RLG00000030806

Callose synthase

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
67825637 .. 67839378
13742 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030806

Sequence Viewer

Length: 1401 bp
ATGGCATATAGAAGGGGCTCAGACCAGCAGCAACCGCAGAGGCGGATTCTGCAGACTCAGACTGCCGGAAGTTTTGGAGAGACGTTGGATAGTGAGGTTGTGCCTTCTTCTCTGGTTGATATTGTTCCTATTCTCCGTGTTGCAAATGAAGTCGAATCTAGGAATGCAAGGGTTGCCTATCTCTGTCGCTTCTTTGCATTTTGGAAAGCTGACAGACTAGATCCAGCATCTAGTGGCTGTGGTGTTCCCCAGTTTAAAACCGCATTTCTTCAACGTCTAGAGAGGGAAAATAAAACAACATTGGCAGGACAAGCAAAGAGTGATACTCGTGCAATGCAGAGTGTTTATCAAGTTTACTACAAAAAATACATTCAAGCTTTGCACAGTGCTGCTGATAAACCTGCTCGTGCACAACTGACAAAGGCATACAAAACTGCTGCTGTTTTGTATGAGGTTTTGAAGGCTGTCAATCAGACAGACTGTGTTGAACTCGCTGGACAGTTTTTGAAAGACCACACTGAGGTTGAAGAAAAACAACAGATATATCTACCTTACAATATTCTTCCTCTTGATCCTGATAGTCATCAGGCAATCATGAGATGTCCCGAGATTCATGCTACTGTTTCTGCACTCCGAAACACCAGAGGTTTACCCTGGTCAAAGGACTACAAAAAGAAAGAAGATGCAGACATTGTTGATTGGCTTCAAGCTATGTTTGGTTTTAAGAAGGATAATATCGCCAATCAAAGGGAGCACTTGATTCTTTTGATCGCTAGTGTTCACATATGTCAATTTCCAAAATCTGATCAGCATACAGCAGCGGAAATTACTATTCATGGGTTTATATCTTCTTATCTGGGGAGAGGCTGCCAACTTGAGATTCATATGGCATTTGAATTATATGGAATGCTAGCTGGGAGTGTTAGTCCAATGACGGGTGAGCACATAAAGCCAGCCTATGGTGGTGAAGAGGAGGCCTTTTTGGGCAAAGTTGTAACTCCAATATATAATACTATAGCACCGGAGGCTGAAAGGAGCAAAGGAGGAAAATCAAAGCATTCTCAATGGAGAAATTATGATGGCTTGAATGAATACTTTCGGACAGTTGATTGTTTTAAGCTAGGCTGGCCTATGCGTGCTGATGCTGATTTCTTTTACCAGCCTGGTAAAGAGCTTGAAGTTGACAGAGAAGAGGTGGAGAGTTCGAGGGCTAGGGAGGAGATGGAAAAGACTTTTGAGGAACAAGCAAACACAGCCAGTGGTATGGTGGGTGCAGTGGAGGAGGCAGCGGCAGGTGTGACTGGGAAGCGCCGGCTAGAGAGGAGGAGGAAGGGTCGAAGTTCAAGCGCACACGCCATGCACTTTCGCTGGCCCTTGGAAGGCTGGAAGAGGATAATTTAG
Functional Annotation

Protein Analysis

467

Amino Acids

52.82

Weight (kDa)

8.3

Isoelectric Point (pI)

45.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Vta1 PF04652 41 - 179 7.8e-13 Vta1 like
FKS1_dom1 PF14288 295 - 377 9.5e-16 1,3-beta-glucan synthase subunit FKS1, domain-1
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1283
Acc36I ACCTGC 2 cut(s) 409, 1283
AccB7I CCANNNNNTGG 1 cut(s) 959
AciI CCGC 5 cut(s) 35, 43, 261, 821, 1289
AclWI GGATC 2 cut(s) 215, 566
AfiI CCNNNNNNNGG 5 cut(s) 520, 747, 935, 959, 1379
AjnI CCWGG 2 cut(s) 653, 1162
AjuI GAANNNNNNNTTGG 2 cut(s) 864, 896
AluBI AGCT 6 cut(s) 209, 377, 710, 914, 1120, 1174
AluI AGCT 6 cut(s) 209, 377, 710, 914, 1120, 1174
Alw21I GWGCWC 3 cut(s) 412, 756, 945
Alw26I GTCTC 1 cut(s) 74
Alw44I GTGCAC 1 cut(s) 408
AlwI GGATC 2 cut(s) 215, 566
Ama87I CYCGRG 1 cut(s) 605
AoxI GGCC 3 cut(s) 975, 1127, 1370
ApaLI GTGCAC 1 cut(s) 408
ApeKI GCWGC 6 cut(s) 28, 389, 437, 818, 867, 1286
Asp700I GAANNNNTTC 1 cut(s) 1095
AspLEI GCGC 2 cut(s) 1311, 1349
AspS9I GGNCC 1 cut(s) 1371
AsuHPI GGTGA 2 cut(s) 950, 977
AsuNHI GCTAGC 1 cut(s) 910
AvaI CYCGRG 1 cut(s) 605
BaeGI GKGCMC 1 cut(s) 412
BanII GRGCYC 1 cut(s) 20
BauI CACGAG 2 cut(s) 327, 405
Bbv12I GWGCWC 3 cut(s) 412, 756, 945
BbvI GCAGC 6 cut(s) 40, 376, 424, 830, 854, 1298
BccI CCATC 2 cut(s) 1073, 1216
BcgI CGANNNNNNTGC 2 cut(s) 596, 630
BciT130I CCWGG 2 cut(s) 655, 1164
BclI TGATCA 1 cut(s) 805
BcoDI GTCTC 1 cut(s) 74
BfaI CTAG 9 cut(s) 159, 218, 231, 278, 774, 911, 1121, 1212, 1316
BfmI CTRYAG 2 cut(s) 50, 1014
BfoI RGCGCY 1 cut(s) 1312
BfuAI ACCTGC 2 cut(s) 409, 1283
BisI GCNGC 7 cut(s) 29, 390, 438, 819, 868, 1287, 1290
BlsI GCNGC 7 cut(s) 30, 391, 439, 820, 869, 1288, 1291
Bme1390I CCNGG 2 cut(s) 655, 1164
BmeT110I CYCGRG 1 cut(s) 605
BmgT120I GGNCC 1 cut(s) 1371
BmrFI CCNGG 2 cut(s) 655, 1164
BmrI ACTGGG 2 cut(s) 244, 1311
BmsI GCATC 3 cut(s) 236, 673, 1132
BmtI GCTAGC 1 cut(s) 914
BmuI ACTGGG 2 cut(s) 244, 1311
BplI GAGNNNNNCTC 2 cut(s) 310, 342
BpuEI CTTGAG 1 cut(s) 896
BsaBI GATNNNNATC 1 cut(s) 582
BsaJI CCNNGG 2 cut(s) 653, 1374
BsaWI WCCGGW 1 cut(s) 1021
BsaXI ACNNNNNCTCC 4 cut(s) 910, 940, 1318, 1348
Bsc4I CCNNNNNNNGG 5 cut(s) 520, 747, 935, 959, 1379
Bse118I RCCGGY 1 cut(s) 1311
Bse1I ACTGG 3 cut(s) 250, 1257, 1306
Bse3DI GCAATG 1 cut(s) 339
Bse8I GATNNNNATC 1 cut(s) 582
BseBI CCWGG 2 cut(s) 655, 1164
BseDI CCNNGG 2 cut(s) 653, 1374
BseJI GATNNNNATC 1 cut(s) 582
BseLI CCNNNNNNNGG 5 cut(s) 520, 747, 935, 959, 1379
BseMI GCAATG 1 cut(s) 339
BseMII CTCAG 3 cut(s) 33, 71, 510
BseNI ACTGG 3 cut(s) 250, 1257, 1306
BseRI GAGGAG 5 cut(s) 986, 1232, 1295, 1336, 1339
BseSI GKGCMC 1 cut(s) 412
BseXI GCAGC 6 cut(s) 40, 376, 424, 830, 854, 1298
BseYI CCCAGC 1 cut(s) 914
BsgI GTGCAG 2 cut(s) 612, 1293
BshFI GGCC 3 cut(s) 977, 1129, 1372
BsiHKAI GWGCWC 3 cut(s) 412, 756, 945
BsiHKCI CYCGRG 1 cut(s) 605
BsiSI CCGG 3 cut(s) 66, 1022, 1312
BslFI GGGAC 1 cut(s) 588
BslI CCNNNNNNNGG 5 cut(s) 520, 747, 935, 959, 1379
BsmAI GTCTC 1 cut(s) 74
BsmBI CGTCTC 1 cut(s) 74
BsmFI GGGAC 1 cut(s) 588
BsmI GAATGC 3 cut(s) 169, 912, 1057
BsnI GGCC 3 cut(s) 977, 1129, 1372
BsoBI CYCGRG 1 cut(s) 605
Bsp1286I GDGCHC 4 cut(s) 20, 412, 756, 945
Bsp143I GATC 4 cut(s) 220, 571, 768, 805
BspACI CCGC 5 cut(s) 35, 43, 261, 821, 1289
BspANI GGCC 3 cut(s) 977, 1129, 1372
BspCNI CTCAG 3 cut(s) 32, 70, 511
BspHI TCATGA 1 cut(s) 594
BspMAI CTGCAG 1 cut(s) 54
BspMI ACCTGC 2 cut(s) 409, 1283
BspOI GCTAGC 1 cut(s) 914
BspPI GGATC 2 cut(s) 215, 566
BsrDI GCAATG 1 cut(s) 339
BsrFI RCCGGY 1 cut(s) 1311
BsrI ACTGG 3 cut(s) 250, 1257, 1306
BssAI RCCGGY 1 cut(s) 1311
BssECI CCNNGG 2 cut(s) 653, 1374
BssMI GATC 4 cut(s) 220, 571, 768, 805
BssSI CACGAG 2 cut(s) 327, 405
BssT1I CCWWGG 1 cut(s) 1374
Bst2BI CACGAG 2 cut(s) 327, 405
Bst2UI CCWGG 2 cut(s) 655, 1164
Bst4CI ACNGT 5 cut(s) 386, 482, 501, 622, 1105
Bst6I CTCTTC 3 cut(s) 963, 1185, 1382
BstAPI GCANNNNNTGC 1 cut(s) 173
BstC8I GCNNGC 6 cut(s) 912, 954, 1127, 1137, 1313, 1370
BstDEI CTNAG 3 cut(s) 19, 57, 519
BstH2I RGCGCY 1 cut(s) 1312
BstHHI GCGC 2 cut(s) 1311, 1349
BstKTI GATC 4 cut(s) 223, 574, 771, 808
BstMAI GTCTC 1 cut(s) 74
BstMBI GATC 4 cut(s) 220, 571, 768, 805
BstMWI GCNNNNNNNGC 8 cut(s) 34, 49, 173, 311, 949, 1025, 1126, 1253
BstNI CCWGG 2 cut(s) 655, 1164
BstSCI CCNGG 2 cut(s) 653, 1162
BstSFI CTRYAG 2 cut(s) 50, 1014
BstSLI GKGCMC 1 cut(s) 412
BstV1I GCAGC 6 cut(s) 40, 376, 424, 830, 854, 1298
BstX2I RGATCY 1 cut(s) 220
BstXI CCANNNNNNTGG 1 cut(s) 1264
BstYI RGATCY 1 cut(s) 220
BsuRI GGCC 3 cut(s) 977, 1129, 1372
BtsI GCAGTG 1 cut(s) 1281
BtsIMutI CAGTG 4 cut(s) 391, 516, 1264, 1281
BveI ACCTGC 2 cut(s) 409, 1283
Cac8I GCNNGC 6 cut(s) 912, 954, 1127, 1137, 1313, 1370
CciI TCATGA 1 cut(s) 594
CfoI GCGC 2 cut(s) 1311, 1349
Cfr10I RCCGGY 1 cut(s) 1311
Cfr13I GGNCC 1 cut(s) 1371
CviAII CATG 4 cut(s) 595, 614, 836, 1357
DdeI CTNAG 3 cut(s) 19, 57, 519
DpnI GATC 4 cut(s) 222, 573, 770, 807
DpnII GATC 4 cut(s) 220, 571, 768, 805
DraI TTTAAA 1 cut(s) 256
Eam1104I CTCTTC 3 cut(s) 963, 1185, 1382
EarI CTCTTC 3 cut(s) 963, 1185, 1382
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 1 cut(s) 1374
Eco147I AGGCCT 1 cut(s) 977
Eco24I GRGCYC 1 cut(s) 20
Eco88I CYCGRG 1 cut(s) 605
EcoRII CCWGG 2 cut(s) 653, 1162
EcoT14I CCWWGG 1 cut(s) 1374
EcoT38I GRGCYC 1 cut(s) 20
ErhI CCWWGG 1 cut(s) 1374
Esp3I CGTCTC 1 cut(s) 74
FaeI CATG 4 cut(s) 598, 617, 839, 1360
FaqI GGGAC 1 cut(s) 588
FatI CATG 4 cut(s) 594, 613, 835, 1356
FauNDI CATATG 2 cut(s) 785, 885
FbaI TGATCA 1 cut(s) 805
Fnu4HI GCNGC 7 cut(s) 29, 390, 438, 819, 868, 1287, 1290
FriOI GRGCYC 1 cut(s) 20
Fsp4HI GCNGC 7 cut(s) 29, 390, 438, 819, 868, 1287, 1290
FspBI CTAG 9 cut(s) 159, 218, 231, 278, 774, 911, 1121, 1212, 1316
GlaI GCGC 2 cut(s) 1310, 1348
GluI GCNGC 7 cut(s) 29, 390, 438, 819, 868, 1287, 1290
GsaI CCCAGC 1 cut(s) 918
HaeII RGCGCY 1 cut(s) 1312
HaeIII GGCC 3 cut(s) 977, 1129, 1372
HapII CCGG 3 cut(s) 66, 1022, 1312
HhaI GCGC 2 cut(s) 1311, 1349
Hin1II CATG 4 cut(s) 598, 617, 839, 1360
Hin6I GCGC 2 cut(s) 1309, 1347
HinP1I GCGC 2 cut(s) 1309, 1347
HincII GTYRAC 1 cut(s) 1183
HindII GTYRAC 1 cut(s) 1183
HindIII AAGCTT 1 cut(s) 375
HinfI GANTC 6 cut(s) 46, 55, 155, 610, 760, 880
HpaII CCGG 3 cut(s) 66, 1022, 1312
HphI GGTGA 2 cut(s) 950, 977
Hpy166II GTNNAC 5 cut(s) 355, 410, 650, 781, 1183
Hpy188I TCNGA 6 cut(s) 22, 60, 474, 635, 805, 1101
Hpy188III TCNNGA 5 cut(s) 278, 569, 575, 595, 605
Hpy8I GTNNAC 5 cut(s) 355, 410, 650, 781, 1183
HpyAV CCTTC 6 cut(s) 6, 114, 454, 721, 1324, 1373
HpyCH4III ACNGT 5 cut(s) 386, 482, 501, 622, 1105
HpyCH4IV ACGT 2 cut(s) 83, 274
HpyF10VI GCNNNNNNNGC 8 cut(s) 34, 49, 173, 311, 949, 1025, 1126, 1253
HpyF3I CTNAG 3 cut(s) 19, 57, 519
HpySE526I ACGT 2 cut(s) 83, 274
Hsp92II CATG 4 cut(s) 598, 617, 839, 1360
HspAI GCGC 2 cut(s) 1309, 1347
KroI GCCGGC 1 cut(s) 1311
KroNI GCCGGC 1 cut(s) 1313
Ksp22I TGATCA 1 cut(s) 805
Kzo9I GATC 4 cut(s) 220, 571, 768, 805
LmnI GCTCC 2 cut(s) 751, 1035
Lsp1109I GCAGC 6 cut(s) 40, 376, 424, 830, 854, 1298
LweI GCATC 3 cut(s) 236, 673, 1132
MaeI CTAG 9 cut(s) 159, 218, 231, 278, 774, 911, 1121, 1212, 1316
MaeII ACGT 2 cut(s) 83, 274
MaeIII GTNAC 2 cut(s) 994, 1297
MalI GATC 4 cut(s) 222, 573, 770, 807
MboI GATC 4 cut(s) 220, 571, 768, 805
MboII GAAGA 9 cut(s) 99, 260, 539, 554, 692, 840, 980, 1202, 1399
MflI RGATCY 1 cut(s) 220
MhlI GDGCHC 4 cut(s) 20, 412, 756, 945
MluCI AATT 5 cut(s) 791, 825, 896, 1072, 1395
MlyI GAGTC 1 cut(s) 49
MmeI TCCRAC 1 cut(s) 66
MroNI GCCGGC 1 cut(s) 1311
MroXI GAANNNNTTC 1 cut(s) 1095
MseI TTAA 3 cut(s) 255, 723, 1116
MspA1I CMGCKG 2 cut(s) 821, 1289
MspI CCGG 3 cut(s) 66, 1022, 1312
MspR9I CCNGG 2 cut(s) 655, 1164
Mva1269I GAATGC 3 cut(s) 169, 912, 1057
MvaI CCWGG 2 cut(s) 655, 1164
MwoI GCNNNNNNNGC 8 cut(s) 34, 49, 173, 311, 949, 1025, 1126, 1253
NaeI GCCGGC 1 cut(s) 1313
NdeI CATATG 2 cut(s) 785, 885
NdeII GATC 4 cut(s) 220, 571, 768, 805
NgoMIV GCCGGC 1 cut(s) 1311
NheI GCTAGC 1 cut(s) 910
NlaIII CATG 4 cut(s) 598, 617, 839, 1360
NmuCI GTSAC 1 cut(s) 1297
PagI TCATGA 1 cut(s) 594
PaqCI CACCTGC 1 cut(s) 1283
PceI AGGCCT 1 cut(s) 977
PctI GAATGC 3 cut(s) 169, 912, 1057
PdiI GCCGGC 1 cut(s) 1313
PdmI GAANNNNTTC 1 cut(s) 1095
PfeI GAWTC 5 cut(s) 46, 155, 610, 760, 880
PflMI CCANNNNNTGG 1 cut(s) 959
PkrI GCNGC 7 cut(s) 30, 391, 439, 820, 869, 1288, 1291
PleI GAGTC 1 cut(s) 49
PpsI GAGTC 1 cut(s) 49
Psp6I CCWGG 2 cut(s) 653, 1162
PspFI CCCAGC 1 cut(s) 914
PspGI CCWGG 2 cut(s) 653, 1162
PspPI GGNCC 1 cut(s) 1371
PstI CTGCAG 1 cut(s) 54
PsuI RGATCY 1 cut(s) 220
SaqAI TTAA 3 cut(s) 255, 723, 1116
SatI GCNGC 7 cut(s) 29, 390, 438, 819, 868, 1287, 1290
Sau3AI GATC 4 cut(s) 220, 571, 768, 805
Sau96I GGNCC 1 cut(s) 1371
SchI GAGTC 1 cut(s) 49
ScrFI CCNGG 2 cut(s) 655, 1164
SduI GDGCHC 4 cut(s) 20, 412, 756, 945
SfaNI GCATC 3 cut(s) 236, 673, 1132
SfcI CTRYAG 2 cut(s) 50, 1014
SmlI CTYRAG 1 cut(s) 875
SmoI CTYRAG 1 cut(s) 875
Sse9I AATT 5 cut(s) 791, 825, 896, 1072, 1395
SseBI AGGCCT 1 cut(s) 977
SsiI CCGC 5 cut(s) 35, 43, 261, 821, 1289
SspI AATATT 1 cut(s) 559
SspMI CTAG 9 cut(s) 159, 218, 231, 278, 774, 911, 1121, 1212, 1316
StuI AGGCCT 1 cut(s) 977
StyD4I CCNGG 2 cut(s) 653, 1162
StyI CCWWGG 1 cut(s) 1374
TaaI ACNGT 5 cut(s) 386, 482, 501, 622, 1105
TaiI ACGT 2 cut(s) 86, 277
TaqI TCGA 3 cut(s) 153, 1205, 1336
TasI AATT 5 cut(s) 791, 825, 896, 1072, 1395
TauI GCSGC 1 cut(s) 1292
TfiI GAWTC 5 cut(s) 46, 155, 610, 760, 880
Tru1I TTAA 3 cut(s) 255, 723, 1116
Tru9I TTAA 3 cut(s) 255, 723, 1116
TscAI CASTG 4 cut(s) 391, 523, 1264, 1281
TseFI GTSAC 1 cut(s) 1297
TseI GCWGC 6 cut(s) 28, 389, 437, 818, 867, 1286
Tsp45I GTSAC 1 cut(s) 1297
TspDTI ATGAA 5 cut(s) 162, 602, 824, 872, 1104
TspGWI ACGGA 1 cut(s) 125
TspRI CASTG 4 cut(s) 391, 523, 1264, 1281
Van91I CCANNNNNTGG 1 cut(s) 959
VneI GTGCAC 1 cut(s) 408
XbaI TCTAGA 1 cut(s) 277
XcmI CCANNNNNNNNNTGG 1 cut(s) 1264
XmnI GAANNNNTTC 1 cut(s) 1095
XspI CTAG 9 cut(s) 159, 218, 231, 278, 774, 911, 1121, 1212, 1316
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.