Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002059

Physical Location & Seq

Genomic Coordinates Reverse (-)

13067626 .. 13068582

Gene Structure 957 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G32050.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGAGCACCAAATTCTCAGTCAAAGAGACAATGACGATGGTGACACTTTGGATACTAACAATCTTACACAAGAAGAAATTGATGCCATTTACCAAGGGGAAGTTCTAGTGAAGAAAGGCAAGAAATTTGGCTATGGTTCAATTCCGGTAGCTGATCCTACTGTTGATGCATCTCCAAATTATGAAAAAATGTATCTTGCGACTCAAGAAAAGCTCCAGAAATCGGACCAAGTGATTGAGGGAATGCTGCTGAAGTTTAAAGATGTTGATTTTTGGATTACTATGATGCAGAACAAATTTGCAAATGAAGTTCCACCTTCCATGAGAGCAACAGTGAACACCAATGGTGGACTAGGGTGGTTTTGCACATCTATAAATGGAGGAGCGTCAACCATGGGAGCTGCAAACTTGCGTAGAAGTCTATCGCCTCTCCATACAGAGGTCGAAGCTCTTCTATGGGTAATGAAGTGTATGATTGGTGCCGATAACCAAGAAGTAGCTTTTTCACAGACTGTTCAGACCTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4283

Protein Analysis

175

Amino Acids

19.43

Weight (kDa)

4.71

Isoelectric Point (pI)

33.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002059)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G05570 AT1G05570 AT1G05570 AT1G05570 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT2G31960 AT3G32050 AT5G36870 AT5G36870 AT5G36870 AT5G36870 AT5G36870
fragaria_vesca	FvH4_7g00110 FvH4_7g00110
malus_domestica	MD02G1319100.v1.1 MD07G1001800.v1.1
prunus_persica	Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1 Prupe.2G003400_v2.0.a1
pyrus_communis	pycom02g26730 pycom07g00210
rosa_chinensis	RchiOBHm_Chr1g0313311 RchiOBHm_Chr1g0313331 RchiOBHm_Chr1g0313341
rosa_laevigata	RLG00000030802 RLG00000030803 RLG00000030805 RLG00000030806
rosa_multiflora	Rmu_co8187780.1_g000001 Rmu_sc0000035.1_g000021
rosa_roxburghii	Rroxscaffold_4G00332260
rosa_rugosa	RorugPtG0003800.1 RorugPtG0003900 RorugPtG0004000.1
rosa_samantha	Rh1AG002600 Rh1CG001700 Rh1CG007400 Rh1DG002500
rosa_wichuraiana	Rw1G000170 Rw1G000180

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AclWI	GGATC	1 cut(s)	149
AcsI	RAATTY	3 cut(s)	12, 125, 296
AcuI	CTGAAG	1 cut(s)	272
AfiI	CCNNNNNNNGG	2 cut(s)	223, 439
AgsI	TTSAA	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	5 cut(s)	152, 214, 401, 449, 500
AluI	AGCT	5 cut(s)	152, 214, 401, 449, 500
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	1 cut(s)	21
AlwI	GGATC	1 cut(s)	149
ApeKI	GCWGC	2 cut(s)	247, 401
ApoI	RAATTY	3 cut(s)	12, 125, 296
ArsI	GACNNNNNNTTYG	1 cut(s)	36
Asp700I	GAANNNNTTC	1 cut(s)	450
AspS9I	GGNCC	1 cut(s)	226
AsuHPI	GGTGA	1 cut(s)	53
AvaII	GGWCC	1 cut(s)	226
BanI	GGYRCC	1 cut(s)	479
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	234, 388
BccI	CCATC	1 cut(s)	32
BciVI	GTATCC	1 cut(s)	46
BcoDI	GTCTC	1 cut(s)	21
BfaI	CTAG	2 cut(s)	107, 353
BfuI	GTATCC	1 cut(s)	46
BisI	GCNGC	2 cut(s)	248, 402
BlsI	GCNGC	2 cut(s)	249, 403
Bme18I	GGWCC	1 cut(s)	226
BmgT120I	GGNCC	1 cut(s)	226
BmiI	GGNNCC	1 cut(s)	481
BmsI	GCATC	4 cut(s)	73, 157, 179, 276
BpmI	CTGGAG	1 cut(s)	200
BpuEI	CTTGAG	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	94, 393
BsaWI	WCCGGW	1 cut(s)	145
Bsc4I	CCNNNNNNNGG	2 cut(s)	223, 439
BseDI	CCNNGG	2 cut(s)	94, 393
BseLI	CCNNNNNNNGG	2 cut(s)	223, 439
BseMII	CTCAG	1 cut(s)	31
BseRI	GAGGAG	1 cut(s)	396
BseXI	GCAGC	2 cut(s)	234, 388
BshNI	GGYRCC	1 cut(s)	479
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	1 cut(s)	146
BslI	CCNNNNNNNGG	2 cut(s)	223, 439
BsmAI	GTCTC	1 cut(s)	21
BsmI	GAATGC	1 cut(s)	249
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp143I	GATC	1 cut(s)	154
Bsp19I	CCATGG	1 cut(s)	393
BspCNI	CTCAG	1 cut(s)	30
BspLI	GGNNCC	1 cut(s)	481
BspPI	GGATC	1 cut(s)	149
BspQI	GCTCTTC	1 cut(s)	456
BspT107I	GGYRCC	1 cut(s)	479
BssECI	CCNNGG	2 cut(s)	94, 393
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	2 cut(s)	94, 393
Bst4CI	ACNGT	3 cut(s)	163, 334, 514
Bst6I	CTCTTC	1 cut(s)	456
BstDEI	CTNAG	1 cut(s)	17
BstDSI	CCRYGG	1 cut(s)	393
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	21
BstMBI	GATC	1 cut(s)	154
BstV1I	GCAGC	2 cut(s)	234, 388
BsuI	GTATCC	1 cut(s)	46
BtgI	CCRYGG	1 cut(s)	393
BtsIMutI	CAGTG	1 cut(s)	339
Cfr13I	GGNCC	1 cut(s)	226
CseI	GACGC	1 cut(s)	375
CviAII	CATG	2 cut(s)	322, 394
CviJI	RGCY	6 cut(s)	132, 152, 214, 401, 449, 500
CviKI_1	RGCY	6 cut(s)	132, 152, 214, 401, 449, 500
DdeI	CTNAG	1 cut(s)	17
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
DraI	TTTAAA	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	456
EarI	CTCTTC	1 cut(s)	456
Eco130I	CCWWGG	2 cut(s)	94, 393
Eco47I	GGWCC	1 cut(s)	226
Eco57I	CTGAAG	1 cut(s)	272
EcoT14I	CCWWGG	2 cut(s)	94, 393
EcoT22I	ATGCAT	1 cut(s)	172
ErhI	CCWWGG	2 cut(s)	94, 393
FaeI	CATG	2 cut(s)	325, 397
FaiI	YATR	9 cut(s)	135, 183, 284, 323, 374, 395, 435, 457, 473
FatI	CATG	2 cut(s)	321, 393
Fnu4HI	GCNGC	2 cut(s)	248, 402
Fsp4HI	GCNGC	2 cut(s)	248, 402
FspBI	CTAG	2 cut(s)	107, 353
GluI	GCNGC	2 cut(s)	248, 402
GsuI	CTGGAG	1 cut(s)	200
HapII	CCGG	1 cut(s)	146
HgaI	GACGC	1 cut(s)	375
Hin1II	CATG	2 cut(s)	325, 397
HincII	GTYRAC	1 cut(s)	390
HindII	GTYRAC	1 cut(s)	390
HinfI	GANTC	1 cut(s)	202
HpaII	CCGG	1 cut(s)	146
HphI	GGTGA	1 cut(s)	53
Hpy166II	GTNNAC	3 cut(s)	337, 350, 390
Hpy188I	TCNGA	2 cut(s)	226, 519
Hpy188III	TCNNGA	2 cut(s)	206, 217
Hpy8I	GTNNAC	3 cut(s)	337, 350, 390
HpyAV	CCTTC	1 cut(s)	327
HpyCH4III	ACNGT	3 cut(s)	163, 334, 514
HpyCH4V	TGCA	5 cut(s)	170, 289, 302, 366, 404
HpyF3I	CTNAG	1 cut(s)	17
Hsp92II	CATG	2 cut(s)	325, 397
Kzo9I	GATC	1 cut(s)	154
LguI	GCTCTTC	1 cut(s)	456
LmnI	GCTCC	4 cut(s)	4, 219, 383, 398
LpnPI	CCDG	2 cut(s)	159, 230
Lsp1109I	GCAGC	2 cut(s)	234, 388
LweI	GCATC	4 cut(s)	73, 157, 179, 276
MaeI	CTAG	2 cut(s)	107, 353
MaeIII	GTNAC	1 cut(s)	41
MalI	GATC	1 cut(s)	156
MboI	GATC	1 cut(s)	154
MboII	GAAGA	3 cut(s)	86, 124, 443
MhlI	GDGCHC	1 cut(s)	9
MluCI	AATT	6 cut(s)	12, 78, 125, 141, 178, 296
MlyI	GAGTC	1 cut(s)	196
MnlI	CCTC	4 cut(s)	232, 374, 433, 438
Mph1103I	ATGCAT	1 cut(s)	172
MroXI	GAANNNNTTC	1 cut(s)	450
MseI	TTAA	1 cut(s)	258
MspI	CCGG	1 cut(s)	146
Mva1269I	GAATGC	1 cut(s)	249
NcoI	CCATGG	1 cut(s)	393
NdeII	GATC	1 cut(s)	154
NlaIII	CATG	2 cut(s)	325, 397
NlaIV	GGNNCC	1 cut(s)	481
NmuCI	GTSAC	1 cut(s)	41
NsiI	ATGCAT	1 cut(s)	172
PciSI	GCTCTTC	1 cut(s)	456
PctI	GAATGC	1 cut(s)	249
PdmI	GAANNNNTTC	1 cut(s)	450
PkrI	GCNGC	2 cut(s)	249, 403
PleI	GAGTC	1 cut(s)	196
PpsI	GAGTC	1 cut(s)	196
PspN4I	GGNNCC	1 cut(s)	481
PspPI	GGNCC	1 cut(s)	226
SapI	GCTCTTC	1 cut(s)	456
SaqAI	TTAA	1 cut(s)	258
SatI	GCNGC	2 cut(s)	248, 402
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	226
SchI	GAGTC	1 cut(s)	196
SduI	GDGCHC	1 cut(s)	9
SetI	ASST	8 cut(s)	154, 216, 319, 403, 444, 451, 502, 524
SfaNI	GCATC	4 cut(s)	73, 157, 179, 276
SinI	GGWCC	1 cut(s)	226
SmlI	CTYRAG	1 cut(s)	204
SmoI	CTYRAG	1 cut(s)	204
Sse9I	AATT	6 cut(s)	12, 78, 125, 141, 178, 296
SspMI	CTAG	2 cut(s)	107, 353
StyI	CCWWGG	2 cut(s)	94, 393
TaaI	ACNGT	3 cut(s)	163, 334, 514
TaqI	TCGA	1 cut(s)	444
TasI	AATT	6 cut(s)	12, 78, 125, 141, 178, 296
Tru1I	TTAA	1 cut(s)	258
Tru9I	TTAA	1 cut(s)	258
TscAI	CASTG	1 cut(s)	339
TseFI	GTSAC	1 cut(s)	41
TseI	GCWGC	2 cut(s)	247, 401
Tsp45I	GTSAC	1 cut(s)	41
TspDTI	ATGAA	3 cut(s)	198, 321, 479
TspRI	CASTG	1 cut(s)	339
VpaK11BI	GGWCC	1 cut(s)	226
XapI	RAATTY	3 cut(s)	12, 125, 296
XmnI	GAANNNNTTC	1 cut(s)	450
XspI	CTAG	2 cut(s)	107, 353
Zsp2I	ATGCAT	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.