Rorug05G0470100

zinc finger CCCH domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
64678558 .. 64679697
1140 bp
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UTR
Exon/CDS
Intron
Rorug05G0470100.1

Sequence Viewer

Length: 408 bp
ATGTCTGCCTATTCAGAAGGTATAGATATTGGAAAATTGCGACACAATGCACATGTCCACATTGAGAAGGTGTTCTTAGAGCTTGAGCAGAGTGAAGCTCAGAAGAAGGAGCTTAAGAAAAATCTTGAGCAGAGTGAGATGCAACTGCAAATCTTGAATGAGAAAGCTGCCATAGAGACAAATAAGGCCAATGAATTGGCGTCATGGTTGACAGAAGAAAGAAAGAAATGGGAAAGGGAGAAGCATAAACTTCAAGAAAGATTGAAGGAAAAGGAAGAAGAATTGGCCTCTAGTCAAGCATTTAACCAAGTACTTACTGTGAAGCTGAATGAACATAATGCTGAAATGCACAAGGCTCGTCATTCTGTGGTTCTGATTGGCTGTAAAGCTTATGCTGCGATGAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

135

Amino Acids

15.72

Weight (kDa)

7.07

Isoelectric Point (pI)

66.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcyI GRCGYC 1 cut(s) 200
AfaI GTAC 1 cut(s) 312
AflII CTTAAG 1 cut(s) 113
AflIII ACRYGT 1 cut(s) 52
AgsI TTSAA 3 cut(s) 157, 254, 265
AluBI AGCT 6 cut(s) 82, 98, 112, 167, 325, 389
AluI AGCT 6 cut(s) 82, 98, 112, 167, 325, 389
Alw26I GTCTC 1 cut(s) 170
AoxI GGCC 2 cut(s) 186, 285
ApeKI GCWGC 2 cut(s) 167, 395
Asp700I GAANNNNTTC 1 cut(s) 71
BbvI GCAGC 2 cut(s) 154, 382
BcgI CGANNNNNNTGC 2 cut(s) 338, 372
BcoDI GTCTC 1 cut(s) 170
BfaI CTAG 1 cut(s) 291
BfrI CTTAAG 1 cut(s) 113
BisI GCNGC 2 cut(s) 168, 396
BlsI GCNGC 2 cut(s) 169, 397
BmcAI AGTACT 1 cut(s) 312
BmsI GCATC 1 cut(s) 129
BplI GAGNNNNNCTC 2 cut(s) 82, 114
BpuEI CTTGAG 2 cut(s) 104, 146
BsaHI GRCGYC 1 cut(s) 200
BseMII CTCAG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 154, 382
BshFI GGCC 2 cut(s) 188, 287
BsmAI GTCTC 1 cut(s) 170
BsnI GGCC 2 cut(s) 188, 287
BspANI GGCC 2 cut(s) 188, 287
BspCNI CTCAG 1 cut(s) 112
BspTI CTTAAG 1 cut(s) 113
BssNI GRCGYC 1 cut(s) 200
Bst4CI ACNGT 1 cut(s) 319
BstACI GRCGYC 1 cut(s) 200
BstAFI CTTAAG 1 cut(s) 113
BstDEI CTNAG 2 cut(s) 76, 99
BstMAI GTCTC 1 cut(s) 170
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstNSI RCATGY 1 cut(s) 56
BstV1I GCAGC 2 cut(s) 154, 382
BstXI CCANNNNNNTGG 1 cut(s) 196
BsuRI GGCC 2 cut(s) 188, 287
CseI GACGC 1 cut(s) 189
Csp6I GTAC 1 cut(s) 311
CviAII CATG 2 cut(s) 53, 204
CviQI GTAC 1 cut(s) 311
DdeI CTNAG 2 cut(s) 76, 99
FaeI CATG 2 cut(s) 56, 207
FaiI YATR 7 cut(s) 23, 54, 173, 205, 246, 336, 393
FalI AAGNNNNNCTT 2 cut(s) 59, 91
FatI CATG 2 cut(s) 52, 203
Fnu4HI GCNGC 2 cut(s) 168, 396
Fsp4HI GCNGC 2 cut(s) 168, 396
FspBI CTAG 1 cut(s) 291
GluI GCNGC 2 cut(s) 168, 396
HaeIII GGCC 2 cut(s) 188, 287
HgaI GACGC 1 cut(s) 189
Hin1I GRCGYC 1 cut(s) 200
Hin1II CATG 2 cut(s) 56, 207
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HindIII AAGCTT 1 cut(s) 387
Hpy166II GTNNAC 2 cut(s) 58, 210
Hpy188I TCNGA 3 cut(s) 16, 102, 375
Hpy188III TCNNGA 3 cut(s) 125, 154, 254
Hpy8I GTNNAC 2 cut(s) 58, 210
HpyAV CCTTC 4 cut(s) 11, 61, 100, 259
HpyCH4III ACNGT 1 cut(s) 319
HpyCH4V TGCA 4 cut(s) 50, 142, 148, 349
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 2 cut(s) 76, 99
Hsp92I GRCGYC 1 cut(s) 200
Hsp92II CATG 2 cut(s) 56, 207
LmnI GCTCC 1 cut(s) 109
Lsp1109I GCAGC 2 cut(s) 154, 382
LweI GCATC 1 cut(s) 129
MaeI CTAG 1 cut(s) 291
MboII GAAGA 4 cut(s) 115, 227, 287, 290
MluCI AATT 3 cut(s) 35, 194, 281
MnlI CCTC 1 cut(s) 298
MroXI GAANNNNTTC 1 cut(s) 71
MseI TTAA 2 cut(s) 114, 303
MspCI CTTAAG 1 cut(s) 113
MwoI GCNNNNNNNGC 1 cut(s) 395
NlaIII CATG 2 cut(s) 56, 207
NspI RCATGY 1 cut(s) 56
PciI ACATGT 1 cut(s) 52
PdmI GAANNNNTTC 1 cut(s) 71
PkrI GCNGC 2 cut(s) 169, 397
PscI ACATGT 1 cut(s) 52
RsaI GTAC 1 cut(s) 312
RsaNI GTAC 1 cut(s) 311
SaqAI TTAA 2 cut(s) 114, 303
SatI GCNGC 2 cut(s) 168, 396
ScaI AGTACT 1 cut(s) 312
SetI ASST 8 cut(s) 22, 72, 84, 100, 114, 169, 327, 391
SfaNI GCATC 1 cut(s) 129
SmlI CTYRAG 3 cut(s) 83, 113, 125
SmoI CTYRAG 3 cut(s) 83, 113, 125
Sse9I AATT 3 cut(s) 35, 194, 281
SspMI CTAG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 319
TasI AATT 3 cut(s) 35, 194, 281
TatI WGTACW 1 cut(s) 310
Tru1I TTAA 2 cut(s) 114, 303
Tru9I TTAA 2 cut(s) 114, 303
TseI GCWGC 2 cut(s) 167, 395
TspDTI ATGAA 2 cut(s) 207, 345
Vha464I CTTAAG 1 cut(s) 113
XceI RCATGY 1 cut(s) 56
XmnI GAANNNNTTC 1 cut(s) 71
XspI CTAG 1 cut(s) 291
ZrmI AGTACT 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.