Rroxscaffold_6G00401970

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000006
OG0001285
Physical Location & Seq
Forward (+)
24370549 .. 24373689
3141 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_6G00401970.1

Sequence Viewer

Length: 909 bp
ATGATGGATACTCGTAAACGAGGGAGGAATGAAGCTGGCGGCTTTCATGCTAATGGAGGCTTCAAGAAGAACAAGCAAGAACTGGACTCCTTATCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACCGCCGGCTGTCCTTTTGGTGAAAGTTGCCACTTCCTGCACTATGTTCCTGGTGGCTACAATGCTGTGGCTCAGGTGATGAATCTTGCACCTCCTCCTCAATCATCTAGAAACTTTGCAGGCCCACCATCCCATTCAAATGGTTCCAGTGCAGCTTCTGTTAAAACCCGCTTATGCAATAAATATAATTCTGCCGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCACATGGTGAGAGGGAACTTGGCAAGCCCGTTTCTCAGTCATATGGCCATGATGATCCCCGTGCCGTGGCACCTGCTTCAGGCCGTATGGGTAATTGGATGGAGCCAGGGCATGCACCCCTGCAAGGGCCGGCATCTAGTTTTGGTGCTTCATCTACTGCAAAGATCAGTGTAGATGCTTCACTTGCAGGAGCCATTATTGGGAAGGGTGGTGTAAATTCAAAGCACATTTGTCACCAGACAGGAGCCAAACTTGCAATTCGGGACCATGAGTCAGATCCCAATCTCAGGAACATTGAACTCGAGGGAACCTTTGAACAGATTCAGCAAGCTAGTGCCTTGGTGAGAGAGCTAATTCAGAGCGTCTTGATGTCTGGCCCTAACAAAACCCCTGGAAGAGGAGGCCCCGGAGCCCCCGCTCCTCCAGGAAGCAACTATAGGACAAAGCTATGCGATAATTTTGCAAAAGGGACTTGCACCTTTGGAGAAAGATGCCACTTTGCACATGGAGCTGCTGAATTGCGCAAGCCTGGAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

302

Amino Acids

31.75

Weight (kDa)

9.31

Isoelectric Point (pI)

45.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
KH_1 PF00013 176 - 240 5.6e-13 KH domain
zf-CCCH PF00642 269 - 293 9e-09 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 451
Acc16I TGCGCA 1 cut(s) 893
Acc36I ACCTGC 1 cut(s) 451
AccB1I GGYRCC 1 cut(s) 439
AccBSI CCGCTC 1 cut(s) 788
AciI CCGC 4 cut(s) 39, 144, 310, 786
AclWI GGATC 2 cut(s) 419, 641
AcoI YGGCCR 1 cut(s) 415
AcsI RAATTY 2 cut(s) 347, 586
AcuI CTGAAG 1 cut(s) 432
AdeI CACNNNGTG 1 cut(s) 377
AfiI CCNNNNNNNGG 7 cut(s) 436, 449, 494, 495, 570, 657, 767
AgsI TTSAA 5 cut(s) 64, 279, 591, 668, 686
AhdI GACNNNNNGTC 1 cut(s) 640
AjnI CCWGG 5 cut(s) 190, 475, 760, 793, 898
AluBI AGCT 6 cut(s) 35, 296, 701, 721, 817, 881
AluI AGCT 6 cut(s) 35, 296, 701, 721, 817, 881
AlwI GGATC 2 cut(s) 419, 641
AlwNI CAGNNNCTG 1 cut(s) 299
Ama87I CYCGRG 1 cut(s) 671
AoxI GGCC 6 cut(s) 262, 415, 451, 497, 745, 772
ApeKI GCWGC 3 cut(s) 293, 342, 881
ApoI RAATTY 2 cut(s) 347, 586
Asp700I GAANNNNTTC 1 cut(s) 690
AspLEI GCGC 1 cut(s) 894
AspS9I GGNCC 5 cut(s) 263, 497, 634, 746, 773
AsuC2I CCSGG 1 cut(s) 777
AsuHPI GGTGA 6 cut(s) 173, 229, 365, 389, 596, 724
AvaI CYCGRG 1 cut(s) 671
AvaII GGWCC 1 cut(s) 634
BalI TGGCCA 1 cut(s) 417
BanI GGYRCC 1 cut(s) 439
BanII GRGCYC 1 cut(s) 784
BbvI GCAGC 3 cut(s) 305, 329, 868
BccI CCATC 2 cut(s) 277, 463
BceAI ACGGC 2 cut(s) 419, 438
BcgI CGANNNNNNTGC 2 cut(s) 812, 846
BciT130I CCWGG 5 cut(s) 192, 477, 762, 795, 900
BcnI CCSGG 1 cut(s) 777
BfaI CTAG 3 cut(s) 249, 507, 702
BfmI CTRYAG 1 cut(s) 805
BfuAI ACCTGC 1 cut(s) 451
BisI GCNGC 4 cut(s) 40, 294, 343, 882
BlsI GCNGC 4 cut(s) 41, 295, 344, 883
Bme1390I CCNGG 6 cut(s) 192, 477, 762, 777, 795, 900
Bme18I GGWCC 1 cut(s) 634
BmeRI GACNNNNNGTC 1 cut(s) 640
BmeT110I CYCGRG 1 cut(s) 671
BmgT120I GGNCC 5 cut(s) 263, 497, 634, 746, 773
BmiI GGNNCC 9 cut(s) 286, 441, 474, 562, 616, 635, 679, 775, 781
BmrFI CCNGG 6 cut(s) 192, 477, 762, 777, 795, 900
BmsI GCATC 3 cut(s) 512, 535, 851
BpmI CTGGAG 1 cut(s) 777
Bpu10I CCTNAGC 1 cut(s) 213
BpuMI CCSGG 1 cut(s) 777
BsaBI GATNNNNATC 1 cut(s) 651
BsaJI CCNNGG 5 cut(s) 435, 476, 708, 760, 775
Bsc4I CCNNNNNNNGG 7 cut(s) 436, 449, 494, 495, 570, 657, 767
Bse118I RCCGGY 2 cut(s) 146, 499
Bse1I ACTGG 3 cut(s) 87, 103, 288
Bse8I GATNNNNATC 1 cut(s) 651
BseBI CCWGG 5 cut(s) 192, 477, 762, 795, 900
BseDI CCNNGG 5 cut(s) 435, 476, 708, 760, 775
BseGI GGATG 2 cut(s) 269, 474
BseJI GATNNNNATC 1 cut(s) 651
BseLI CCNNNNNNNGG 7 cut(s) 436, 449, 494, 495, 570, 657, 767
BseMII CTCAG 3 cut(s) 227, 419, 670
BseNI ACTGG 3 cut(s) 87, 103, 288
BseRI GAGGAG 4 cut(s) 225, 228, 780, 783
BseXI GCAGC 3 cut(s) 305, 329, 868
BsgI GTGCAG 2 cut(s) 164, 312
BshFI GGCC 6 cut(s) 264, 417, 453, 499, 747, 774
BshNI GGYRCC 1 cut(s) 439
BsiHKCI CYCGRG 1 cut(s) 671
BsiSI CCGG 3 cut(s) 147, 500, 777
BslFI GGGAC 2 cut(s) 647, 853
BslI CCNNNNNNNGG 7 cut(s) 436, 449, 494, 495, 570, 657, 767
BsmFI GGGAC 2 cut(s) 647, 853
BsnI GGCC 6 cut(s) 264, 417, 453, 499, 747, 774
BsoBI CYCGRG 1 cut(s) 671
Bsp1286I GDGCHC 1 cut(s) 784
Bsp143I GATC 3 cut(s) 424, 534, 646
BspACI CCGC 4 cut(s) 39, 144, 310, 786
BspANI GGCC 6 cut(s) 264, 417, 453, 499, 747, 774
BspCNI CTCAG 3 cut(s) 226, 418, 669
BspLI GGNNCC 9 cut(s) 286, 441, 474, 562, 616, 635, 679, 775, 781
BspMI ACCTGC 1 cut(s) 451
BspPI GGATC 2 cut(s) 419, 641
BspT107I GGYRCC 1 cut(s) 439
BsrBI CCGCTC 1 cut(s) 788
BsrFI RCCGGY 2 cut(s) 146, 499
BsrI ACTGG 3 cut(s) 87, 103, 288
BssAI RCCGGY 2 cut(s) 146, 499
BssECI CCNNGG 5 cut(s) 435, 476, 708, 760, 775
BssMI GATC 3 cut(s) 424, 534, 646
BssT1I CCWWGG 1 cut(s) 708
Bst2UI CCWGG 5 cut(s) 192, 477, 762, 795, 900
Bst6I CTCTTC 1 cut(s) 760
BstC8I GCNNGC 8 cut(s) 37, 148, 262, 395, 483, 501, 699, 896
BstDEI CTNAG 3 cut(s) 213, 405, 656
BstDSI CCRYGG 1 cut(s) 435
BstENI CCTNNNNNAGG 2 cut(s) 447, 765
BstF5I GGATG 2 cut(s) 269, 474
BstHHI GCGC 1 cut(s) 894
BstKTI GATC 3 cut(s) 427, 537, 649
BstMBI GATC 3 cut(s) 424, 534, 646
BstMWI GCNNNNNNNGC 4 cut(s) 147, 554, 623, 878
BstNI CCWGG 5 cut(s) 192, 477, 762, 795, 900
BstNSI RCATGY 1 cut(s) 485
BstSCI CCNGG 6 cut(s) 190, 475, 760, 775, 793, 898
BstSFI CTRYAG 1 cut(s) 805
BstV1I GCAGC 3 cut(s) 305, 329, 868
BstX2I RGATCY 1 cut(s) 646
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 646
BsuRI GGCC 6 cut(s) 264, 417, 453, 499, 747, 774
BtgI CCRYGG 1 cut(s) 435
BtsCI GGATG 2 cut(s) 269, 474
BtsIMutI CAGTG 2 cut(s) 295, 544
BveI ACCTGC 1 cut(s) 451
Cac8I GCNNGC 8 cut(s) 37, 148, 262, 395, 483, 501, 699, 896
CaiI CAGNNNCTG 1 cut(s) 299
CfoI GCGC 1 cut(s) 894
Cfr10I RCCGGY 2 cut(s) 146, 499
Cfr13I GGNCC 5 cut(s) 263, 497, 634, 746, 773
CseI GACGC 1 cut(s) 721
CviAII CATG 7 cut(s) 47, 123, 374, 419, 482, 638, 875
DdeI CTNAG 3 cut(s) 213, 405, 656
DpnI GATC 3 cut(s) 426, 536, 648
DpnII GATC 3 cut(s) 424, 534, 646
DraIII CACNNNGTG 1 cut(s) 377
DriI GACNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 1 cut(s) 415
Eam1104I CTCTTC 1 cut(s) 760
Eam1105I GACNNNNNGTC 1 cut(s) 640
EarI CTCTTC 1 cut(s) 760
Eco130I CCWWGG 1 cut(s) 708
Eco24I GRGCYC 1 cut(s) 784
Eco47I GGWCC 1 cut(s) 634
Eco57I CTGAAG 1 cut(s) 432
Eco88I CYCGRG 1 cut(s) 671
EcoNI CCTNNNNNAGG 2 cut(s) 447, 765
EcoO109I RGGNCCY 1 cut(s) 773
EcoRII CCWGG 5 cut(s) 190, 475, 760, 793, 898
EcoT14I CCWWGG 1 cut(s) 708
EcoT38I GRGCYC 1 cut(s) 784
ErhI CCWWGG 1 cut(s) 708
FaeI CATG 7 cut(s) 50, 126, 377, 422, 485, 641, 878
FaqI GGGAC 2 cut(s) 647, 853
FatI CATG 7 cut(s) 46, 122, 373, 418, 481, 637, 874
FauI CCCGC 2 cut(s) 317, 793
FauNDI CATATG 1 cut(s) 412
Fnu4HI GCNGC 4 cut(s) 40, 294, 343, 882
FokI GGATG 2 cut(s) 256, 481
FriOI GRGCYC 1 cut(s) 784
Fsp4HI GCNGC 4 cut(s) 40, 294, 343, 882
FspBI CTAG 3 cut(s) 249, 507, 702
FspI TGCGCA 1 cut(s) 893
GlaI GCGC 1 cut(s) 893
GluI GCNGC 4 cut(s) 40, 294, 343, 882
GsuI CTGGAG 1 cut(s) 777
HaeIII GGCC 6 cut(s) 264, 417, 453, 499, 747, 774
HapII CCGG 3 cut(s) 147, 500, 777
HgaI GACGC 1 cut(s) 721
HhaI GCGC 1 cut(s) 894
Hin1II CATG 7 cut(s) 50, 126, 377, 422, 485, 641, 878
Hin6I GCGC 1 cut(s) 892
HinP1I GCGC 1 cut(s) 892
HinfI GANTC 4 cut(s) 86, 223, 641, 691
HpaII CCGG 3 cut(s) 147, 500, 777
HphI GGTGA 6 cut(s) 173, 229, 365, 389, 596, 724
Hpy166II GTNNAC 1 cut(s) 17
Hpy188I TCNGA 2 cut(s) 646, 729
Hpy188III TCNNGA 5 cut(s) 64, 249, 632, 658, 736
Hpy8I GTNNAC 1 cut(s) 17
HpyAV CCTTC 2 cut(s) 332, 568
HpyF10VI GCNNNNNNNGC 4 cut(s) 147, 554, 623, 878
HpyF3I CTNAG 3 cut(s) 213, 405, 656
Hsp92II CATG 7 cut(s) 50, 126, 377, 422, 485, 641, 878
HspAI GCGC 1 cut(s) 892
KroI GCCGGC 2 cut(s) 146, 499
KroNI GCCGGC 2 cut(s) 148, 501
Kzo9I GATC 3 cut(s) 424, 534, 646
LmnI GCTCC 6 cut(s) 472, 560, 614, 779, 793, 878
Lsp1109I GCAGC 3 cut(s) 305, 329, 868
LweI GCATC 3 cut(s) 512, 535, 851
MaeI CTAG 3 cut(s) 249, 507, 702
MaeIII GTNAC 2 cut(s) 353, 602
MalI GATC 3 cut(s) 426, 536, 648
MbiI CCGCTC 1 cut(s) 788
MboI GATC 3 cut(s) 424, 534, 646
MboII GAAGA 2 cut(s) 79, 777
MflI RGATCY 1 cut(s) 646
MhlI GDGCHC 1 cut(s) 784
MlsI TGGCCA 1 cut(s) 417
MluCI AATT 8 cut(s) 328, 347, 463, 586, 627, 723, 826, 887
MluNI TGGCCA 1 cut(s) 417
MlyI GAGTC 2 cut(s) 80, 650
Mox20I TGGCCA 1 cut(s) 417
MroNI GCCGGC 2 cut(s) 146, 499
MroXI GAANNNNTTC 1 cut(s) 690
MscI TGGCCA 1 cut(s) 417
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 2 cut(s) 51, 279
Msp20I TGGCCA 1 cut(s) 417
MspI CCGG 3 cut(s) 147, 500, 777
MspR9I CCNGG 6 cut(s) 192, 477, 762, 777, 795, 900
MvaI CCWGG 5 cut(s) 192, 477, 762, 795, 900
MwoI GCNNNNNNNGC 4 cut(s) 147, 554, 623, 878
NaeI GCCGGC 2 cut(s) 148, 501
NciI CCSGG 1 cut(s) 777
NdeI CATATG 1 cut(s) 412
NdeII GATC 3 cut(s) 424, 534, 646
NgoMIV GCCGGC 2 cut(s) 146, 499
NlaIII CATG 7 cut(s) 50, 126, 377, 422, 485, 641, 878
NlaIV GGNNCC 9 cut(s) 286, 441, 474, 562, 616, 635, 679, 775, 781
NmuCI GTSAC 2 cut(s) 353, 602
NsbI TGCGCA 1 cut(s) 893
NspI RCATGY 1 cut(s) 485
PaeI GCATGC 1 cut(s) 485
PaeR7I CTCGAG 1 cut(s) 671
PaqCI CACCTGC 1 cut(s) 451
PdiI GCCGGC 2 cut(s) 148, 501
PdmI GAANNNNTTC 1 cut(s) 690
PfeI GAWTC 2 cut(s) 223, 691
PfoI TCCNGGA 1 cut(s) 793
PkrI GCNGC 4 cut(s) 41, 295, 344, 883
PleI GAGTC 2 cut(s) 80, 649
PpsI GAGTC 2 cut(s) 80, 649
Psp6I CCWGG 5 cut(s) 190, 475, 760, 793, 898
PspGI CCWGG 5 cut(s) 190, 475, 760, 793, 898
PspN4I GGNNCC 9 cut(s) 286, 441, 474, 562, 616, 635, 679, 775, 781
PspPI GGNCC 5 cut(s) 263, 497, 634, 746, 773
PspXI VCTCGAGB 1 cut(s) 671
PstNI CAGNNNCTG 1 cut(s) 299
PsuI RGATCY 1 cut(s) 646
RseI CAYNNNNRTG 2 cut(s) 51, 279
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 4 cut(s) 40, 294, 343, 882
Sau3AI GATC 3 cut(s) 424, 534, 646
Sau96I GGNCC 5 cut(s) 263, 497, 634, 746, 773
SchI GAGTC 2 cut(s) 80, 650
ScrFI CCNGG 6 cut(s) 192, 477, 762, 777, 795, 900
SduI GDGCHC 1 cut(s) 784
SfaNI GCATC 3 cut(s) 512, 535, 851
SfcI CTRYAG 1 cut(s) 805
Sfr274I CTCGAG 1 cut(s) 671
SinI GGWCC 1 cut(s) 634
SlaI CTCGAG 1 cut(s) 671
SmiMI CAYNNNNRTG 2 cut(s) 51, 279
SmlI CTYRAG 1 cut(s) 671
SmoI CTYRAG 1 cut(s) 671
SphI GCATGC 1 cut(s) 485
Sse9I AATT 8 cut(s) 328, 347, 463, 586, 627, 723, 826, 887
SsiI CCGC 4 cut(s) 39, 144, 310, 786
SspMI CTAG 3 cut(s) 249, 507, 702
StyD4I CCNGG 6 cut(s) 190, 475, 760, 775, 793, 898
StyI CCWWGG 1 cut(s) 708
TaqI TCGA 2 cut(s) 116, 672
TasI AATT 8 cut(s) 328, 347, 463, 586, 627, 723, 826, 887
TauI GCSGC 1 cut(s) 42
TfiI GAWTC 2 cut(s) 223, 691
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 2 cut(s) 295, 544
TseFI GTSAC 2 cut(s) 353, 602
TseI GCWGC 3 cut(s) 293, 342, 881
Tsp45I GTSAC 2 cut(s) 353, 602
TspDTI ATGAA 4 cut(s) 35, 45, 236, 510
TspRI CASTG 2 cut(s) 295, 544
VpaK11BI GGWCC 1 cut(s) 634
XagI CCTNNNNNAGG 2 cut(s) 447, 765
XapI RAATTY 2 cut(s) 347, 586
XbaI TCTAGA 1 cut(s) 248
XceI RCATGY 1 cut(s) 485
XcmI CCANNNNNNNNNTGG 2 cut(s) 371, 872
XhoI CTCGAG 1 cut(s) 671
XmnI GAANNNNTTC 1 cut(s) 690
XspI CTAG 3 cut(s) 249, 507, 702
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.