Prupe.6G014800_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp06
OG0001285
Physical Location & Seq
Reverse (-)
1078380 .. 1082187
3808 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.6G014800.1

Sequence Viewer

Length: 909 bp
ATGGACTTTGGAGGCGGGCGCAAGAGAGGCAGGCTCGAAGCTGCCTCCTTTAATGGCAATGGCGGCTTCAAGAAATCCAAGCCAGAAATGGAGTCCTTTACAACTGGTATAGGAAGCAAATCGAAGCCATGCACAAAGTTTTTCAGCACATCTGGGTGCCCTTTTGGTGAGGGATGTCACTTCTTGCATTATGTTCCTGGTGGCATCAAAGCGGTGTCTCAGATGACTGGTAGCAACCCAACTCTTCCTCCTCCTCCTAGAAACTCAGCAGCCCCTCCATCATTTCCAGATGGTTCTTCTCCTCCATCTGTCAAGACCCGGTTGTGTAATAAGTACAACACAGTTGAAGGTTGCAAGTTTGGGGATAAATGCCATTTTGCGCATGGTGAGTGGGAGCTTGGGAGGCCCACTGCTCAATCCTATGAAGATCCTCGTGGTGGGGGAGGATATCCAGGCAGGATGGGAGGAGGTCGGATGGAGCCTCCCCAGCAAACTCATGGAGCTGCAGCGAGATTTGGAGCCACTGCCACAGCTAAGATCAGCGTTGATGCTTCACTTGCTGGAGCCATAATTGGGAAAAATGGTGTGAACTCAAAGCAAATATGTCGTGTGACTGGGGCAAAACTTTCTATAAGGGAGCATGAGTCAGATCCCAAGCTGAGAAACATTGAGCTTGAGGGTACCTTCGATCAAATTAAAGATGCCAGTGCTATGGTTCGTGAGCTTATTGTGAACGTGAGCTCAGCTGCTGGACCTCACATGAGGAACAACCCTGGTATGGCAGCCTCAGCGCCAGCAAGCAACTTCAAGACTAAGCTTTGTGAGAACTTTACTAAAGGCACATGCACGTTTGGGGACAGGTGCCACTTTGCACATGGACCTGAAGAATTGCGCAGGCAGGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

303

Amino Acids

32.03

Weight (kDa)

9.39

Isoelectric Point (pI)

36.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 381, 893
Acc65I GGTACC 1 cut(s) 680
AccB1I GGYRCC 3 cut(s) 156, 680, 861
AciI CCGC 3 cut(s) 15, 63, 212
AclWI GGATC 2 cut(s) 422, 644
AcuI CTGAAG 1 cut(s) 903
AfaI GTAC 2 cut(s) 335, 682
AfiI CCNNNNNNNGG 3 cut(s) 437, 573, 778
AgsI TTSAA 3 cut(s) 70, 347, 808
AjnI CCWGG 3 cut(s) 196, 451, 772
Alw21I GWGCWC 1 cut(s) 743
Alw26I GTCTC 1 cut(s) 222
AlwI GGATC 2 cut(s) 422, 644
AlwNI CAGNNNCTG 1 cut(s) 749
AoxI GGCC 1 cut(s) 404
ApeKI GCWGC 6 cut(s) 41, 269, 503, 506, 746, 782
Asp718I GGTACC 1 cut(s) 680
AspLEI GCGC 4 cut(s) 21, 382, 793, 894
AspS9I GGNCC 3 cut(s) 405, 752, 878
AsuC2I CCSGG 1 cut(s) 319
AsuHPI GGTGA 2 cut(s) 179, 398
AvaII GGWCC 2 cut(s) 752, 878
BaeGI GKGCMC 1 cut(s) 161
BanI GGYRCC 3 cut(s) 156, 680, 861
BanII GRGCYC 1 cut(s) 743
BauI CACGAG 1 cut(s) 432
Bbv12I GWGCWC 1 cut(s) 743
BbvCI CCTCAGC 1 cut(s) 787
BbvI GCAGC 6 cut(s) 28, 281, 490, 518, 733, 794
BccI CCATC 5 cut(s) 284, 286, 313, 454, 469
BcgI CGANNNNNNTGC 2 cut(s) 587, 621
BciT130I CCWGG 3 cut(s) 198, 453, 774
BcnI CCSGG 1 cut(s) 319
BcoDI GTCTC 1 cut(s) 222
BfaI CTAG 1 cut(s) 258
BfmI CTRYAG 1 cut(s) 504
BfoI RGCGCY 1 cut(s) 794
BisI GCNGC 7 cut(s) 42, 64, 270, 504, 507, 747, 783
BlpI GCTNAGC 1 cut(s) 742
BlsI GCNGC 7 cut(s) 43, 65, 271, 505, 508, 748, 784
Bme1390I CCNGG 4 cut(s) 198, 319, 453, 774
Bme18I GGWCC 2 cut(s) 752, 878
BmgT120I GGNCC 3 cut(s) 405, 752, 878
BmiI GGNNCC 6 cut(s) 158, 480, 520, 565, 682, 863
BmrFI CCNGG 4 cut(s) 198, 319, 453, 774
BmrI ACTGGG 1 cut(s) 624
BmsI GCATC 3 cut(s) 213, 538, 691
BmuI ACTGGG 1 cut(s) 624
BplI GAGNNNNNCTC 2 cut(s) 18, 50
BpmI CTGGAG 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 787
Bpu1102I GCTNAGC 1 cut(s) 742
BpuEI CTTGAG 1 cut(s) 695
BpuMI CCSGG 1 cut(s) 319
BsaJI CCNNGG 1 cut(s) 772
BsaXI ACNNNNNCTCC 4 cut(s) 232, 262, 629, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 437, 573, 778
Bse1I ACTGG 4 cut(s) 109, 232, 619, 705
Bse3DI GCAATG 1 cut(s) 64
BseBI CCWGG 3 cut(s) 198, 453, 774
BseDI CCNNGG 1 cut(s) 772
BseGI GGATG 4 cut(s) 179, 465, 480, 909
BseLI CCNNNNNNNGG 3 cut(s) 437, 573, 778
BseMI GCAATG 1 cut(s) 64
BseMII CTCAG 5 cut(s) 233, 279, 650, 756, 801
BseNI ACTGG 4 cut(s) 109, 232, 619, 705
BseRI GAGGAG 4 cut(s) 240, 243, 291, 480
BseSI GKGCMC 1 cut(s) 161
BseXI GCAGC 6 cut(s) 28, 281, 490, 518, 733, 794
BseYI CCCAGC 1 cut(s) 486
BshFI GGCC 1 cut(s) 406
BshNI GGYRCC 3 cut(s) 156, 680, 861
BsiHKAI GWGCWC 1 cut(s) 743
BsiSI CCGG 1 cut(s) 319
BslFI GGGAC 1 cut(s) 869
BslI CCNNNNNNNGG 3 cut(s) 437, 573, 778
BsmAI GTCTC 1 cut(s) 222
BsmFI GGGAC 1 cut(s) 869
BsnI GGCC 1 cut(s) 406
Bsp1286I GDGCHC 2 cut(s) 161, 743
Bsp143I GATC 4 cut(s) 427, 537, 649, 688
Bsp1720I GCTNAGC 1 cut(s) 742
BspACI CCGC 3 cut(s) 15, 63, 212
BspANI GGCC 1 cut(s) 406
BspCNI CTCAG 5 cut(s) 232, 278, 651, 755, 800
BspLI GGNNCC 6 cut(s) 158, 480, 520, 565, 682, 863
BspMAI CTGCAG 1 cut(s) 508
BspPI GGATC 2 cut(s) 422, 644
BspT107I GGYRCC 3 cut(s) 156, 680, 861
BsrDI GCAATG 1 cut(s) 64
BsrI ACTGG 4 cut(s) 109, 232, 619, 705
BssECI CCNNGG 1 cut(s) 772
BssMI GATC 4 cut(s) 427, 537, 649, 688
BssSI CACGAG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 432
Bst2UI CCWGG 3 cut(s) 198, 453, 774
Bst4CI ACNGT 1 cut(s) 343
Bst6I CTCTTC 1 cut(s) 249
BstC8I GCNNGC 5 cut(s) 17, 32, 795, 799, 896
BstDEI CTNAG 7 cut(s) 219, 265, 534, 659, 742, 787, 813
BstF5I GGATG 4 cut(s) 179, 465, 480, 909
BstH2I RGCGCY 1 cut(s) 794
BstHHI GCGC 4 cut(s) 21, 382, 793, 894
BstKTI GATC 4 cut(s) 430, 540, 652, 691
BstMAI GTCTC 1 cut(s) 222
BstMBI GATC 4 cut(s) 427, 537, 649, 688
BstMWI GCNNNNNNNGC 6 cut(s) 27, 63, 403, 487, 557, 788
BstNI CCWGG 3 cut(s) 198, 453, 774
BstNSI RCATGY 1 cut(s) 846
BstSCI CCNGG 4 cut(s) 196, 317, 451, 772
BstSFI CTRYAG 1 cut(s) 504
BstSLI GKGCMC 1 cut(s) 161
BstV1I GCAGC 6 cut(s) 28, 281, 490, 518, 733, 794
BstX2I RGATCY 2 cut(s) 427, 649
BstXI CCANNNNNNTGG 1 cut(s) 712
BstYI RGATCY 2 cut(s) 427, 649
BsuRI GGCC 1 cut(s) 406
BtsCI GGATG 4 cut(s) 179, 465, 480, 909
BtsI GCAGTG 2 cut(s) 408, 522
BtsIMutI CAGTG 3 cut(s) 408, 522, 712
Cac8I GCNNGC 5 cut(s) 17, 32, 795, 799, 896
CaiI CAGNNNCTG 1 cut(s) 749
CfoI GCGC 4 cut(s) 21, 382, 793, 894
Cfr13I GGNCC 3 cut(s) 405, 752, 878
Csp6I GTAC 2 cut(s) 334, 681
CviAII CATG 7 cut(s) 129, 383, 497, 641, 760, 843, 875
CviQI GTAC 2 cut(s) 334, 681
DdeI CTNAG 7 cut(s) 219, 265, 534, 659, 742, 787, 813
DpnI GATC 4 cut(s) 429, 539, 651, 690
DpnII GATC 4 cut(s) 427, 537, 649, 688
Eam1104I CTCTTC 1 cut(s) 249
EarI CTCTTC 1 cut(s) 249
Ecl136II GAGCTC 1 cut(s) 741
Eco24I GRGCYC 1 cut(s) 743
Eco32I GATATC 1 cut(s) 449
Eco47I GGWCC 2 cut(s) 752, 878
Eco53kI GAGCTC 1 cut(s) 741
Eco57I CTGAAG 1 cut(s) 903
EcoICRI GAGCTC 1 cut(s) 741
EcoRII CCWGG 3 cut(s) 196, 451, 772
EcoRV GATATC 1 cut(s) 449
EcoT38I GRGCYC 1 cut(s) 743
FaeI CATG 7 cut(s) 132, 386, 500, 644, 763, 846, 878
FaqI GGGAC 1 cut(s) 869
FatI CATG 7 cut(s) 128, 382, 496, 640, 759, 842, 874
FauI CCCGC 1 cut(s) 8
Fnu4HI GCNGC 7 cut(s) 42, 64, 270, 504, 507, 747, 783
FokI GGATG 3 cut(s) 186, 472, 487
FriOI GRGCYC 1 cut(s) 743
Fsp4HI GCNGC 7 cut(s) 42, 64, 270, 504, 507, 747, 783
FspBI CTAG 1 cut(s) 258
FspI TGCGCA 2 cut(s) 381, 893
GlaI GCGC 4 cut(s) 20, 381, 792, 893
GluI GCNGC 7 cut(s) 42, 64, 270, 504, 507, 747, 783
GsaI CCCAGC 1 cut(s) 490
GsuI CTGGAG 1 cut(s) 582
HaeII RGCGCY 1 cut(s) 794
HaeIII GGCC 1 cut(s) 406
HapII CCGG 1 cut(s) 319
HhaI GCGC 4 cut(s) 21, 382, 793, 894
Hin1II CATG 7 cut(s) 132, 386, 500, 644, 763, 846, 878
Hin6I GCGC 4 cut(s) 19, 380, 791, 892
HinP1I GCGC 4 cut(s) 19, 380, 791, 892
HindIII AAGCTT 1 cut(s) 815
HinfI GANTC 2 cut(s) 92, 644
HpaII CCGG 1 cut(s) 319
HphI GGTGA 2 cut(s) 179, 398
Hpy166II GTNNAC 2 cut(s) 589, 733
Hpy188I TCNGA 3 cut(s) 222, 474, 649
Hpy188III TCNNGA 5 cut(s) 70, 287, 313, 719, 808
Hpy8I GTNNAC 2 cut(s) 589, 733
HpyAV CCTTC 2 cut(s) 341, 694
HpyCH4III ACNGT 1 cut(s) 343
HpyCH4IV ACGT 2 cut(s) 735, 848
HpyCH4V TGCA 6 cut(s) 132, 187, 354, 506, 846, 872
HpyF10VI GCNNNNNNNGC 6 cut(s) 27, 63, 403, 487, 557, 788
HpyF3I CTNAG 7 cut(s) 219, 265, 534, 659, 742, 787, 813
HpySE526I ACGT 2 cut(s) 735, 848
Hsp92II CATG 7 cut(s) 132, 386, 500, 644, 763, 846, 878
HspAI GCGC 4 cut(s) 19, 380, 791, 892
KpnI GGTACC 1 cut(s) 684
Kzo9I GATC 4 cut(s) 427, 537, 649, 688
LmnI GCTCC 6 cut(s) 394, 478, 500, 518, 563, 637
Lsp1109I GCAGC 6 cut(s) 28, 281, 490, 518, 733, 794
LweI GCATC 3 cut(s) 213, 538, 691
MaeI CTAG 1 cut(s) 258
MaeII ACGT 2 cut(s) 735, 848
MaeIII GTNAC 2 cut(s) 176, 610
MalI GATC 4 cut(s) 429, 539, 651, 690
MboI GATC 4 cut(s) 427, 537, 649, 688
MboII GAAGA 4 cut(s) 236, 288, 437, 896
MflI RGATCY 2 cut(s) 427, 649
MhlI GDGCHC 2 cut(s) 161, 743
MluCI AATT 3 cut(s) 570, 693, 887
MlyI GAGTC 2 cut(s) 101, 653
MmeI TCCRAC 1 cut(s) 452
MseI TTAA 2 cut(s) 51, 696
MslI CAYNNNNRTG 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 746
MspI CCGG 1 cut(s) 319
MspR9I CCNGG 4 cut(s) 198, 319, 453, 774
MvaI CCWGG 3 cut(s) 198, 453, 774
MwoI GCNNNNNNNGC 6 cut(s) 27, 63, 403, 487, 557, 788
NciI CCSGG 1 cut(s) 319
NdeII GATC 4 cut(s) 427, 537, 649, 688
NlaIII CATG 7 cut(s) 132, 386, 500, 644, 763, 846, 878
NlaIV GGNNCC 6 cut(s) 158, 480, 520, 565, 682, 863
NmuCI GTSAC 2 cut(s) 176, 610
NsbI TGCGCA 2 cut(s) 381, 893
NspI RCATGY 1 cut(s) 846
PkrI GCNGC 7 cut(s) 43, 65, 271, 505, 508, 748, 784
PleI GAGTC 2 cut(s) 100, 652
PpsI GAGTC 2 cut(s) 100, 652
Psp124BI GAGCTC 1 cut(s) 743
Psp6I CCWGG 3 cut(s) 196, 451, 772
PspFI CCCAGC 1 cut(s) 486
PspGI CCWGG 3 cut(s) 196, 451, 772
PspN4I GGNNCC 6 cut(s) 158, 480, 520, 565, 682, 863
PspPI GGNCC 3 cut(s) 405, 752, 878
PstI CTGCAG 1 cut(s) 508
PstNI CAGNNNCTG 1 cut(s) 749
PsuI RGATCY 2 cut(s) 427, 649
PvuII CAGCTG 1 cut(s) 746
RsaI GTAC 2 cut(s) 335, 682
RsaNI GTAC 2 cut(s) 334, 681
RseI CAYNNNNRTG 1 cut(s) 154
SacI GAGCTC 1 cut(s) 743
SaqAI TTAA 2 cut(s) 51, 696
SatI GCNGC 7 cut(s) 42, 64, 270, 504, 507, 747, 783
Sau3AI GATC 4 cut(s) 427, 537, 649, 688
Sau96I GGNCC 3 cut(s) 405, 752, 878
SchI GAGTC 2 cut(s) 101, 653
ScrFI CCNGG 4 cut(s) 198, 319, 453, 774
SduI GDGCHC 2 cut(s) 161, 743
SfaNI GCATC 3 cut(s) 213, 538, 691
SfcI CTRYAG 1 cut(s) 504
SinI GGWCC 2 cut(s) 752, 878
SmiMI CAYNNNNRTG 1 cut(s) 154
SmlI CTYRAG 1 cut(s) 674
SmoI CTYRAG 1 cut(s) 674
Sse9I AATT 3 cut(s) 570, 693, 887
SsiI CCGC 3 cut(s) 15, 63, 212
SspMI CTAG 1 cut(s) 258
SstI GAGCTC 1 cut(s) 743
StyD4I CCNGG 4 cut(s) 196, 317, 451, 772
TaaI ACNGT 1 cut(s) 343
TaiI ACGT 2 cut(s) 738, 851
TaqI TCGA 3 cut(s) 36, 122, 687
TasI AATT 3 cut(s) 570, 693, 887
TatI WGTACW 1 cut(s) 333
TauI GCSGC 1 cut(s) 66
Tru1I TTAA 2 cut(s) 51, 696
Tru9I TTAA 2 cut(s) 51, 696
TscAI CASTG 3 cut(s) 415, 529, 712
TseFI GTSAC 2 cut(s) 176, 610
TseI GCWGC 6 cut(s) 41, 269, 503, 506, 746, 782
Tsp45I GTSAC 2 cut(s) 176, 610
TspDTI ATGAA 1 cut(s) 438
TspRI CASTG 3 cut(s) 415, 529, 712
VpaK11BI GGWCC 2 cut(s) 752, 878
XceI RCATGY 1 cut(s) 846
XcmI CCANNNNNNNNNTGG 4 cut(s) 85, 380, 494, 872
XspI CTAG 1 cut(s) 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.