FvH4_3g44210

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0001285
Physical Location & Seq
Forward (+)
36841590 .. 36846024
4435 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g44210.t4

Sequence Viewer

Length: 903 bp
ATGGACTTCGGCGGCGGTCGCAAGCGAGGAAGGCCCGAAGCGGCGTCGTTTAACGGCAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTTCAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACTTCTGGTTGCCCTTTTGGAGAGGGATGTCACTTCTTGCATTATGTTCCTGGTGGCGTCAAAGCTGTTTCTCAGATGACTGGTAGTAACCCAACTCATCCACCTCCTCCCAGACATTCAGCAGCCCCTCCATCATTTCCAGATGGTTCTTCTCCTCCAGCTGTCAAGACACGGTTATGCAACAAATACAACACAGCTGAAGGTTGCAAGTTTGGAGATAAGTGTCATTTTGCCCACGGTGAATATGAACTTGGGAGGCCCACTGCTCAATCTTATGATGATCCTCGTGGTGGGGGAGCAATGCATGGAAGGATGGGAGGTCGGAATGAGCCTCCCCCACCAAGTCATGGAGCAGGTAGATTTGGGGCCATTGCCAATGCTAAGATTAGTGTAGATGCTTCACTTGCTGGAGCCATAATTGGAAAAAATGGTCTGAACTCAAAGCAAATTTGTCGTGTGACTGGAGCAAAGCTTTCTATTAGAGAGCACGAGTCAGATCCGAAGCTGAGGAACATTGAGCTTGAGGGCACTTTTGATCAGATTAAAGATGCCAGTGCCATGGTTCAAGATATTATTTTGAATGTGAGCTCAGCTGCTGGGCCGCCGCACATGAGGAATCCTGCTATGGGGGCTTCTATAGGAAGTAGTAACTTCAAGACTAAGCTTTGCGAGAACTTTACCAAAGGTCAATGCACATTCGGTGACAGGTGCCACTTTGCACATGGAGCTGAAGAGTTGCGCCGGGGAGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

301

Amino Acids

31.68

Weight (kDa)

9.31

Isoelectric Point (pI)

40.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 31 - 56 1.6e-06 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
KH_1 PF00013 103 - 165 2.3e-12 KH domain
zf-CCCH PF00642 193 - 217 1.8e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
zf-CCCH_4 PF18044 196 - 216 1.1e-06 CCCH-type zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 491
AccB1I GGYRCC 1 cut(s) 855
AccB7I CCANNNNNTGG 1 cut(s) 494
AciI CCGC 6 cut(s) 12, 15, 41, 63, 749, 752
AclWI GGATC 2 cut(s) 422, 638
AcsI RAATTY 1 cut(s) 594
AcuI CTGAAG 2 cut(s) 366, 897
AcyI GRCGYC 2 cut(s) 44, 204
AfiI CCNNNNNNNGG 3 cut(s) 437, 494, 773
AgsI TTSAA 5 cut(s) 70, 102, 713, 727, 802
AjnI CCWGG 1 cut(s) 196
AjuI GAANNNNNNNTTGG 2 cut(s) 381, 413
Alw21I GWGCWC 2 cut(s) 636, 737
AlwI GGATC 2 cut(s) 422, 638
AlwNI CAGNNNCTG 1 cut(s) 743
AoxI GGCC 4 cut(s) 32, 404, 513, 746
ApeKI GCWGC 2 cut(s) 269, 740
ApoI RAATTY 1 cut(s) 594
AspLEI GCGC 1 cut(s) 888
AspS9I GGNCC 4 cut(s) 33, 405, 513, 746
AsuC2I CCSGG 1 cut(s) 890
AsuHPI GGTGA 2 cut(s) 398, 860
BaeGI GKGCMC 1 cut(s) 677
BanI GGYRCC 1 cut(s) 855
BanII GRGCYC 1 cut(s) 737
BauI CACGAG 2 cut(s) 432, 635
Bbv12I GWGCWC 2 cut(s) 636, 737
BbvCI CCTCAGC 1 cut(s) 653
BbvI GCAGC 2 cut(s) 281, 727
BccI CCATC 3 cut(s) 284, 286, 454
BceAI ACGGC 1 cut(s) 70
BcgI CGANNNNNNTGC 2 cut(s) 581, 615
BciT130I CCWGG 1 cut(s) 198
BclI TGATCA 1 cut(s) 682
BcnI CCSGG 1 cut(s) 890
BfmI CTRYAG 1 cut(s) 783
BfuAI ACCTGC 1 cut(s) 491
BisI GCNGC 7 cut(s) 13, 42, 64, 270, 741, 749, 752
BlpI GCTNAGC 1 cut(s) 736
BlsI GCNGC 7 cut(s) 14, 43, 65, 271, 742, 750, 753
Bme1390I CCNGG 2 cut(s) 198, 890
BmgT120I GGNCC 4 cut(s) 33, 405, 513, 746
BmiI GGNNCC 3 cut(s) 514, 559, 857
BmrFI CCNGG 2 cut(s) 198, 890
BmsI GCATC 2 cut(s) 532, 685
BpmI CTGGAG 3 cut(s) 288, 576, 630
Bpu10I CCTNAGC 1 cut(s) 653
Bpu1102I GCTNAGC 1 cut(s) 736
BpuEI CTTGAG 1 cut(s) 689
BpuMI CCSGG 1 cut(s) 890
BsaHI GRCGYC 2 cut(s) 44, 204
BsaJI CCNNGG 3 cut(s) 382, 705, 889
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 494, 773
Bse1I ACTGG 4 cut(s) 109, 232, 613, 699
Bse3DI GCAATG 3 cut(s) 64, 453, 516
BseBI CCWGG 1 cut(s) 198
BseDI CCNNGG 3 cut(s) 382, 705, 889
BseGI GGATG 4 cut(s) 179, 244, 465, 903
BseLI CCNNNNNNNGG 3 cut(s) 437, 494, 773
BseMI GCAATG 3 cut(s) 64, 453, 516
BseMII CTCAG 3 cut(s) 233, 644, 750
BseNI ACTGG 4 cut(s) 109, 232, 613, 699
BseRI GAGGAG 2 cut(s) 243, 291
BseSI GKGCMC 1 cut(s) 677
BseXI GCAGC 2 cut(s) 281, 727
BseYI CCCAGC 1 cut(s) 743
Bsh1285I CGRYCG 1 cut(s) 19
BshFI GGCC 4 cut(s) 34, 406, 515, 748
BshNI GGYRCC 1 cut(s) 855
BsiEI CGRYCG 1 cut(s) 19
BsiHKAI GWGCWC 2 cut(s) 636, 737
BsiSI CCGG 1 cut(s) 889
BslI CCNNNNNNNGG 3 cut(s) 437, 494, 773
BsnI GGCC 4 cut(s) 34, 406, 515, 748
Bsp1286I GDGCHC 3 cut(s) 636, 677, 737
Bsp143I GATC 3 cut(s) 427, 643, 682
Bsp1720I GCTNAGC 1 cut(s) 736
Bsp19I CCATGG 1 cut(s) 705
BspACI CCGC 6 cut(s) 12, 15, 41, 63, 749, 752
BspANI GGCC 4 cut(s) 34, 406, 515, 748
BspCNI CTCAG 3 cut(s) 232, 645, 749
BspLI GGNNCC 3 cut(s) 514, 559, 857
BspMI ACCTGC 1 cut(s) 491
BspPI GGATC 2 cut(s) 422, 638
BspT107I GGYRCC 1 cut(s) 855
BsrDI GCAATG 3 cut(s) 64, 453, 516
BsrI ACTGG 4 cut(s) 109, 232, 613, 699
BssECI CCNNGG 3 cut(s) 382, 705, 889
BssMI GATC 3 cut(s) 427, 643, 682
BssNI GRCGYC 2 cut(s) 44, 204
BssSI CACGAG 2 cut(s) 432, 635
BssT1I CCWWGG 1 cut(s) 705
Bst2BI CACGAG 2 cut(s) 432, 635
Bst2UI CCWGG 1 cut(s) 198
Bst4CI ACNGT 2 cut(s) 321, 386
Bst6I CTCTTC 1 cut(s) 873
BstACI GRCGYC 2 cut(s) 44, 204
BstC8I GCNNGC 1 cut(s) 23
BstDEI CTNAG 5 cut(s) 219, 528, 653, 736, 807
BstDSI CCRYGG 2 cut(s) 382, 705
BstF5I GGATG 4 cut(s) 179, 244, 465, 903
BstHHI GCGC 1 cut(s) 888
BstKTI GATC 3 cut(s) 430, 646, 685
BstMBI GATC 3 cut(s) 427, 643, 682
BstMCI CGRYCG 1 cut(s) 19
BstMWI GCNNNNNNNGC 6 cut(s) 18, 31, 63, 551, 776, 872
BstNI CCWGG 1 cut(s) 198
BstSCI CCNGG 2 cut(s) 196, 888
BstSFI CTRYAG 1 cut(s) 783
BstSLI GKGCMC 1 cut(s) 677
BstV1I GCAGC 2 cut(s) 281, 727
BstX2I RGATCY 1 cut(s) 643
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 1 cut(s) 643
BsuRI GGCC 4 cut(s) 34, 406, 515, 748
BtgI CCRYGG 2 cut(s) 382, 705
BtsCI GGATG 4 cut(s) 179, 244, 465, 903
BtsI GCAGTG 1 cut(s) 408
BtsIMutI CAGTG 2 cut(s) 408, 706
BveI ACCTGC 1 cut(s) 491
Cac8I GCNNGC 1 cut(s) 23
CaiI CAGNNNCTG 1 cut(s) 743
CfoI GCGC 1 cut(s) 888
Cfr13I GGNCC 4 cut(s) 33, 405, 513, 746
CseI GACGC 2 cut(s) 33, 193
CviAII CATG 6 cut(s) 129, 452, 494, 706, 757, 869
DdeI CTNAG 5 cut(s) 219, 528, 653, 736, 807
DpnI GATC 3 cut(s) 429, 645, 684
DpnII GATC 3 cut(s) 427, 643, 682
Eam1104I CTCTTC 1 cut(s) 873
EarI CTCTTC 1 cut(s) 873
Ecl136II GAGCTC 1 cut(s) 735
Eco130I CCWWGG 1 cut(s) 705
Eco24I GRGCYC 1 cut(s) 737
Eco53kI GAGCTC 1 cut(s) 735
Eco57I CTGAAG 2 cut(s) 366, 897
EcoICRI GAGCTC 1 cut(s) 735
EcoRII CCWGG 1 cut(s) 196
EcoT14I CCWWGG 1 cut(s) 705
EcoT22I ATGCAT 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 737
ErhI CCWWGG 1 cut(s) 705
FaeI CATG 6 cut(s) 132, 455, 497, 709, 760, 872
FatI CATG 6 cut(s) 128, 451, 493, 705, 756, 868
FbaI TGATCA 1 cut(s) 682
Fnu4HI GCNGC 7 cut(s) 13, 42, 64, 270, 741, 749, 752
FokI GGATG 3 cut(s) 186, 231, 472
FriOI GRGCYC 1 cut(s) 737
Fsp4HI GCNGC 7 cut(s) 13, 42, 64, 270, 741, 749, 752
GlaI GCGC 1 cut(s) 887
GluI GCNGC 7 cut(s) 13, 42, 64, 270, 741, 749, 752
GsaI CCCAGC 1 cut(s) 747
GsuI CTGGAG 3 cut(s) 288, 576, 630
HaeIII GGCC 4 cut(s) 34, 406, 515, 748
HapII CCGG 1 cut(s) 889
HgaI GACGC 2 cut(s) 33, 193
HhaI GCGC 1 cut(s) 888
Hin1I GRCGYC 2 cut(s) 44, 204
Hin1II CATG 6 cut(s) 132, 455, 497, 709, 760, 872
Hin6I GCGC 1 cut(s) 886
HinP1I GCGC 1 cut(s) 886
HindIII AAGCTT 2 cut(s) 617, 809
HinfI GANTC 3 cut(s) 92, 638, 763
HpaII CCGG 1 cut(s) 889
HphI GGTGA 2 cut(s) 398, 860
Hpy188I TCNGA 6 cut(s) 222, 471, 582, 643, 648, 687
Hpy188III TCNNGA 5 cut(s) 70, 287, 313, 713, 802
Hpy99I CGWCG 1 cut(s) 49
HpyAV CCTTC 3 cut(s) 24, 341, 450
HpyCH4III ACNGT 2 cut(s) 321, 386
HpyCH4V TGCA 7 cut(s) 132, 187, 327, 354, 451, 840, 866
HpyF10VI GCNNNNNNNGC 6 cut(s) 18, 31, 63, 551, 776, 872
HpyF3I CTNAG 5 cut(s) 219, 528, 653, 736, 807
Hsp92I GRCGYC 2 cut(s) 44, 204
Hsp92II CATG 6 cut(s) 132, 455, 497, 709, 760, 872
HspAI GCGC 1 cut(s) 886
Ksp22I TGATCA 1 cut(s) 682
Kzo9I GATC 3 cut(s) 427, 643, 682
LmnI GCTCC 5 cut(s) 443, 497, 557, 611, 872
Lsp1109I GCAGC 2 cut(s) 281, 727
LweI GCATC 2 cut(s) 532, 685
MaeIII GTNAC 5 cut(s) 176, 233, 604, 794, 848
MalI GATC 3 cut(s) 429, 645, 684
MboI GATC 3 cut(s) 427, 643, 682
MboII GAAGA 2 cut(s) 288, 890
MflI RGATCY 1 cut(s) 643
MhlI GDGCHC 3 cut(s) 636, 677, 737
MluCI AATT 2 cut(s) 564, 594
MlyI GAGTC 2 cut(s) 101, 647
MmeI TCCRAC 1 cut(s) 449
Mph1103I ATGCAT 1 cut(s) 453
MseI TTAA 2 cut(s) 51, 690
MslI CAYNNNNRTG 1 cut(s) 322
MspA1I CMGCKG 3 cut(s) 308, 344, 740
MspI CCGG 1 cut(s) 889
MspR9I CCNGG 2 cut(s) 198, 890
MvaI CCWGG 1 cut(s) 198
MwoI GCNNNNNNNGC 6 cut(s) 18, 31, 63, 551, 776, 872
NciI CCSGG 1 cut(s) 890
NcoI CCATGG 1 cut(s) 705
NdeII GATC 3 cut(s) 427, 643, 682
NlaIII CATG 6 cut(s) 132, 455, 497, 709, 760, 872
NlaIV GGNNCC 3 cut(s) 514, 559, 857
NmuCI GTSAC 3 cut(s) 176, 604, 848
NsiI ATGCAT 1 cut(s) 453
PfeI GAWTC 1 cut(s) 763
PflMI CCANNNNNTGG 1 cut(s) 494
PkrI GCNGC 7 cut(s) 14, 43, 65, 271, 742, 750, 753
PleI GAGTC 2 cut(s) 100, 646
PpsI GAGTC 2 cut(s) 100, 646
Psp124BI GAGCTC 1 cut(s) 737
Psp6I CCWGG 1 cut(s) 196
PspFI CCCAGC 1 cut(s) 743
PspGI CCWGG 1 cut(s) 196
PspN4I GGNNCC 3 cut(s) 514, 559, 857
PspPI GGNCC 4 cut(s) 33, 405, 513, 746
PstNI CAGNNNCTG 1 cut(s) 743
PsuI RGATCY 1 cut(s) 643
PvuII CAGCTG 3 cut(s) 308, 344, 740
RseI CAYNNNNRTG 1 cut(s) 322
SacI GAGCTC 1 cut(s) 737
SaqAI TTAA 2 cut(s) 51, 690
SatI GCNGC 7 cut(s) 13, 42, 64, 270, 741, 749, 752
Sau3AI GATC 3 cut(s) 427, 643, 682
Sau96I GGNCC 4 cut(s) 33, 405, 513, 746
SchI GAGTC 2 cut(s) 101, 647
ScrFI CCNGG 2 cut(s) 198, 890
SduI GDGCHC 3 cut(s) 636, 677, 737
SfaNI GCATC 2 cut(s) 532, 685
SfcI CTRYAG 1 cut(s) 783
SmiMI CAYNNNNRTG 1 cut(s) 322
SmlI CTYRAG 1 cut(s) 668
SmoI CTYRAG 1 cut(s) 668
Sse9I AATT 2 cut(s) 564, 594
SsiI CCGC 6 cut(s) 12, 15, 41, 63, 749, 752
SstI GAGCTC 1 cut(s) 737
StyD4I CCNGG 2 cut(s) 196, 888
StyI CCWWGG 1 cut(s) 705
TaaI ACNGT 2 cut(s) 321, 386
TaqI TCGA 1 cut(s) 122
TasI AATT 2 cut(s) 564, 594
TauI GCSGC 5 cut(s) 15, 44, 66, 751, 754
TfiI GAWTC 1 cut(s) 763
Tru1I TTAA 2 cut(s) 51, 690
Tru9I TTAA 2 cut(s) 51, 690
TscAI CASTG 2 cut(s) 415, 706
TseFI GTSAC 3 cut(s) 176, 604, 848
TseI GCWGC 2 cut(s) 269, 740
Tsp45I GTSAC 3 cut(s) 176, 604, 848
TspDTI ATGAA 1 cut(s) 408
TspRI CASTG 2 cut(s) 415, 706
Van91I CCANNNNNTGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 594
XcmI CCANNNNNNNNNTGG 2 cut(s) 85, 866
Zsp2I ATGCAT 1 cut(s) 453
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.