Prupe.7G076300_v2.0.a1

zinc finger CCCH domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
OG0001285
Physical Location & Seq
Forward (+)
11303720 .. 11307489
3770 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G076300.2

Sequence Viewer

Length: 894 bp
ATGATGGATACTCGTAAAAGAGGGCGGCATGAAGCTGGTGCCTTCCATGCTAATGGTGGCTTCAAGAAGAACAAGCAAGAATTGGAGTCCTTTTCAACTGGTGTAGGAAGCAAATCGAAGCCATGCACCAAGTTTTTCAGCACTGCTGGCTGTCCTTTTGGCGAGAGTTGCCACTTCCTGCACTATGTTCCTGGTGGTTATAATGCTGTGGCTCAGATGATGAATCTTGCGCCTGCTCCTCAAGCATCTAGGAACATTGCTCCCCCACCATCCAATTCAAATGGATCCAGTTCATCTGCAGTTAAATCGCGCTTATGCAATAAATATAATTCTGCTGAAGGCTGCAAATTCGGTGACAAATGCCATTTTGCACATGGTGAGTGGGAACTTGGCAAGCATCTTGCTCAGTCCCACGATGATCCCCGTGCCATGGGACCTGGTCCAGGCCGCATGACCAATTGGATGGAGCCACCCCTTGCAGGCCCTGCATCTAGCTTTGGTGCCTCGTCCACTGCCAAAATCAGTGTAGATGCTTCGCTTGCAGGAGCCATTATTGGGAAGGGTGGTGTAAATTCGAAGCAGATTTGTCGCCAGACAGGTGCCAAGCTTTCAATCCGGGAGCATGAGTCAGATCCCAATCTCAGGAACATTGAACTAGAGGGGACCTTTGAACAGATTCAGCAAGCAAGTGCCATGGTGAGAGAGCTAATTGTGACTGTTTCAATGTCTGGCCCTGCAAAAACTCCTGGAGGAGGAGCTCCAGGGGCCCCGGCCCCTCCTGGAAGTAACTATAAGACAAAGCTATGCGATAATTTTACCAAAGGGACTTGCACCTTCGGAGATAGATGTCACTTTGCACACGGGGCTGCTGAATTGCGGAAGTCTGGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
KH_1 zf-CCCH zf-CCCH_2

Protein Analysis

298

Amino Acids

31.29

Weight (kDa)

9.24

Isoelectric Point (pI)

43.15

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 201
AccB1I GGYRCC 3 cut(s) 38, 500, 599
AccII CGCG 1 cut(s) 310
AciI CCGC 3 cut(s) 25, 448, 877
AclWI GGATC 4 cut(s) 279, 292, 413, 626
AcsI RAATTY 2 cut(s) 347, 571
AcuI CTGAAG 1 cut(s) 357
AdeI CACNNNGTG 1 cut(s) 377
AfiI CCNNNNNNNGG 6 cut(s) 430, 443, 479, 555, 642, 752
AgsI TTSAA 7 cut(s) 64, 96, 279, 612, 653, 671, 723
AjnI CCWGG 6 cut(s) 190, 436, 442, 745, 760, 778
AluBI AGCT 6 cut(s) 35, 495, 607, 706, 758, 802
AluI AGCT 6 cut(s) 35, 495, 607, 706, 758, 802
Alw21I GWGCWC 1 cut(s) 760
AlwI GGATC 4 cut(s) 279, 292, 413, 626
AlwNI CAGNNNCTG 1 cut(s) 485
AoxI GGCC 5 cut(s) 445, 481, 730, 765, 771
ApaI GGGCCC 1 cut(s) 769
ApeKI GCWGC 2 cut(s) 342, 866
ApoI RAATTY 2 cut(s) 347, 571
Asp700I GAANNNNTTC 1 cut(s) 675
AspLEI GCGC 2 cut(s) 232, 312
AspS9I GGNCC 8 cut(s) 434, 440, 482, 663, 731, 765, 766, 772
AsuC2I CCSGG 2 cut(s) 617, 770
AsuHPI GGTGA 3 cut(s) 365, 389, 709
AsuII TTCGAA 1 cut(s) 575
AvaII GGWCC 3 cut(s) 434, 440, 663
BaeGI GKGCMC 1 cut(s) 769
BamHI GGATCC 1 cut(s) 284
BanI GGYRCC 3 cut(s) 38, 500, 599
BanII GRGCYC 2 cut(s) 760, 769
Bbv12I GWGCWC 1 cut(s) 760
BbvI GCAGC 2 cut(s) 329, 853
BccI CCATC 2 cut(s) 277, 457
BcgI CGANNNNNNTGC 4 cut(s) 288, 322, 569, 603
BciT130I CCWGG 6 cut(s) 192, 438, 444, 747, 762, 780
BcnI CCSGG 2 cut(s) 617, 770
BfaI CTAG 3 cut(s) 249, 492, 656
BfmI CTRYAG 1 cut(s) 297
BisI GCNGC 4 cut(s) 26, 343, 448, 867
BlsI GCNGC 4 cut(s) 27, 344, 449, 868
Bme1390I CCNGG 8 cut(s) 192, 438, 444, 617, 747, 762, 770, 780
Bme18I GGWCC 3 cut(s) 434, 440, 663
BmgT120I GGNCC 8 cut(s) 434, 440, 482, 663, 731, 765, 766, 772
BmrFI CCNGG 8 cut(s) 192, 438, 444, 617, 747, 762, 770, 780
BmsI GCATC 4 cut(s) 254, 406, 497, 520
BpmI CTGGAG 2 cut(s) 744, 768
Bpu14I TTCGAA 1 cut(s) 575
BpuEI CTTGAG 1 cut(s) 225
BpuMI CCSGG 2 cut(s) 617, 770
BsaBI GATNNNNATC 1 cut(s) 636
BsaJI CCNNGG 4 cut(s) 429, 693, 761, 768
BsaXI ACNNNNNCTCC 2 cut(s) 611, 641
Bsc4I CCNNNNNNNGG 6 cut(s) 430, 443, 479, 555, 642, 752
Bse1I ACTGG 2 cut(s) 103, 288
Bse3DI GCAATG 1 cut(s) 255
Bse8I GATNNNNATC 1 cut(s) 636
BseBI CCWGG 6 cut(s) 192, 438, 444, 747, 762, 780
BseDI CCNNGG 4 cut(s) 429, 693, 761, 768
BseGI GGATG 3 cut(s) 269, 468, 894
BseJI GATNNNNATC 1 cut(s) 636
BseLI CCNNNNNNNGG 6 cut(s) 430, 443, 479, 555, 642, 752
BseMI GCAATG 1 cut(s) 255
BseMII CTCAG 3 cut(s) 227, 419, 655
BseNI ACTGG 2 cut(s) 103, 288
BseRI GAGGAG 3 cut(s) 228, 765, 768
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 2 cut(s) 329, 853
BsgI GTGCAG 1 cut(s) 164
Bsh1236I CGCG 1 cut(s) 310
BshFI GGCC 5 cut(s) 447, 483, 732, 767, 773
BshNI GGYRCC 3 cut(s) 38, 500, 599
BsiHKAI GWGCWC 1 cut(s) 760
BsiSI CCGG 2 cut(s) 616, 770
BslFI GGGAC 4 cut(s) 394, 447, 676, 838
BslI CCNNNNNNNGG 6 cut(s) 430, 443, 479, 555, 642, 752
BsmFI GGGAC 4 cut(s) 394, 447, 676, 838
BsnI GGCC 5 cut(s) 447, 483, 732, 767, 773
Bsp119I TTCGAA 1 cut(s) 575
Bsp120I GGGCCC 1 cut(s) 765
Bsp1286I GDGCHC 2 cut(s) 760, 769
Bsp143I GATC 3 cut(s) 284, 418, 631
Bsp19I CCATGG 2 cut(s) 429, 693
BspACI CCGC 3 cut(s) 25, 448, 877
BspANI GGCC 5 cut(s) 447, 483, 732, 767, 773
BspCNI CTCAG 3 cut(s) 226, 418, 654
BspFNI CGCG 1 cut(s) 310
BspMAI CTGCAG 1 cut(s) 301
BspPI GGATC 4 cut(s) 279, 292, 413, 626
BspT104I TTCGAA 1 cut(s) 575
BspT107I GGYRCC 3 cut(s) 38, 500, 599
BsrDI GCAATG 1 cut(s) 255
BsrI ACTGG 2 cut(s) 103, 288
BssECI CCNNGG 4 cut(s) 429, 693, 761, 768
BssMI GATC 3 cut(s) 284, 418, 631
BssT1I CCWWGG 2 cut(s) 429, 693
Bst2UI CCWGG 6 cut(s) 192, 438, 444, 747, 762, 780
Bst4CI ACNGT 1 cut(s) 718
BstAPI GCANNNNNTGC 1 cut(s) 485
BstBI TTCGAA 1 cut(s) 575
BstC8I GCNNGC 6 cut(s) 148, 234, 395, 481, 540, 684
BstDEI CTNAG 3 cut(s) 213, 405, 641
BstDSI CCRYGG 2 cut(s) 429, 693
BstENI CCTNNNNNAGG 2 cut(s) 441, 750
BstF5I GGATG 3 cut(s) 269, 468, 894
BstFNI CGCG 1 cut(s) 310
BstHHI GCGC 2 cut(s) 232, 312
BstKTI GATC 3 cut(s) 287, 421, 634
BstMBI GATC 3 cut(s) 284, 418, 631
BstMWI GCNNNNNNNGC 8 cut(s) 47, 147, 168, 242, 485, 539, 764, 863
BstNI CCWGG 6 cut(s) 192, 438, 444, 747, 762, 780
BstSCI CCNGG 8 cut(s) 190, 436, 442, 615, 745, 760, 768, 778
BstSFI CTRYAG 1 cut(s) 297
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 1 cut(s) 310
BstV1I GCAGC 2 cut(s) 329, 853
BstX2I RGATCY 2 cut(s) 284, 631
BstXI CCANNNNNNTGG 2 cut(s) 53, 463
BstYI RGATCY 2 cut(s) 284, 631
BsuRI GGCC 5 cut(s) 447, 483, 732, 767, 773
BtgI CCRYGG 2 cut(s) 429, 693
BtsCI GGATG 3 cut(s) 269, 468, 894
BtsI GCAGTG 2 cut(s) 141, 510
BtsIMutI CAGTG 3 cut(s) 141, 510, 529
Cac8I GCNNGC 6 cut(s) 148, 234, 395, 481, 540, 684
CaiI CAGNNNCTG 1 cut(s) 485
CfoI GCGC 2 cut(s) 232, 312
Cfr13I GGNCC 8 cut(s) 434, 440, 482, 663, 731, 765, 766, 772
CsiI ACCWGGT 1 cut(s) 436
CviAII CATG 8 cut(s) 29, 47, 123, 374, 430, 451, 623, 694
DdeI CTNAG 3 cut(s) 213, 405, 641
DpnI GATC 3 cut(s) 286, 420, 633
DpnII GATC 3 cut(s) 284, 418, 631
DraIII CACNNNGTG 1 cut(s) 377
Ecl136II GAGCTC 1 cut(s) 758
Eco130I CCWWGG 2 cut(s) 429, 693
Eco24I GRGCYC 2 cut(s) 760, 769
Eco47I GGWCC 3 cut(s) 434, 440, 663
Eco53kI GAGCTC 1 cut(s) 758
Eco57I CTGAAG 1 cut(s) 357
EcoICRI GAGCTC 1 cut(s) 758
EcoNI CCTNNNNNAGG 2 cut(s) 441, 750
EcoO109I RGGNCCY 5 cut(s) 434, 482, 663, 765, 766
EcoRII CCWGG 6 cut(s) 190, 436, 442, 745, 760, 778
EcoT14I CCWWGG 2 cut(s) 429, 693
EcoT38I GRGCYC 2 cut(s) 760, 769
ErhI CCWWGG 2 cut(s) 429, 693
FaeI CATG 8 cut(s) 32, 50, 126, 377, 433, 454, 626, 697
FaqI GGGAC 4 cut(s) 394, 447, 676, 838
FatI CATG 8 cut(s) 28, 46, 122, 373, 429, 450, 622, 693
Fnu4HI GCNGC 4 cut(s) 26, 343, 448, 867
FokI GGATG 2 cut(s) 256, 475
FriOI GRGCYC 2 cut(s) 760, 769
Fsp4HI GCNGC 4 cut(s) 26, 343, 448, 867
FspBI CTAG 3 cut(s) 249, 492, 656
GlaI GCGC 2 cut(s) 231, 311
GluI GCNGC 4 cut(s) 26, 343, 448, 867
GsuI CTGGAG 2 cut(s) 744, 768
HaeIII GGCC 5 cut(s) 447, 483, 732, 767, 773
HapII CCGG 2 cut(s) 616, 770
HhaI GCGC 2 cut(s) 232, 312
Hin1II CATG 8 cut(s) 32, 50, 126, 377, 433, 454, 626, 697
Hin6I GCGC 2 cut(s) 230, 310
HinP1I GCGC 2 cut(s) 230, 310
HindIII AAGCTT 1 cut(s) 605
HinfI GANTC 4 cut(s) 86, 223, 626, 676
HpaII CCGG 2 cut(s) 616, 770
HphI GGTGA 3 cut(s) 365, 389, 709
Hpy166II GTNNAC 1 cut(s) 510
Hpy188I TCNGA 3 cut(s) 216, 631, 839
Hpy188III TCNNGA 2 cut(s) 64, 643
Hpy8I GTNNAC 1 cut(s) 510
HpyAV CCTTC 4 cut(s) 52, 332, 553, 844
HpyCH4III ACNGT 1 cut(s) 718
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 147, 168, 242, 485, 539, 764, 863
HpyF3I CTNAG 3 cut(s) 213, 405, 641
Hsp92II CATG 8 cut(s) 32, 50, 126, 377, 433, 454, 626, 697
HspAI GCGC 2 cut(s) 230, 310
Kzo9I GATC 3 cut(s) 284, 418, 631
LmnI GCTCC 7 cut(s) 241, 265, 466, 545, 619, 755, 763
Lsp1109I GCAGC 2 cut(s) 329, 853
LweI GCATC 4 cut(s) 254, 406, 497, 520
MabI ACCWGGT 1 cut(s) 436
MaeI CTAG 3 cut(s) 249, 492, 656
MaeIII GTNAC 4 cut(s) 353, 712, 785, 848
MalI GATC 3 cut(s) 286, 420, 633
MboI GATC 3 cut(s) 284, 418, 631
MboII GAAGA 1 cut(s) 79
MfeI CAATTG 1 cut(s) 457
MflI RGATCY 2 cut(s) 284, 631
MhlI GDGCHC 2 cut(s) 760, 769
MluCI AATT 9 cut(s) 80, 274, 328, 347, 457, 571, 708, 811, 872
MlyI GAGTC 2 cut(s) 95, 635
MnlI CCTC 7 cut(s) 14, 249, 514, 652, 743, 746, 786
MroXI GAANNNNTTC 1 cut(s) 675
MseI TTAA 1 cut(s) 303
MslI CAYNNNNRTG 1 cut(s) 51
MspI CCGG 2 cut(s) 616, 770
MspR9I CCNGG 8 cut(s) 192, 438, 444, 617, 747, 762, 770, 780
MunI CAATTG 1 cut(s) 457
MvaI CCWGG 6 cut(s) 192, 438, 444, 747, 762, 780
MvnI CGCG 1 cut(s) 310
MwoI GCNNNNNNNGC 8 cut(s) 47, 147, 168, 242, 485, 539, 764, 863
NciI CCSGG 2 cut(s) 617, 770
NcoI CCATGG 2 cut(s) 429, 693
NdeII GATC 3 cut(s) 284, 418, 631
NlaIII CATG 8 cut(s) 32, 50, 126, 377, 433, 454, 626, 697
NmuCI GTSAC 3 cut(s) 353, 712, 848
NspV TTCGAA 1 cut(s) 575
PdmI GAANNNNTTC 1 cut(s) 675
PfeI GAWTC 2 cut(s) 223, 676
PflFI GACNNNGTC 1 cut(s) 438
PfoI TCCNGGA 3 cut(s) 615, 745, 778
PkrI GCNGC 4 cut(s) 27, 344, 449, 868
PleI GAGTC 2 cut(s) 94, 634
PpsI GAGTC 2 cut(s) 94, 634
PpuMI RGGWCCY 2 cut(s) 434, 663
PsiI TTATAA 1 cut(s) 201
Psp124BI GAGCTC 1 cut(s) 760
Psp5II RGGWCCY 2 cut(s) 434, 663
Psp6I CCWGG 6 cut(s) 190, 436, 442, 745, 760, 778
PspGI CCWGG 6 cut(s) 190, 436, 442, 745, 760, 778
PspOMI GGGCCC 1 cut(s) 765
PspPI GGNCC 8 cut(s) 434, 440, 482, 663, 731, 765, 766, 772
PspPPI RGGWCCY 2 cut(s) 434, 663
PstI CTGCAG 1 cut(s) 301
PstNI CAGNNNCTG 1 cut(s) 485
PsuI RGATCY 2 cut(s) 284, 631
PsyI GACNNNGTC 1 cut(s) 438
RseI CAYNNNNRTG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 760
SaqAI TTAA 1 cut(s) 303
SatI GCNGC 4 cut(s) 26, 343, 448, 867
Sau3AI GATC 3 cut(s) 284, 418, 631
Sau96I GGNCC 8 cut(s) 434, 440, 482, 663, 731, 765, 766, 772
SchI GAGTC 2 cut(s) 95, 635
ScrFI CCNGG 8 cut(s) 192, 438, 444, 617, 747, 762, 770, 780
SduI GDGCHC 2 cut(s) 760, 769
SexAI ACCWGGT 1 cut(s) 436
SfaNI GCATC 4 cut(s) 254, 406, 497, 520
SfcI CTRYAG 1 cut(s) 297
SfuI TTCGAA 1 cut(s) 575
SinI GGWCC 3 cut(s) 434, 440, 663
SmiMI CAYNNNNRTG 1 cut(s) 51
SmlI CTYRAG 1 cut(s) 240
SmoI CTYRAG 1 cut(s) 240
Sse9I AATT 9 cut(s) 80, 274, 328, 347, 457, 571, 708, 811, 872
SsiI CCGC 3 cut(s) 25, 448, 877
SspMI CTAG 3 cut(s) 249, 492, 656
SstI GAGCTC 1 cut(s) 760
StyD4I CCNGG 8 cut(s) 190, 436, 442, 615, 745, 760, 768, 778
StyI CCWWGG 2 cut(s) 429, 693
TaaI ACNGT 1 cut(s) 718
TaqI TCGA 2 cut(s) 116, 575
TasI AATT 9 cut(s) 80, 274, 328, 347, 457, 571, 708, 811, 872
TauI GCSGC 2 cut(s) 28, 450
TfiI GAWTC 2 cut(s) 223, 676
Tru1I TTAA 1 cut(s) 303
Tru9I TTAA 1 cut(s) 303
TscAI CASTG 3 cut(s) 148, 517, 529
TseFI GTSAC 3 cut(s) 353, 712, 848
TseI GCWGC 2 cut(s) 342, 866
Tsp45I GTSAC 3 cut(s) 353, 712, 848
TspDTI ATGAA 3 cut(s) 45, 236, 282
TspRI CASTG 3 cut(s) 148, 517, 529
Tth111I GACNNNGTC 1 cut(s) 438
VpaK11BI GGWCC 3 cut(s) 434, 440, 663
XagI CCTNNNNNAGG 2 cut(s) 441, 750
XapI RAATTY 2 cut(s) 347, 571
XcmI CCANNNNNNNNNTGG 2 cut(s) 53, 371
XmnI GAANNNNTTC 1 cut(s) 675
XspI CTAG 3 cut(s) 249, 492, 656
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.