, 554, 595
NmuCI GTSAC 1 cut(s) 518
NspI RCATGY 1 cut(s) 554
NspV TTCGAA 1 cut(s) 932
PaeR7I CTCGAG 1 cut(s) 671
PciSI GCTCTTC 3 cut(s) 327, 369, 591
PdmI GAANNNNTTC 2 cut(s) 587, 843
PfeI GAWTC 1 cut(s) 929
PfoI TCCNGGA 1 cut(s) 7
PkrI GCNGC 5 cut(s) 87, 504, 549, 678, 885
Ppu21I YACGTR 1 cut(s) 518
Psp124BI GAGCTC 2 cut(s) 309, 672
Psp6I CCWGG 2 cut(s) 7, 717
PspGI CCWGG 2 cut(s) 7, 717
PspXI VCTCGAGB 1 cut(s) 671
PsuI RGATCY 1 cut(s) 481
PvuII CAGCTG 1 cut(s) 734
RsaI GTAC 2 cut(s) 45, 390
RsaNI GTAC 2 cut(s) 44, 389
SacI GAGCTC 2 cut(s) 309, 672
SapI GCTCTTC 3 cut(s) 327, 369, 591
SaqAI TTAA 9 cut(s) 101, 351, 381, 416, 486, 510, 528, 633, 723
SatI GCNGC 5 cut(s) 86, 503, 548, 677, 884
Sau3AI GATC 4 cut(s) 30, 34, 439, 481
ScaI AGTACT 1 cut(s) 390
ScrFI CCNGG 2 cut(s) 9, 719
SduI GDGCHC 2 cut(s) 309, 672
SfaNI GCATC 4 cut(s) 28, 142, 759, 783
SfcI CTRYAG 1 cut(s) 108
Sfr274I CTCGAG 1 cut(s) 671
SfuI TTCGAA 1 cut(s) 932
SlaI CTCGAG 1 cut(s) 671
Sse9I AATT 5 cut(s) 449, 740, 764, 788, 863
SsiI CCGC 2 cut(s) 93, 658
SspMI CTAG 2 cut(s) 266, 644
SstI GAGCTC 2 cut(s) 309, 672
StyD4I CCNGG 2 cut(s) 7, 717
TaaI ACNGT 4 cut(s) 43, 275, 414, 611
TaiI ACGT 1 cut(s) 520
TaqI TCGA 5 cut(s) 33, 157, 619, 672, 932
TasI AATT 5 cut(s) 449, 740, 764, 788, 863
TatI WGTACW 2 cut(s) 43, 388
TfiI GAWTC 1 cut(s) 929
Tru1I TTAA 9 cut(s) 101, 351, 381, 416, 486, 510, 528, 633, 723
Tru9I TTAA 9 cut(s) 101, 351, 381, 416, 486, 510, 528, 633, 723
TscAI CASTG 3 cut(s) 280, 417, 616
TseFI GTSAC 1 cut(s) 518
TseI GCWGC 5 cut(s) 85, 502, 547, 676, 883
Tsp45I GTSAC 1 cut(s) 518
TspDTI ATGAA 8 cut(s) 207, 387, 438, 449, 580, 716, 876, 936
TspGWI ACGGA 2 cut(s) 260, 865
TspRI CASTG 3 cut(s) 280, 417, 616
Vha464I CTTAAG 4 cut(s) 350, 380, 485, 632
XapI RAATTY 1 cut(s) 449
XceI RCATGY 1 cut(s) 554
XhoI CTCGAG 1 cut(s) 671
XmiI GTMKAC 1 cut(s) 555
XmnI GAANNNNTTC 2 cut(s) 587, 843
XspI CTAG 2 cut(s) 266, 644
ZrmI AGTACT 1 cut(s) 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.