Rh3BG262400

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0001285
Physical Location & Seq
Reverse (-)
25419521 .. 25423221
3701 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG262400.1

Sequence Viewer

Length: 714 bp
ATGAATCTTGCACCTCCTCCTCAATCATCTAGAAACTTTGCAGGCCCACCATCCCATTCAAATGGTTCCAGTGCACCTTCTGTTAAAACCCGCTTATGCAATAAATTTAATTCTGCCGAAGGCTGCAAATTTGGTGACAAATGCCATTTTGCACATGGTGAGAGGGAACTTGGCAAGCCCGTTTCTCAGTCATATGGCCATGATGATCCCCGTGCCGTGGCACCTGCTCCAGGCCGTATGGGTAATTGGATGGAGCCAGGGCATGCACCCCTGCAAGGGCCGGCATCTAGTTTTGGTGCTTCATCTACTGCGAAGATCAGTGTAGATGCTTCACTTGCAGGAGCCATTATTGGGAAGGGTGGTGTAAATTCAAAGCACATTTGTCACCAGACAGGAGCCAAACTTGCAATTCGGGACCATGAGTCAGATCCCAATCTCAGGAACATTGAACTCGAGGGAACCTTTGAACAGATTCAGCAAGCTAGTGCCTTGGTGAGAGAGCTAATTCAGAGCGTCTTGATATCTGGCCCTAACAAAACCCCTGGAAGAGGAGGCCCCGGAGCCCCCGCTCCTCCAGGAAGCAACTATAGGACAAAGCTATGCGATAATTTTACAAAAGGGACTTGCACCTTTGGAGAAAGATGCCACTTTGCACATGGAGCTGCTGAATTGCGCAAGCCTGGAGTATCAACCAAGCCAGCAACGGAACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

237

Amino Acids

24.8

Weight (kDa)

9.14

Isoelectric Point (pI)

46.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-CCCH PF00642 29 - 54 1e-05 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
KH_1 PF00013 103 - 167 3.6e-13 KH domain
zf-CCCH PF00642 196 - 220 2.7e-08 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 232
Acc16I TGCGCA 1 cut(s) 674
Acc36I ACCTGC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 220
AccBSI CCGCTC 1 cut(s) 569
AciI CCGC 2 cut(s) 91, 567
AclWI GGATC 2 cut(s) 200, 422
AcoI YGGCCR 1 cut(s) 196
AcsI RAATTY 3 cut(s) 104, 128, 367
AdeI CACNNNGTG 1 cut(s) 158
AfiI CCNNNNNNNGG 7 cut(s) 217, 230, 275, 276, 351, 438, 548
AgsI TTSAA 4 cut(s) 60, 372, 449, 467
AhdI GACNNNNNGTC 1 cut(s) 421
AjnI CCWGG 5 cut(s) 229, 256, 541, 574, 679
AluBI AGCT 4 cut(s) 482, 502, 598, 662
AluI AGCT 4 cut(s) 482, 502, 598, 662
Alw21I GWGCWC 1 cut(s) 76
Alw44I GTGCAC 1 cut(s) 72
AlwI GGATC 2 cut(s) 200, 422
Ama87I CYCGRG 1 cut(s) 452
AoxI GGCC 6 cut(s) 43, 196, 232, 278, 526, 553
ApaLI GTGCAC 1 cut(s) 72
ApeKI GCWGC 2 cut(s) 123, 662
ApoI RAATTY 3 cut(s) 104, 128, 367
Asp700I GAANNNNTTC 1 cut(s) 471
AspLEI GCGC 1 cut(s) 675
AspS9I GGNCC 5 cut(s) 44, 278, 415, 527, 554
AsuC2I CCSGG 1 cut(s) 558
AsuHPI GGTGA 4 cut(s) 146, 170, 377, 505
AvaI CYCGRG 1 cut(s) 452
AvaII GGWCC 1 cut(s) 415
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 198
BanI GGYRCC 1 cut(s) 220
BanII GRGCYC 1 cut(s) 565
Bbv12I GWGCWC 1 cut(s) 76
BbvI GCAGC 2 cut(s) 110, 649
BccI CCATC 2 cut(s) 58, 244
BceAI ACGGC 2 cut(s) 200, 219
BciT130I CCWGG 5 cut(s) 231, 258, 543, 576, 681
BcnI CCSGG 1 cut(s) 558
BfaI CTAG 3 cut(s) 30, 288, 483
BfmI CTRYAG 1 cut(s) 586
BfuAI ACCTGC 1 cut(s) 232
BisI GCNGC 2 cut(s) 124, 663
BlsI GCNGC 2 cut(s) 125, 664
Bme1390I CCNGG 6 cut(s) 231, 258, 543, 558, 576, 681
Bme18I GGWCC 1 cut(s) 415
BmeRI GACNNNNNGTC 1 cut(s) 421
BmeT110I CYCGRG 1 cut(s) 452
BmgT120I GGNCC 5 cut(s) 44, 278, 415, 527, 554
BmiI GGNNCC 9 cut(s) 67, 222, 255, 343, 397, 416, 460, 556, 562
BmrFI CCNGG 6 cut(s) 231, 258, 543, 558, 576, 681
BmsI GCATC 3 cut(s) 293, 316, 632
BpmI CTGGAG 3 cut(s) 213, 558, 702
BpuMI CCSGG 1 cut(s) 558
BsaBI GATNNNNATC 1 cut(s) 432
BsaJI CCNNGG 5 cut(s) 216, 257, 489, 541, 556
Bsc4I CCNNNNNNNGG 7 cut(s) 217, 230, 275, 276, 351, 438, 548
Bse118I RCCGGY 1 cut(s) 280
Bse1I ACTGG 1 cut(s) 69
Bse8I GATNNNNATC 1 cut(s) 432
BseBI CCWGG 5 cut(s) 231, 258, 543, 576, 681
BseDI CCNNGG 5 cut(s) 216, 257, 489, 541, 556
BseGI GGATG 2 cut(s) 50, 255
BseJI GATNNNNATC 1 cut(s) 432
BseLI CCNNNNNNNGG 7 cut(s) 217, 230, 275, 276, 351, 438, 548
BseMII CTCAG 2 cut(s) 200, 451
BseNI ACTGG 1 cut(s) 69
BseRI GAGGAG 4 cut(s) 6, 9, 561, 564
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 2 cut(s) 110, 649
BshFI GGCC 6 cut(s) 45, 198, 234, 280, 528, 555
BshNI GGYRCC 1 cut(s) 220
BsiHKAI GWGCWC 1 cut(s) 76
BsiHKCI CYCGRG 1 cut(s) 452
BsiSI CCGG 2 cut(s) 281, 558
BslFI GGGAC 2 cut(s) 428, 634
BslI CCNNNNNNNGG 7 cut(s) 217, 230, 275, 276, 351, 438, 548
BsmFI GGGAC 2 cut(s) 428, 634
BsnI GGCC 6 cut(s) 45, 198, 234, 280, 528, 555
BsoBI CYCGRG 1 cut(s) 452
Bsp1286I GDGCHC 2 cut(s) 76, 565
Bsp143I GATC 3 cut(s) 205, 315, 427
BspACI CCGC 2 cut(s) 91, 567
BspANI GGCC 6 cut(s) 45, 198, 234, 280, 528, 555
BspCNI CTCAG 2 cut(s) 199, 450
BspLI GGNNCC 9 cut(s) 67, 222, 255, 343, 397, 416, 460, 556, 562
BspMI ACCTGC 1 cut(s) 232
BspPI GGATC 2 cut(s) 200, 422
BspT107I GGYRCC 1 cut(s) 220
BsrBI CCGCTC 1 cut(s) 569
BsrFI RCCGGY 1 cut(s) 280
BsrI ACTGG 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 280
BssECI CCNNGG 5 cut(s) 216, 257, 489, 541, 556
BssMI GATC 3 cut(s) 205, 315, 427
BssT1I CCWWGG 1 cut(s) 489
Bst2UI CCWGG 5 cut(s) 231, 258, 543, 576, 681
Bst4CI ACNGT 1 cut(s) 711
Bst6I CTCTTC 1 cut(s) 541
BstC8I GCNNGC 7 cut(s) 43, 176, 264, 282, 480, 677, 699
BstDEI CTNAG 2 cut(s) 186, 437
BstDSI CCRYGG 1 cut(s) 216
BstENI CCTNNNNNAGG 2 cut(s) 228, 546
BstF5I GGATG 2 cut(s) 50, 255
BstHHI GCGC 1 cut(s) 675
BstKTI GATC 3 cut(s) 208, 318, 430
BstMBI GATC 3 cut(s) 205, 315, 427
BstMWI GCNNNNNNNGC 3 cut(s) 335, 404, 659
BstNI CCWGG 5 cut(s) 231, 258, 543, 576, 681
BstNSI RCATGY 1 cut(s) 266
BstSCI CCNGG 6 cut(s) 229, 256, 541, 556, 574, 679
BstSFI CTRYAG 1 cut(s) 586
BstSLI GKGCMC 1 cut(s) 76
BstV1I GCAGC 2 cut(s) 110, 649
BstX2I RGATCY 1 cut(s) 427
BstXI CCANNNNNNTGG 1 cut(s) 62
BstYI RGATCY 1 cut(s) 427
BsuRI GGCC 6 cut(s) 45, 198, 234, 280, 528, 555
BtgI CCRYGG 1 cut(s) 216
BtsCI GGATG 2 cut(s) 50, 255
BtsIMutI CAGTG 2 cut(s) 76, 325
BveI ACCTGC 1 cut(s) 232
Cac8I GCNNGC 7 cut(s) 43, 176, 264, 282, 480, 677, 699
CfoI GCGC 1 cut(s) 675
Cfr10I RCCGGY 1 cut(s) 280
Cfr13I GGNCC 5 cut(s) 44, 278, 415, 527, 554
CseI GACGC 1 cut(s) 502
CviAII CATG 5 cut(s) 155, 200, 263, 419, 656
DdeI CTNAG 2 cut(s) 186, 437
DpnI GATC 3 cut(s) 207, 317, 429
DpnII GATC 3 cut(s) 205, 315, 427
DraIII CACNNNGTG 1 cut(s) 158
DriI GACNNNNNGTC 1 cut(s) 421
EaeI YGGCCR 1 cut(s) 196
Eam1104I CTCTTC 1 cut(s) 541
Eam1105I GACNNNNNGTC 1 cut(s) 421
EarI CTCTTC 1 cut(s) 541
Eco130I CCWWGG 1 cut(s) 489
Eco24I GRGCYC 1 cut(s) 565
Eco32I GATATC 1 cut(s) 522
Eco47I GGWCC 1 cut(s) 415
Eco88I CYCGRG 1 cut(s) 452
EcoNI CCTNNNNNAGG 2 cut(s) 228, 546
EcoO109I RGGNCCY 1 cut(s) 554
EcoRII CCWGG 5 cut(s) 229, 256, 541, 574, 679
EcoRV GATATC 1 cut(s) 522
EcoT14I CCWWGG 1 cut(s) 489
EcoT38I GRGCYC 1 cut(s) 565
ErhI CCWWGG 1 cut(s) 489
FaeI CATG 5 cut(s) 158, 203, 266, 422, 659
FaqI GGGAC 2 cut(s) 428, 634
FatI CATG 5 cut(s) 154, 199, 262, 418, 655
FauI CCCGC 2 cut(s) 98, 574
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 2 cut(s) 124, 663
FokI GGATG 2 cut(s) 37, 262
FriOI GRGCYC 1 cut(s) 565
Fsp4HI GCNGC 2 cut(s) 124, 663
FspBI CTAG 3 cut(s) 30, 288, 483
FspI TGCGCA 1 cut(s) 674
GlaI GCGC 1 cut(s) 674
GluI GCNGC 2 cut(s) 124, 663
GsuI CTGGAG 3 cut(s) 213, 558, 702
HaeIII GGCC 6 cut(s) 45, 198, 234, 280, 528, 555
HapII CCGG 2 cut(s) 281, 558
HgaI GACGC 1 cut(s) 502
HhaI GCGC 1 cut(s) 675
Hin1II CATG 5 cut(s) 158, 203, 266, 422, 659
Hin6I GCGC 1 cut(s) 673
HinP1I GCGC 1 cut(s) 673
HinfI GANTC 3 cut(s) 4, 422, 472
HpaII CCGG 2 cut(s) 281, 558
HphI GGTGA 4 cut(s) 146, 170, 377, 505
Hpy166II GTNNAC 1 cut(s) 74
Hpy188I TCNGA 2 cut(s) 427, 510
Hpy188III TCNNGA 4 cut(s) 30, 413, 439, 517
Hpy8I GTNNAC 1 cut(s) 74
HpyAV CCTTC 3 cut(s) 87, 113, 349
HpyCH4III ACNGT 1 cut(s) 711
HpyF10VI GCNNNNNNNGC 3 cut(s) 335, 404, 659
HpyF3I CTNAG 2 cut(s) 186, 437
Hsp92II CATG 5 cut(s) 158, 203, 266, 422, 659
HspAI GCGC 1 cut(s) 673
KroI GCCGGC 1 cut(s) 280
KroNI GCCGGC 1 cut(s) 282
Kzo9I GATC 3 cut(s) 205, 315, 427
LmnI GCTCC 7 cut(s) 232, 253, 341, 395, 560, 574, 659
Lsp1109I GCAGC 2 cut(s) 110, 649
LweI GCATC 3 cut(s) 293, 316, 632
MaeI CTAG 3 cut(s) 30, 288, 483
MaeIII GTNAC 2 cut(s) 134, 383
MalI GATC 3 cut(s) 207, 317, 429
MbiI CCGCTC 1 cut(s) 569
MboI GATC 3 cut(s) 205, 315, 427
MboII GAAGA 2 cut(s) 325, 558
MflI RGATCY 1 cut(s) 427
MhlI GDGCHC 2 cut(s) 76, 565
MlsI TGGCCA 1 cut(s) 198
MluCI AATT 9 cut(s) 104, 109, 128, 244, 367, 408, 504, 607, 668
MluNI TGGCCA 1 cut(s) 198
MlyI GAGTC 1 cut(s) 431
MnlI CCTC 8 cut(s) 24, 27, 30, 156, 448, 542, 545, 582
Mox20I TGGCCA 1 cut(s) 198
MroNI GCCGGC 1 cut(s) 280
MroXI GAANNNNTTC 1 cut(s) 471
MscI TGGCCA 1 cut(s) 198
MseI TTAA 2 cut(s) 84, 108
MslI CAYNNNNRTG 1 cut(s) 60
Msp20I TGGCCA 1 cut(s) 198
MspI CCGG 2 cut(s) 281, 558
MspR9I CCNGG 6 cut(s) 231, 258, 543, 558, 576, 681
MvaI CCWGG 5 cut(s) 231, 258, 543, 576, 681
MwoI GCNNNNNNNGC 3 cut(s) 335, 404, 659
NaeI GCCGGC 1 cut(s) 282
NciI CCSGG 1 cut(s) 558
NdeI CATATG 1 cut(s) 193
NdeII GATC 3 cut(s) 205, 315, 427
NgoMIV GCCGGC 1 cut(s) 280
NlaIII CATG 5 cut(s) 158, 203, 266, 422, 659
NlaIV GGNNCC 9 cut(s) 67, 222, 255, 343, 397, 416, 460, 556, 562
NmuCI GTSAC 2 cut(s) 134, 383
NsbI TGCGCA 1 cut(s) 674
NspI RCATGY 1 cut(s) 266
PaeI GCATGC 1 cut(s) 266
PaeR7I CTCGAG 1 cut(s) 452
PaqCI CACCTGC 1 cut(s) 232
PdiI GCCGGC 1 cut(s) 282
PdmI GAANNNNTTC 1 cut(s) 471
PfeI GAWTC 2 cut(s) 4, 472
PfoI TCCNGGA 1 cut(s) 574
PkrI GCNGC 2 cut(s) 125, 664
PleI GAGTC 1 cut(s) 430
PpsI GAGTC 1 cut(s) 430
Psp6I CCWGG 5 cut(s) 229, 256, 541, 574, 679
PspGI CCWGG 5 cut(s) 229, 256, 541, 574, 679
PspN4I GGNNCC 9 cut(s) 67, 222, 255, 343, 397, 416, 460, 556, 562
PspPI GGNCC 5 cut(s) 44, 278, 415, 527, 554
PspXI VCTCGAGB 1 cut(s) 452
PsuI RGATCY 1 cut(s) 427
RseI CAYNNNNRTG 1 cut(s) 60
SaqAI TTAA 2 cut(s) 84, 108
SatI GCNGC 2 cut(s) 124, 663
Sau3AI GATC 3 cut(s) 205, 315, 427
Sau96I GGNCC 5 cut(s) 44, 278, 415, 527, 554
SchI GAGTC 1 cut(s) 431
ScrFI CCNGG 6 cut(s) 231, 258, 543, 558, 576, 681
SduI GDGCHC 2 cut(s) 76, 565
SetI ASST 9 cut(s) 16, 79, 226, 464, 484, 504, 600, 632, 664
SfaNI GCATC 3 cut(s) 293, 316, 632
SfcI CTRYAG 1 cut(s) 586
Sfr274I CTCGAG 1 cut(s) 452
SinI GGWCC 1 cut(s) 415
SlaI CTCGAG 1 cut(s) 452
SmiMI CAYNNNNRTG 1 cut(s) 60
SmlI CTYRAG 1 cut(s) 452
SmoI CTYRAG 1 cut(s) 452
SphI GCATGC 1 cut(s) 266
Sse9I AATT 9 cut(s) 104, 109, 128, 244, 367, 408, 504, 607, 668
SsiI CCGC 2 cut(s) 91, 567
SspMI CTAG 3 cut(s) 30, 288, 483
StyD4I CCNGG 6 cut(s) 229, 256, 541, 556, 574, 679
StyI CCWWGG 1 cut(s) 489
TaaI ACNGT 1 cut(s) 711
TaqI TCGA 1 cut(s) 453
TasI AATT 9 cut(s) 104, 109, 128, 244, 367, 408, 504, 607, 668
TfiI GAWTC 2 cut(s) 4, 472
Tru1I TTAA 2 cut(s) 84, 108
Tru9I TTAA 2 cut(s) 84, 108
TscAI CASTG 2 cut(s) 76, 325
TseFI GTSAC 2 cut(s) 134, 383
TseI GCWGC 2 cut(s) 123, 662
Tsp45I GTSAC 2 cut(s) 134, 383
TspDTI ATGAA 2 cut(s) 17, 291
TspRI CASTG 2 cut(s) 76, 325
VneI GTGCAC 1 cut(s) 72
VpaK11BI GGWCC 1 cut(s) 415
XagI CCTNNNNNAGG 2 cut(s) 228, 546
XapI RAATTY 3 cut(s) 104, 128, 367
XbaI TCTAGA 1 cut(s) 29
XceI RCATGY 1 cut(s) 266
XcmI CCANNNNNNNNNTGG 2 cut(s) 152, 653
XhoI CTCGAG 1 cut(s) 452
XmnI GAANNNNTTC 1 cut(s) 471
XspI CTAG 3 cut(s) 30, 288, 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.